RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ADGRL3Q9HAR2 1447 aa20.42■□□□□ 0.86
USP4-203ENST00000415188 AHDC1Q5TGY3 1603 aaPredicted RBP20.41■□□□□ 0.86
USP4-203ENST00000415188 RGL3Q3MIN7 710 aa20.41■□□□□ 0.86
USP4-203ENST00000415188 ROBO2Q9HCK4 1378 aa20.4■□□□□ 0.86
USP4-203ENST00000415188 ADGRF5Q8IZF2 1346 aa20.4■□□□□ 0.86
USP4-203ENST00000415188 NALCNQ8IZF0 1738 aa20.39■□□□□ 0.86
USP4-203ENST00000415188 ASXL1Q8IXJ9 1541 aa20.39■□□□□ 0.85
USP4-203ENST00000415188 PTCH1Q13635 1447 aa20.39■□□□□ 0.85
USP4-203ENST00000415188 POTEAQ6S8J7 498 aa20.38■□□□□ 0.85
USP4-203ENST00000415188 USP47Q96K76 1375 aa20.38■□□□□ 0.85
USP4-203ENST00000415188 KIF7Q2M1P5 1343 aa20.36■□□□□ 0.85
USP4-203ENST00000415188 LRP6O75581 1613 aa20.35■□□□□ 0.85
USP4-203ENST00000415188 C11orf95C9JLR9 678 aaPredicted RBP20.35■□□□□ 0.85
USP4-203ENST00000415188 DDX17Q92841 729 aaKnown RBP20.35■□□□□ 0.85
USP4-203ENST00000415188 PRAG1Q86YV5 1406 aa20.34■□□□□ 0.85
USP4-203ENST00000415188 SPATA31A6Q5VVP1 1343 aa20.33■□□□□ 0.84
USP4-203ENST00000415188 ROCK2O75116 1388 aaKnown RBP20.33■□□□□ 0.84
USP4-203ENST00000415188 SHPRHQ149N8 1683 aa20.32■□□□□ 0.84
USP4-203ENST00000415188 IFT172Q9UG01 1749 aa20.32■□□□□ 0.84
USP4-203ENST00000415188 C1orf167Q5SNV9 1468 aa20.32■□□□□ 0.84
USP4-203ENST00000415188 PRKRIP1Q9H875 184 aaPredicted RBP20.31■□□□□ 0.84
USP4-203ENST00000415188 NHSL1Q5SYE7 1610 aa20.31■□□□□ 0.84
USP4-203ENST00000415188 LAMC1P11047 1609 aa20.31■□□□□ 0.84
USP4-203ENST00000415188 MEX3CQ5U5Q3 659 aaKnown RBP20.3■□□□□ 0.84
USP4-203ENST00000415188 STK26Q9P289 416 aa20.3■□□□□ 0.84
USP4-203ENST00000415188 TMEM132EQ6IEE7 984 aa20.29■□□□□ 0.84
USP4-203ENST00000415188 NUTM2BA6NNL0 878 aaPredicted RBP20.28■□□□□ 0.84
USP4-203ENST00000415188 NUTM2EB1AL46 878 aaPredicted RBP20.28■□□□□ 0.84
USP4-203ENST00000415188 PIK3C2GO75747 1445 aa20.28■□□□□ 0.84
USP4-203ENST00000415188 TRPM1Q7Z4N2 1603 aa20.28■□□□□ 0.84
USP4-203ENST00000415188 NUTM2AQ8IVF1 878 aaPredicted RBP20.28■□□□□ 0.84
USP4-203ENST00000415188 NEFLP07196 543 aa20.27■□□□□ 0.84
USP4-203ENST00000415188 ORAI2Q96SN7 254 aa20.27■□□□□ 0.84
USP4-203ENST00000415188 LRPPRCP42704 1394 aaKnown RBP20.25■□□□□ 0.83
USP4-203ENST00000415188 WAPLQ7Z5K2 1190 aa20.25■□□□□ 0.83
USP4-203ENST00000415188 LRRC59Q96AG4 307 aaKnown RBP20.25■□□□□ 0.83
USP4-203ENST00000415188 TECPR2O15040 1411 aa20.24■□□□□ 0.83
USP4-203ENST00000415188 PLEKHH1Q9ULM0 1364 aa20.23■□□□□ 0.83
USP4-203ENST00000415188 CARD11Q9BXL7 1154 aa20.23■□□□□ 0.83
USP4-203ENST00000415188 PNPLA6Q8IY17 1366 aa20.22■□□□□ 0.83
USP4-203ENST00000415188 ABCC11Q96J66 1382 aa20.22■□□□□ 0.83
USP4-203ENST00000415188 CDC42BPGQ6DT37 1551 aa20.22■□□□□ 0.83
USP4-203ENST00000415188 HNRNPUQ00839 825 aaKnown RBP eCLIP20.21■□□□□ 0.83
USP4-203ENST00000415188 YTHDC2Q9H6S0 1430 aaKnown RBP20.21■□□□□ 0.83
USP4-203ENST00000415188 GPRASP1Q5JY77 1395 aa20.21■□□□□ 0.83
USP4-203ENST00000415188 NRXN1Q9ULB1 1477 aa20.2■□□□□ 0.82
USP4-203ENST00000415188 CFAP70Q5T0N1 1121 aa20.2■□□□□ 0.82
USP4-203ENST00000415188 C14orf93Q9H972 538 aaKnown RBP20.2■□□□□ 0.82
USP4-203ENST00000415188 MYOM2P54296 1465 aa20.2■□□□□ 0.82
USP4-203ENST00000415188 DCAF11Q8TEB1 546 aa20.19■□□□□ 0.82
USP4-203ENST00000415188 KNDC1Q76NI1 1749 aa20.19■□□□□ 0.82
USP4-203ENST00000415188 SOS2Q07890 1332 aaPredicted RBP20.19■□□□□ 0.82
USP4-203ENST00000415188 NUTM2FA1L443 756 aa20.18■□□□□ 0.82
USP4-203ENST00000415188 ESCO1Q5FWF5 840 aa20.18■□□□□ 0.82
USP4-203ENST00000415188 ZNF772Q68DY9 489 aaPredicted RBP20.18■□□□□ 0.82
USP4-203ENST00000415188 KTN1Q86UP2 1357 aaKnown RBP20.17■□□□□ 0.82
USP4-203ENST00000415188 FKBP8Q14318 412 aa20.17■□□□□ 0.82
USP4-203ENST00000415188 MRS2Q9HD23 443 aa20.17■□□□□ 0.82
USP4-203ENST00000415188 AFF2P51816 1311 aa20.15■□□□□ 0.82
USP4-203ENST00000415188 C8orf37Q96NL8 207 aa20.14■□□□□ 0.81
USP4-203ENST00000415188 XPCQ01831 940 aaPredicted RBP20.13■□□□□ 0.81
USP4-203ENST00000415188 ZBED9Q6R2W3 1325 aa20.13■□□□□ 0.81
USP4-203ENST00000415188 FOXO3O43524 673 aa20.12■□□□□ 0.81
USP4-203ENST00000415188 ADAMTS2O95450 1211 aa20.12■□□□□ 0.81
USP4-203ENST00000415188 KDM2AQ9Y2K7 1162 aa20.12■□□□□ 0.81
USP4-203ENST00000415188 NPHP3Q7Z494 1330 aa20.12■□□□□ 0.81
USP4-203ENST00000415188 SIRT1Q96EB6 747 aa20.11■□□□□ 0.81
USP4-203ENST00000415188 PXDNQ92626 1479 aa20.11■□□□□ 0.81
USP4-203ENST00000415188 SAFB2Q14151 953 aaKnown RBP eCLIP20.11■□□□□ 0.81
USP4-203ENST00000415188 RXRBP28702 533 aa20.1■□□□□ 0.81
USP4-203ENST00000415188 CCDC184Q52MB2 194 aa20.1■□□□□ 0.81
USP4-203ENST00000415188 STAC3Q96MF2 364 aa20.1■□□□□ 0.81
USP4-203ENST00000415188 PRAM1Q96QH2 718 aa20.1■□□□□ 0.81
USP4-203ENST00000415188 FMN2Q9NZ56 1722 aa20.09■□□□□ 0.81
USP4-203ENST00000415188 ERICH6BQ5W0A0 696 aa20.09■□□□□ 0.81
USP4-203ENST00000415188 ST20-MTHFSA0A0A6YYL1 179 aa20.08■□□□□ 0.81
USP4-203ENST00000415188 ADGRB1O14514 1584 aa20.08■□□□□ 0.8
USP4-203ENST00000415188 NGLY1Q96IV0 654 aa20.06■□□□□ 0.8
USP4-203ENST00000415188 COL22A1Q8NFW1 1626 aaPredicted RBP20.06■□□□□ 0.8
USP4-203ENST00000415188 QTRT2Q9H974 415 aaKnown RBP20.05■□□□□ 0.8
USP4-203ENST00000415188 DLC1Q96QB1 1528 aa20.05■□□□□ 0.8
USP4-203ENST00000415188 POGKQ9P215 609 aa20.05■□□□□ 0.8
USP4-203ENST00000415188 TRAK1Q9UPV9 953 aa20.05■□□□□ 0.8
USP4-203ENST00000415188 RALBP1Q15311 655 aa20.04■□□□□ 0.8
USP4-203ENST00000415188 FAM9BQ8IZU0 186 aa20.04■□□□□ 0.8
USP4-203ENST00000415188 BRD4O60885 1362 aaPredicted RBP20.02■□□□□ 0.8
USP4-203ENST00000415188 POLR3GLQ9BT43 218 aa20.02■□□□□ 0.8
USP4-203ENST00000415188 KIAA1210Q9ULL0 1709 aa20.02■□□□□ 0.79
USP4-203ENST00000415188 KIF1AQ12756 1690 aa20.02■□□□□ 0.79
USP4-203ENST00000415188 RGPD8O14715 1765 aaPredicted RBP20.01■□□□□ 0.79
USP4-203ENST00000415188 PHF8Q9UPP1 1060 aa20.01■□□□□ 0.79
USP4-203ENST00000415188 CDK12Q9NYV4 1490 aaPredicted RBP20.01■□□□□ 0.79
USP4-203ENST00000415188 RBM6P78332 1123 aaKnown RBP20■□□□□ 0.79
USP4-203ENST00000415188 KRT28Q7Z3Y7 464 aa20■□□□□ 0.79
USP4-203ENST00000415188 USP21Q9UK80 565 aa20■□□□□ 0.79
USP4-203ENST00000415188 SPATA31A3Q5VYP0 1347 aa20■□□□□ 0.79
USP4-203ENST00000415188 RGS12O14924 1447 aa19.99■□□□□ 0.79
USP4-203ENST00000415188 MINK1Q8N4C8 1332 aaPredicted RBP19.99■□□□□ 0.79
USP4-203ENST00000415188 MYBBP1AQ9BQG0 1328 aaKnown RBP19.99■□□□□ 0.79
USP4-203ENST00000415188 FNBP4Q8N3X1 1017 aaPredicted RBP19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms