RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 U2AF1Q01081 240 aaKnown RBP eCLIP14.34□□□□□ -0.11
DDX56-203ENST00000421223 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.33□□□□□ -0.12
DDX56-203ENST00000421223 CFAP53Q96M91 514 aa14.33□□□□□ -0.12
DDX56-203ENST00000421223 RIMBP3CA6NJZ7 1639 aa14.32□□□□□ -0.12
DDX56-203ENST00000421223 RIMBP3BA6NNM3 1639 aa14.32□□□□□ -0.12
DDX56-203ENST00000421223 RIMBP3Q9UFD9 1639 aa14.32□□□□□ -0.12
DDX56-203ENST00000421223 BCAR3O75815 825 aa14.32□□□□□ -0.12
DDX56-203ENST00000421223 CANXP27824 592 aaKnown RBP14.32□□□□□ -0.12
DDX56-203ENST00000421223 SLFN5Q08AF3 891 aa14.32□□□□□ -0.12
DDX56-203ENST00000421223 NRXN1Q9ULB1 1477 aa14.31□□□□□ -0.12
DDX56-203ENST00000421223 CAMSAP1Q5T5Y3 1602 aa14.31□□□□□ -0.12
DDX56-203ENST00000421223 FBLN1P23142 703 aa14.31□□□□□ -0.12
DDX56-203ENST00000421223 TCP11L2Q8N4U5 519 aa14.31□□□□□ -0.12
DDX56-203ENST00000421223 FRAT1Q92837 279 aaPredicted RBP14.31□□□□□ -0.12
DDX56-203ENST00000421223 NPC1L1Q9UHC9 1359 aa14.3□□□□□ -0.12
DDX56-203ENST00000421223 CABP1Q9NZU7 370 aa14.3□□□□□ -0.12
DDX56-203ENST00000421223 SIGLEC1Q9BZZ2 1709 aa14.3□□□□□ -0.12
DDX56-203ENST00000421223 CDK19Q9BWU1 502 aa14.3□□□□□ -0.12
DDX56-203ENST00000421223 KIAA1210Q9ULL0 1709 aa14.29□□□□□ -0.12
DDX56-203ENST00000421223 MYOM1P52179 1685 aa14.29□□□□□ -0.12
DDX56-203ENST00000421223 ZMYM4Q5VZL5 1548 aa14.29□□□□□ -0.12
DDX56-203ENST00000421223 SBNO2Q9Y2G9 1366 aa14.29□□□□□ -0.12
DDX56-203ENST00000421223 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.28□□□□□ -0.12
DDX56-203ENST00000421223 BCL2L13Q9BXK5 485 aa14.28□□□□□ -0.12
DDX56-203ENST00000421223 ADGRB1O14514 1584 aa14.28□□□□□ -0.12
DDX56-203ENST00000421223 NUTM2FA1L443 756 aa14.28□□□□□ -0.12
DDX56-203ENST00000421223 WWC1Q8IX03 1113 aa14.28□□□□□ -0.12
DDX56-203ENST00000421223 TXNDC2Q86VQ3 553 aa14.27□□□□□ -0.12
DDX56-203ENST00000421223 TERF2IPQ9NYB0 399 aa14.27□□□□□ -0.12
DDX56-203ENST00000421223 E9PSI1 815 aa14.27□□□□□ -0.13
DDX56-203ENST00000421223 PPLO60437 1756 aa14.27□□□□□ -0.13
DDX56-203ENST00000421223 ZNF521Q96K83 1311 aa14.26□□□□□ -0.13
DDX56-203ENST00000421223 RUNDC1Q96C34 613 aa14.26□□□□□ -0.13
DDX56-203ENST00000421223 IFT172Q9UG01 1749 aa14.26□□□□□ -0.13
DDX56-203ENST00000421223 RICTORQ6R327 1708 aa14.26□□□□□ -0.13
DDX56-203ENST00000421223 NEURL4Q96JN8 1562 aa14.26□□□□□ -0.13
DDX56-203ENST00000421223 HDGFL2Q7Z4V5 671 aaPredicted RBP14.25□□□□□ -0.13
DDX56-203ENST00000421223 ARHGAP31Q2M1Z3 1444 aa14.25□□□□□ -0.13
DDX56-203ENST00000421223 NEXMIFQ5QGS0 1516 aa14.25□□□□□ -0.13
DDX56-203ENST00000421223 A0A1W2PP64 1363 aa14.25□□□□□ -0.13
DDX56-203ENST00000421223 GLI2P10070 1586 aa14.25□□□□□ -0.13
DDX56-203ENST00000421223 QRICH2Q9H0J4 1663 aa14.25□□□□□ -0.13
DDX56-203ENST00000421223 ANP32AP39687 249 aaKnown RBP14.24□□□□□ -0.13
DDX56-203ENST00000421223 SETBP1Q9Y6X0 1596 aa14.24□□□□□ -0.13
DDX56-203ENST00000421223 ANKRD36BQ8N2N9 1353 aa14.23□□□□□ -0.13
DDX56-203ENST00000421223 FYB1O15117 783 aa14.23□□□□□ -0.13
DDX56-203ENST00000421223 CEBPAP49715 358 aaPredicted RBP14.23□□□□□ -0.13
DDX56-203ENST00000421223 YTHDC2Q9H6S0 1430 aaKnown RBP14.23□□□□□ -0.13
DDX56-203ENST00000421223 POLR3AO14802 1390 aaPredicted RBP14.23□□□□□ -0.13
DDX56-203ENST00000421223 INSRP06213 1382 aa14.23□□□□□ -0.13
DDX56-203ENST00000421223 RGS3P49796 1198 aa14.23□□□□□ -0.13
DDX56-203ENST00000421223 NCKAP5LQ9HCH0 1330 aa14.23□□□□□ -0.13
DDX56-203ENST00000421223 CLUAP1Q96AJ1 413 aa14.23□□□□□ -0.13
DDX56-203ENST00000421223 PIK3C2BO00750 1634 aa14.22□□□□□ -0.13
DDX56-203ENST00000421223 PANK1Q8TE04 598 aa14.22□□□□□ -0.13
DDX56-203ENST00000421223 COG6Q9Y2V7 657 aa14.21□□□□□ -0.13
DDX56-203ENST00000421223 TULP4Q9NRJ4 1543 aa14.21□□□□□ -0.13
DDX56-203ENST00000421223 PDE4AP27815 886 aa14.2□□□□□ -0.14
DDX56-203ENST00000421223 MYO5BQ9ULV0 1848 aa14.2□□□□□ -0.14
DDX56-203ENST00000421223 TCERG1O14776 1098 aaKnown RBP14.2□□□□□ -0.14
DDX56-203ENST00000421223 TSR2Q969E8 191 aaKnown RBP14.2□□□□□ -0.14
DDX56-203ENST00000421223 MAPK8IP3Q9UPT6 1336 aa14.2□□□□□ -0.14
DDX56-203ENST00000421223 DIP2BQ9P265 1576 aa14.19□□□□□ -0.14
DDX56-203ENST00000421223 SOX12O15370 315 aa14.19□□□□□ -0.14
DDX56-203ENST00000421223 RIMS2Q9UQ26 1411 aa14.18□□□□□ -0.14
DDX56-203ENST00000421223 ZMYM3Q14202 1370 aa14.18□□□□□ -0.14
DDX56-203ENST00000421223 TRMT2AQ8IZ69 625 aaKnown RBP14.18□□□□□ -0.14
DDX56-203ENST00000421223 ZRANB1Q9UGI0 708 aa14.18□□□□□ -0.14
DDX56-203ENST00000421223 LAS1LQ9Y4W2 734 aaKnown RBP14.18□□□□□ -0.14
DDX56-203ENST00000421223 NKTRP30414 1462 aaKnown RBP14.18□□□□□ -0.14
DDX56-203ENST00000421223 TNNQ9UQP3 1299 aa14.18□□□□□ -0.14
DDX56-203ENST00000421223 ATAD2Q6PL18 1390 aa14.18□□□□□ -0.14
DDX56-203ENST00000421223 PAK3O75914 559 aaPredicted RBP14.17□□□□□ -0.14
DDX56-203ENST00000421223 TRHP20396 242 aaPredicted RBP14.17□□□□□ -0.14
DDX56-203ENST00000421223 PREX1Q8TCU6 1659 aa14.17□□□□□ -0.14
DDX56-203ENST00000421223 HMOX1P09601 288 aa14.17□□□□□ -0.14
DDX56-203ENST00000421223 NBR1Q14596 966 aa14.17□□□□□ -0.14
DDX56-203ENST00000421223 SLC26A8Q96RN1 970 aa14.17□□□□□ -0.14
DDX56-203ENST00000421223 DIAPH1O60610 1272 aaKnown RBP14.16□□□□□ -0.14
DDX56-203ENST00000421223 MYO3AQ8NEV4 1616 aa14.16□□□□□ -0.14
DDX56-203ENST00000421223 PUS7Q96PZ0 661 aaKnown RBP14.16□□□□□ -0.14
DDX56-203ENST00000421223 TMEM131LA2VDJ0 1609 aa14.15□□□□□ -0.14
DDX56-203ENST00000421223 ZFYVE9O95405 1425 aa14.15□□□□□ -0.14
DDX56-203ENST00000421223 NME9Q86XW9 330 aa14.15□□□□□ -0.14
DDX56-203ENST00000421223 ZBTB47Q9UFB7 747 aaPredicted RBP14.15□□□□□ -0.14
DDX56-203ENST00000421223 PPP6R1Q9UPN7 881 aa14.15□□□□□ -0.14
DDX56-203ENST00000421223 NOP58Q9Y2X3 529 aaKnown RBP14.15□□□□□ -0.14
DDX56-203ENST00000421223 RIPK4P57078 832 aa14.15□□□□□ -0.15
DDX56-203ENST00000421223 METP08581 1390 aa14.14□□□□□ -0.15
DDX56-203ENST00000421223 PTPRMP28827 1452 aa14.14□□□□□ -0.15
DDX56-203ENST00000421223 ARHGEF28Q8N1W1 1705 aaKnown RBP14.14□□□□□ -0.15
DDX56-203ENST00000421223 CLTCQ00610 1675 aaKnown RBP14.13□□□□□ -0.15
DDX56-203ENST00000421223 HDGFP51858 240 aaKnown RBP14.13□□□□□ -0.15
DDX56-203ENST00000421223 NGEFQ8N5V2 710 aa14.13□□□□□ -0.15
DDX56-203ENST00000421223 EMILIN1Q9Y6C2 1016 aa14.13□□□□□ -0.15
DDX56-203ENST00000421223 A2ML1A8K2U0 1454 aa14.13□□□□□ -0.15
DDX56-203ENST00000421223 ABCC11Q96J66 1382 aa14.13□□□□□ -0.15
DDX56-203ENST00000421223 WASLO00401 505 aaPredicted RBP14.13□□□□□ -0.15
DDX56-203ENST00000421223 NEFMP07197 916 aa14.13□□□□□ -0.15
DDX56-203ENST00000421223 TMPOP42166 694 aaKnown RBP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms