RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 USP17L8P0C7I0 530 aa10.96□□□□□ -0.65
USP54-206ENST00000433394 RTL5Q5HYW3 569 aaPredicted RBP10.96□□□□□ -0.65
USP54-206ENST00000433394 DMRTA1Q5VZB9 504 aa10.96□□□□□ -0.65
USP54-206ENST00000433394 CABLES1Q8TDN4 633 aa10.96□□□□□ -0.65
USP54-206ENST00000433394 TSC1Q92574 1164 aa10.96□□□□□ -0.65
USP54-206ENST00000433394 PRR14Q9BWN1 585 aa10.96□□□□□ -0.65
USP54-206ENST00000433394 C6orf229H3BNL8 230 aa10.95□□□□□ -0.66
USP54-206ENST00000433394 ABL2P42684 1182 aa10.95□□□□□ -0.66
USP54-206ENST00000433394 FNBP4Q8N3X1 1017 aaPredicted RBP10.95□□□□□ -0.66
USP54-206ENST00000433394 MTMR14Q8NCE2 650 aa10.95□□□□□ -0.66
USP54-206ENST00000433394 GDPD2Q9HCC8 539 aa10.95□□□□□ -0.66
USP54-206ENST00000433394 GOLGA8CPA6NN73 597 aa10.94□□□□□ -0.66
USP54-206ENST00000433394 TK2O00142 265 aa10.94□□□□□ -0.66
USP54-206ENST00000433394 ATP6V1AP38606 617 aa10.94□□□□□ -0.66
USP54-206ENST00000433394 NDUFB9Q9Y6M9 179 aa10.94□□□□□ -0.66
USP54-206ENST00000433394 LRCH3Q96II8 777 aa10.93□□□□□ -0.66
USP54-206ENST00000433394 FUT2Q10981 343 aa10.92□□□□□ -0.66
USP54-206ENST00000433394 ZFRQ96KR1 1074 aaKnown RBP10.91□□□□□ -0.66
USP54-206ENST00000433394 Q3C1V9 767 aa10.9□□□□□ -0.66
USP54-206ENST00000433394 FBXO31Q5XUX0 539 aaPredicted RBP10.9□□□□□ -0.66
USP54-206ENST00000433394 PNMA1Q8ND90 353 aa10.9□□□□□ -0.66
USP54-206ENST00000433394 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.9□□□□□ -0.66
USP54-206ENST00000433394 GUCA2AQ02747 115 aa10.89□□□□□ -0.67
USP54-206ENST00000433394 WASHC4Q2M389 1173 aa10.89□□□□□ -0.67
USP54-206ENST00000433394 CALR3Q96L12 384 aaKnown RBP10.89□□□□□ -0.67
USP54-206ENST00000433394 POTEEQ6S8J3 1075 aa10.88□□□□□ -0.67
USP54-206ENST00000433394 PCDHGC3Q9UN70 934 aa10.88□□□□□ -0.67
USP54-206ENST00000433394 TBC1D2BQ9UPU7 963 aa10.88□□□□□ -0.67
USP54-206ENST00000433394 PDIA4P13667 645 aaKnown RBP10.87□□□□□ -0.67
USP54-206ENST00000433394 ANKK1Q8NFD2 765 aa10.87□□□□□ -0.67
USP54-206ENST00000433394 BHMG1C9JSJ3 638 aaPredicted RBP10.85□□□□□ -0.67
USP54-206ENST00000433394 CTDSPL2Q05D32 466 aa10.85□□□□□ -0.67
USP54-206ENST00000433394 HLA-CQ95604 372 aa10.85□□□□□ -0.67
USP54-206ENST00000433394 LSM11P83369 360 aaKnown RBP eCLIP10.84□□□□□ -0.67
USP54-206ENST00000433394 ADGRD1Q6QNK2 874 aa10.84□□□□□ -0.67
USP54-206ENST00000433394 RETREG3Q86VR2 466 aa10.84□□□□□ -0.67
USP54-206ENST00000433394 ACTN4O43707 911 aaKnown RBP10.83□□□□□ -0.68
USP54-206ENST00000433394 PPP4CP60510 307 aa10.83□□□□□ -0.68
USP54-206ENST00000433394 PRR7Q8TB68 274 aa10.83□□□□□ -0.68
USP54-206ENST00000433394 CFAP99D6REC4 459 aa10.8□□□□□ -0.68
USP54-206ENST00000433394 GLMNQ92990 594 aa10.8□□□□□ -0.68
USP54-206ENST00000433394 ACIN1Q9UKV3 1341 aaKnown RBP10.8□□□□□ -0.68
USP54-206ENST00000433394 MORN1Q5T089 497 aa10.79□□□□□ -0.68
USP54-206ENST00000433394 GJD4Q96KN9 370 aaPredicted RBP10.79□□□□□ -0.68
USP54-206ENST00000433394 NR1I2O75469 434 aa10.78□□□□□ -0.68
USP54-206ENST00000433394 PDE4CQ08493 712 aa10.78□□□□□ -0.68
USP54-206ENST00000433394 DESI1Q6ICB0 168 aa10.78□□□□□ -0.68
USP54-206ENST00000433394 ANKRD13DQ6ZTN6 518 aa10.78□□□□□ -0.68
USP54-206ENST00000433394 LRRN4Q8WUT4 740 aa10.78□□□□□ -0.68
USP54-206ENST00000433394 HPS5Q9UPZ3 1129 aa10.78□□□□□ -0.68
USP54-206ENST00000433394 PPP1R15AO75807 674 aaPredicted RBP10.77□□□□□ -0.69
USP54-206ENST00000433394 PUS10Q3MIT2 529 aaKnown RBP10.77□□□□□ -0.69
USP54-206ENST00000433394 TSR3Q9UJK0 312 aaKnown RBP10.77□□□□□ -0.69
USP54-206ENST00000433394 SLC27A5Q9Y2P5 690 aa10.77□□□□□ -0.69
USP54-206ENST00000433394 ZBTB7CA1YPR0 619 aa10.76□□□□□ -0.69
USP54-206ENST00000433394 SOX11P35716 441 aa10.76□□□□□ -0.69
USP54-206ENST00000433394 SYMPKQ92797 1274 aaKnown RBP10.76□□□□□ -0.69
USP54-206ENST00000433394 HMX1Q9NP08 348 aaPredicted RBP10.76□□□□□ -0.69
USP54-206ENST00000433394 PCDHB3Q9Y5E6 796 aa10.76□□□□□ -0.69
USP54-206ENST00000433394 SOWAHBA6NEL2 793 aa10.75□□□□□ -0.69
USP54-206ENST00000433394 FMNL1O95466 1100 aaPredicted RBP10.75□□□□□ -0.69
USP54-206ENST00000433394 WNT2BQ93097 391 aa10.75□□□□□ -0.69
USP54-206ENST00000433394 USB1Q9BQ65 265 aaKnown RBP10.75□□□□□ -0.69
USP54-206ENST00000433394 HDGFL1Q5TGJ6 251 aa10.74□□□□□ -0.69
USP54-206ENST00000433394 RNF166Q96A37 237 aaPredicted RBP10.74□□□□□ -0.69
USP54-206ENST00000433394 TRIM34Q9BYJ4 488 aa10.74□□□□□ -0.69
USP54-206ENST00000433394 SALL2Q9Y467 1007 aaPredicted RBP10.74□□□□□ -0.69
USP54-206ENST00000433394 POM121CA8CG34 1229 aa10.73□□□□□ -0.69
USP54-206ENST00000433394 PODXL2Q9NZ53 605 aa10.73□□□□□ -0.69
USP54-206ENST00000433394 HRO43593 1189 aa10.72□□□□□ -0.69
USP54-206ENST00000433394 NR6A1Q15406 480 aa10.72□□□□□ -0.69
USP54-206ENST00000433394 MYT1LQ9UL68 1186 aa10.72□□□□□ -0.69
USP54-206ENST00000433394 EIF4G2P78344 907 aaKnown RBP eCLIP10.71□□□□□ -0.69
USP54-206ENST00000433394 VAC14Q08AM6 782 aa10.71□□□□□ -0.69
USP54-206ENST00000433394 SEMA3FQ13275 785 aa10.71□□□□□ -0.69
USP54-206ENST00000433394 IRF5Q13568 498 aa10.71□□□□□ -0.69
USP54-206ENST00000433394 LYPD8Q6UX82 237 aa10.7□□□□□ -0.7
USP54-206ENST00000433394 BCAMP50895 628 aa10.69□□□□□ -0.7
USP54-206ENST00000433394 ZNF592Q92610 1267 aa10.69□□□□□ -0.7
USP54-206ENST00000433394 BRICD5Q6PL45 260 aa10.68□□□□□ -0.7
USP54-206ENST00000433394 SCUBE3Q8IX30 993 aa10.68□□□□□ -0.7
USP54-206ENST00000433394 PER1O15534 1290 aaPredicted RBP10.67□□□□□ -0.7
USP54-206ENST00000433394 APLP1P51693 650 aa10.67□□□□□ -0.7
USP54-206ENST00000433394 RNF19BQ6ZMZ0 732 aa10.67□□□□□ -0.7
USP54-206ENST00000433394 KCTD17Q8N5Z5 321 aa10.67□□□□□ -0.7
USP54-206ENST00000433394 ZC3H4Q9UPT8 1303 aaKnown RBP10.66□□□□□ -0.7
USP54-206ENST00000433394 JUNDP17535 347 aa10.66□□□□□ -0.7
USP54-206ENST00000433394 CTHP32929 405 aa10.66□□□□□ -0.7
USP54-206ENST00000433394 PTPRNQ16849 979 aa10.66□□□□□ -0.7
USP54-206ENST00000433394 BLOC1S3Q6QNY0 202 aa10.66□□□□□ -0.7
USP54-206ENST00000433394 ARMC2Q8NEN0 867 aa10.66□□□□□ -0.7
USP54-206ENST00000433394 EPS8L1Q8TE68 723 aa10.66□□□□□ -0.7
USP54-206ENST00000433394 TRIM26Q12899 539 aaPredicted RBP10.65□□□□□ -0.7
USP54-206ENST00000433394 NYAP1Q6ZVC0 841 aa10.65□□□□□ -0.7
USP54-206ENST00000433394 PBXIP1Q96AQ6 731 aa10.65□□□□□ -0.7
USP54-206ENST00000433394 TRAIPQ9BWF2 469 aa10.64□□□□□ -0.71
USP54-206ENST00000433394 FKBPLQ9UIM3 349 aa10.64□□□□□ -0.71
USP54-206ENST00000433394 NR1H3Q13133 447 aa10.63□□□□□ -0.71
USP54-206ENST00000433394 ALG2Q9H553 416 aa10.63□□□□□ -0.71
USP54-206ENST00000433394 ZBBXA8MT70 800 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms