RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 KIAA1210Q9ULL0 1709 aa33■■■□□ 2.87
SMARCB1-205ENST00000417137 PRAM1Q96QH2 718 aa32.99■■■□□ 2.87
SMARCB1-205ENST00000417137 KNDC1Q76NI1 1749 aa32.99■■■□□ 2.87
SMARCB1-205ENST00000417137 DLC1Q96QB1 1528 aa32.97■■■□□ 2.87
SMARCB1-205ENST00000417137 NBPF8Q3BBV2 869 aa32.96■■■□□ 2.87
SMARCB1-205ENST00000417137 SIPA1L2Q9P2F8 1722 aaPredicted RBP32.95■■■□□ 2.87
SMARCB1-205ENST00000417137 PLEKHH1Q9ULM0 1364 aa32.95■■■□□ 2.86
SMARCB1-205ENST00000417137 ROCK2O75116 1388 aaKnown RBP32.93■■■□□ 2.86
SMARCB1-205ENST00000417137 SAFB2Q14151 953 aaKnown RBP eCLIP32.92■■■□□ 2.86
SMARCB1-205ENST00000417137 MED1Q15648 1581 aaPredicted RBP32.89■■■□□ 2.86
SMARCB1-205ENST00000417137 NALCNQ8IZF0 1738 aa32.87■■■□□ 2.85
SMARCB1-205ENST00000417137 TRPM1Q7Z4N2 1603 aa32.85■■■□□ 2.85
SMARCB1-205ENST00000417137 CARD11Q9BXL7 1154 aa32.83■■■□□ 2.85
SMARCB1-205ENST00000417137 MST1RQ04912 1400 aa32.83■■■□□ 2.85
SMARCB1-205ENST00000417137 GPRASP1Q5JY77 1395 aa32.82■■■□□ 2.84
SMARCB1-205ENST00000417137 MINK1Q8N4C8 1332 aaPredicted RBP32.8■■■□□ 2.84
SMARCB1-205ENST00000417137 CDC42BPGQ6DT37 1551 aa32.8■■■□□ 2.84
SMARCB1-205ENST00000417137 RALGAPBQ86X10 1494 aa32.79■■■□□ 2.84
SMARCB1-205ENST00000417137 CENPJQ9HC77 1338 aaPredicted RBP32.78■■■□□ 2.84
SMARCB1-205ENST00000417137 BRINP3Q76B58 766 aa32.78■■■□□ 2.84
SMARCB1-205ENST00000417137 C1orf167Q5SNV9 1468 aa32.78■■■□□ 2.84
SMARCB1-205ENST00000417137 HIRIP3Q9BW71 556 aaPredicted RBP32.77■■■□□ 2.84
SMARCB1-205ENST00000417137 EIF3AQ14152 1382 aaKnown RBP32.77■■■□□ 2.84
SMARCB1-205ENST00000417137 ROBO1Q9Y6N7 1651 aa32.75■■■□□ 2.83
SMARCB1-205ENST00000417137 ARHGEF28Q8N1W1 1705 aaKnown RBP32.74■■■□□ 2.83
SMARCB1-205ENST00000417137 PHF23Q9BUL5 403 aaPredicted RBP32.74■■■□□ 2.83
SMARCB1-205ENST00000417137 NUTM2FA1L443 756 aa32.73■■■□□ 2.83
SMARCB1-205ENST00000417137 WASLO00401 505 aaPredicted RBP32.73■■■□□ 2.83
SMARCB1-205ENST00000417137 ESCO1Q5FWF5 840 aa32.72■■■□□ 2.83
SMARCB1-205ENST00000417137 ORAI2Q96SN7 254 aa32.7■■■□□ 2.83
SMARCB1-205ENST00000417137 ADGRB2O60241 1585 aa32.68■■■□□ 2.82
SMARCB1-205ENST00000417137 CDK19Q9BWU1 502 aa32.65■■■□□ 2.82
SMARCB1-205ENST00000417137 FMN2Q9NZ56 1722 aa32.63■■■□□ 2.81
SMARCB1-205ENST00000417137 ANKARQ7Z5J8 1434 aa32.63■■■□□ 2.81
SMARCB1-205ENST00000417137 EVC2Q86UK5 1308 aa32.59■■■□□ 2.81
SMARCB1-205ENST00000417137 PHF8Q9UPP1 1060 aa32.59■■■□□ 2.81
SMARCB1-205ENST00000417137 AHDC1Q5TGY3 1603 aaPredicted RBP32.58■■■□□ 2.81
SMARCB1-205ENST00000417137 NPHP3Q7Z494 1330 aa32.57■■■□□ 2.8
SMARCB1-205ENST00000417137 SRPK2P78362 688 aaKnown RBP32.57■■■□□ 2.8
SMARCB1-205ENST00000417137 NUDT16Q96DE0 195 aaKnown RBP32.57■■■□□ 2.8
SMARCB1-205ENST00000417137 TULP4Q9NRJ4 1543 aa32.56■■■□□ 2.8
SMARCB1-205ENST00000417137 FOXO3O43524 673 aa32.56■■■□□ 2.8
SMARCB1-205ENST00000417137 SLC24A1O60721 1099 aa32.56■■■□□ 2.8
SMARCB1-205ENST00000417137 DDX17Q92841 729 aaKnown RBP32.55■■■□□ 2.8
SMARCB1-205ENST00000417137 PHLPP1O60346 1717 aa32.54■■■□□ 2.8
SMARCB1-205ENST00000417137 QRICH2Q9H0J4 1663 aa32.54■■■□□ 2.8
SMARCB1-205ENST00000417137 LRRC59Q96AG4 307 aaKnown RBP32.54■■■□□ 2.8
SMARCB1-205ENST00000417137 PRR36Q9H6K5 1346 aa32.53■■■□□ 2.8
SMARCB1-205ENST00000417137 SBNO2Q9Y2G9 1366 aa32.53■■■□□ 2.8
SMARCB1-205ENST00000417137 ST20-MTHFSA0A0A6YYL1 179 aa32.52■■■□□ 2.8
SMARCB1-205ENST00000417137 CCDC61Q9Y6R9 512 aa32.52■■■□□ 2.8
SMARCB1-205ENST00000417137 SOS2Q07890 1332 aaPredicted RBP32.51■■■□□ 2.79
SMARCB1-205ENST00000417137 USP47Q96K76 1375 aa32.5■■■□□ 2.79
SMARCB1-205ENST00000417137 PMFBP1Q8TBY8 1022 aa32.5■■■□□ 2.79
SMARCB1-205ENST00000417137 CABP2Q9NPB3 220 aa32.5■■■□□ 2.79
SMARCB1-205ENST00000417137 JCADQ9P266 1359 aa32.49■■■□□ 2.79
SMARCB1-205ENST00000417137 NHSL1Q5SYE7 1610 aa32.48■■■□□ 2.79
SMARCB1-205ENST00000417137 PSME1Q06323 249 aa32.48■■■□□ 2.79
SMARCB1-205ENST00000417137 KIF1AQ12756 1690 aa32.46■■■□□ 2.79
SMARCB1-205ENST00000417137 NGDNQ8NEJ9 315 aaKnown RBP32.46■■■□□ 2.79
SMARCB1-205ENST00000417137 COL16A1Q07092 1604 aaPredicted RBP32.46■■■□□ 2.79
SMARCB1-205ENST00000417137 USP32Q8NFA0 1604 aa32.45■■■□□ 2.79
SMARCB1-205ENST00000417137 KRT28Q7Z3Y7 464 aa32.45■■■□□ 2.79
SMARCB1-205ENST00000417137 ATP7BP35670 1465 aa32.45■■■□□ 2.79
SMARCB1-205ENST00000417137 XPCQ01831 940 aaPredicted RBP32.43■■■□□ 2.78
SMARCB1-205ENST00000417137 RGPD8O14715 1765 aaPredicted RBP32.42■■■□□ 2.78
SMARCB1-205ENST00000417137 PLEKHG3A1L390 1219 aa32.42■■■□□ 2.78
SMARCB1-205ENST00000417137 TESK2Q96S53 571 aa32.42■■■□□ 2.78
SMARCB1-205ENST00000417137 EIF4G2P78344 907 aaKnown RBP eCLIP32.39■■■□□ 2.78
SMARCB1-205ENST00000417137 PUS7Q96PZ0 661 aaKnown RBP32.39■■■□□ 2.78
SMARCB1-205ENST00000417137 PXDNQ92626 1479 aa32.38■■■□□ 2.77
SMARCB1-205ENST00000417137 ATAD2Q6PL18 1390 aa32.38■■■□□ 2.77
SMARCB1-205ENST00000417137 SPATA31A6Q5VVP1 1343 aa32.38■■■□□ 2.77
SMARCB1-205ENST00000417137 TMF1P82094 1093 aa32.37■■■□□ 2.77
SMARCB1-205ENST00000417137 RGS17Q9UGC6 210 aaPredicted RBP32.37■■■□□ 2.77
SMARCB1-205ENST00000417137 PPIP5K1Q6PFW1 1433 aa32.36■■■□□ 2.77
SMARCB1-205ENST00000417137 CABP1Q9NZU7 370 aa32.36■■■□□ 2.77
SMARCB1-205ENST00000417137 ITSN1Q15811 1721 aa32.35■■■□□ 2.77
SMARCB1-205ENST00000417137 ACEP12821 1306 aa32.35■■■□□ 2.77
SMARCB1-205ENST00000417137 SBNO1A3KN83 1393 aa32.33■■■□□ 2.77
SMARCB1-205ENST00000417137 POLR3AO14802 1390 aaPredicted RBP32.32■■■□□ 2.77
SMARCB1-205ENST00000417137 SPATA31A3Q5VYP0 1347 aa32.32■■■□□ 2.76
SMARCB1-205ENST00000417137 CDCA8Q53HL2 280 aa32.32■■■□□ 2.76
SMARCB1-205ENST00000417137 PNPLA6Q8IY17 1366 aa32.32■■■□□ 2.76
SMARCB1-205ENST00000417137 TOPAZ1Q8N9V7 1692 aa32.28■■■□□ 2.76
SMARCB1-205ENST00000417137 HSPA5P11021 654 aaKnown RBP32.28■■■□□ 2.76
SMARCB1-205ENST00000417137 LMOD2Q6P5Q4 547 aa32.28■■■□□ 2.76
SMARCB1-205ENST00000417137 SHPRHQ149N8 1683 aa32.27■■■□□ 2.76
SMARCB1-205ENST00000417137 PAK3O75914 559 aaPredicted RBP32.27■■■□□ 2.76
SMARCB1-205ENST00000417137 ZNF692Q9BU19 519 aaPredicted RBP32.27■■■□□ 2.76
SMARCB1-205ENST00000417137 NUTM2BA6NNL0 878 aaPredicted RBP32.26■■■□□ 2.75
SMARCB1-205ENST00000417137 NUTM2EB1AL46 878 aaPredicted RBP32.26■■■□□ 2.75
SMARCB1-205ENST00000417137 NUTM2AQ8IVF1 878 aaPredicted RBP32.26■■■□□ 2.75
SMARCB1-205ENST00000417137 TMC1Q8TDI8 760 aa32.26■■■□□ 2.75
SMARCB1-205ENST00000417137 TNS3Q68CZ2 1445 aa32.26■■■□□ 2.75
SMARCB1-205ENST00000417137 ARHGEF10O15013 1369 aa32.25■■■□□ 2.75
SMARCB1-205ENST00000417137 BRD4O60885 1362 aaPredicted RBP32.22■■■□□ 2.75
SMARCB1-205ENST00000417137 MEX3CQ5U5Q3 659 aaKnown RBP32.22■■■□□ 2.75
SMARCB1-205ENST00000417137 NINLQ9Y2I6 1382 aa32.19■■■□□ 2.74
SMARCB1-205ENST00000417137 SLC12A5Q9H2X9 1139 aa32.19■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms