RNA–Protein interactions for RNA: ENST00000412686.5

CPSF4-202, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 745 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-202ENST00000412686 TOM1O60784 492 aa11.13□□□□□ -0.63
CPSF4-202ENST00000412686 NBPF8Q3BBV2 869 aa11.13□□□□□ -0.63
CPSF4-202ENST00000412686 ABCC11Q96J66 1382 aa11.13□□□□□ -0.63
CPSF4-202ENST00000412686 ARHGEF28Q8N1W1 1705 aaKnown RBP11.12□□□□□ -0.63
CPSF4-202ENST00000412686 NCOA3Q9Y6Q9 1424 aa11.12□□□□□ -0.63
CPSF4-202ENST00000412686 CCER1Q8TC90 406 aaPredicted RBP11.12□□□□□ -0.63
CPSF4-202ENST00000412686 STAC3Q96MF2 364 aa11.12□□□□□ -0.63
CPSF4-202ENST00000412686 TRAK1Q9UPV9 953 aa11.12□□□□□ -0.63
CPSF4-202ENST00000412686 ROBO1Q9Y6N7 1651 aa11.11□□□□□ -0.63
CPSF4-202ENST00000412686 DLC1Q96QB1 1528 aa11.1□□□□□ -0.63
CPSF4-202ENST00000412686 SAFB2Q14151 953 aaKnown RBP eCLIP11.1□□□□□ -0.63
CPSF4-202ENST00000412686 PRAM1Q96QH2 718 aa11.1□□□□□ -0.63
CPSF4-202ENST00000412686 C19orf44Q9H6X5 657 aa11.1□□□□□ -0.63
CPSF4-202ENST00000412686 MST1RQ04912 1400 aa11.09□□□□□ -0.63
CPSF4-202ENST00000412686 FAM135BQ49AJ0 1406 aa11.09□□□□□ -0.63
CPSF4-202ENST00000412686 CDC42BPGQ6DT37 1551 aa11.08□□□□□ -0.64
CPSF4-202ENST00000412686 ATF3P18847 181 aa11.08□□□□□ -0.64
CPSF4-202ENST00000412686 CADPS2Q86UW7 1296 aa11.08□□□□□ -0.64
CPSF4-202ENST00000412686 DCCP43146 1447 aa11.08□□□□□ -0.64
CPSF4-202ENST00000412686 HSPA1LP34931 641 aa11.07□□□□□ -0.64
CPSF4-202ENST00000412686 SLAIN2Q9P270 581 aa11.07□□□□□ -0.64
CPSF4-202ENST00000412686 CLSPNQ9HAW4 1339 aa11.07□□□□□ -0.64
CPSF4-202ENST00000412686 FMN2Q9NZ56 1722 aa11.06□□□□□ -0.64
CPSF4-202ENST00000412686 ROCK2O75116 1388 aaKnown RBP11.06□□□□□ -0.64
CPSF4-202ENST00000412686 NUTM2FA1L443 756 aa11.06□□□□□ -0.64
CPSF4-202ENST00000412686 SIRT1Q96EB6 747 aa11.06□□□□□ -0.64
CPSF4-202ENST00000412686 POGKQ9P215 609 aa11.06□□□□□ -0.64
CPSF4-202ENST00000412686 MINK1Q8N4C8 1332 aaPredicted RBP11.06□□□□□ -0.64
CPSF4-202ENST00000412686 C1orf167Q5SNV9 1468 aa11.06□□□□□ -0.64
CPSF4-202ENST00000412686 RALGAPBQ86X10 1494 aa11.06□□□□□ -0.64
CPSF4-202ENST00000412686 HIRIP3Q9BW71 556 aaPredicted RBP11.05□□□□□ -0.64
CPSF4-202ENST00000412686 RGPD8O14715 1765 aaPredicted RBP11.05□□□□□ -0.64
CPSF4-202ENST00000412686 QRICH2Q9H0J4 1663 aa11.04□□□□□ -0.64
CPSF4-202ENST00000412686 ADGRB2O60241 1585 aa11.04□□□□□ -0.64
CPSF4-202ENST00000412686 BRINP3Q76B58 766 aa11.04□□□□□ -0.64
CPSF4-202ENST00000412686 USP32Q8NFA0 1604 aa11.04□□□□□ -0.64
CPSF4-202ENST00000412686 PHLPP1O60346 1717 aa11.04□□□□□ -0.64
CPSF4-202ENST00000412686 GPRASP1Q5JY77 1395 aa11.03□□□□□ -0.64
CPSF4-202ENST00000412686 DDX17Q92841 729 aaKnown RBP11.03□□□□□ -0.64
CPSF4-202ENST00000412686 NHSL1Q5SYE7 1610 aa11.02□□□□□ -0.64
CPSF4-202ENST00000412686 SLC4A2P04920 1241 aa11.02□□□□□ -0.65
CPSF4-202ENST00000412686 ORAI2Q96SN7 254 aa11.02□□□□□ -0.65
CPSF4-202ENST00000412686 COL16A1Q07092 1604 aaPredicted RBP11.02□□□□□ -0.65
CPSF4-202ENST00000412686 RNF39Q9H2S5 420 aa11.01□□□□□ -0.65
CPSF4-202ENST00000412686 AHDC1Q5TGY3 1603 aaPredicted RBP11.01□□□□□ -0.65
CPSF4-202ENST00000412686 CARD11Q9BXL7 1154 aa11□□□□□ -0.65
CPSF4-202ENST00000412686 PRR36Q9H6K5 1346 aa11□□□□□ -0.65
CPSF4-202ENST00000412686 CENPJQ9HC77 1338 aaPredicted RBP11□□□□□ -0.65
CPSF4-202ENST00000412686 ESCO1Q5FWF5 840 aa10.99□□□□□ -0.65
CPSF4-202ENST00000412686 TULP4Q9NRJ4 1543 aa10.99□□□□□ -0.65
CPSF4-202ENST00000412686 WASLO00401 505 aaPredicted RBP10.98□□□□□ -0.65
CPSF4-202ENST00000412686 ATP7BP35670 1465 aa10.98□□□□□ -0.65
CPSF4-202ENST00000412686 XPCQ01831 940 aaPredicted RBP10.97□□□□□ -0.65
CPSF4-202ENST00000412686 TIMELESSQ9UNS1 1208 aa10.97□□□□□ -0.65
CPSF4-202ENST00000412686 KIF1AQ12756 1690 aa10.97□□□□□ -0.65
CPSF4-202ENST00000412686 TOPAZ1Q8N9V7 1692 aa10.96□□□□□ -0.65
CPSF4-202ENST00000412686 ANKARQ7Z5J8 1434 aa10.96□□□□□ -0.65
CPSF4-202ENST00000412686 EIF3AQ14152 1382 aaKnown RBP10.96□□□□□ -0.65
CPSF4-202ENST00000412686 CDK19Q9BWU1 502 aa10.96□□□□□ -0.65
CPSF4-202ENST00000412686 FOXO3O43524 673 aa10.95□□□□□ -0.66
CPSF4-202ENST00000412686 PMFBP1Q8TBY8 1022 aa10.95□□□□□ -0.66
CPSF4-202ENST00000412686 CABP2Q9NPB3 220 aa10.95□□□□□ -0.66
CPSF4-202ENST00000412686 ITSN1Q15811 1721 aa10.95□□□□□ -0.66
CPSF4-202ENST00000412686 PXDNQ92626 1479 aa10.94□□□□□ -0.66
CPSF4-202ENST00000412686 USP47Q96K76 1375 aa10.94□□□□□ -0.66
CPSF4-202ENST00000412686 NUDT16Q96DE0 195 aaKnown RBP10.94□□□□□ -0.66
CPSF4-202ENST00000412686 PHF8Q9UPP1 1060 aa10.94□□□□□ -0.66
CPSF4-202ENST00000412686 MED1Q15648 1581 aaPredicted RBP10.94□□□□□ -0.66
CPSF4-202ENST00000412686 SOS2Q07890 1332 aaPredicted RBP10.93□□□□□ -0.66
CPSF4-202ENST00000412686 SHPRHQ149N8 1683 aa10.93□□□□□ -0.66
CPSF4-202ENST00000412686 ST20-MTHFSA0A0A6YYL1 179 aa10.93□□□□□ -0.66
CPSF4-202ENST00000412686 SRPK2P78362 688 aaKnown RBP10.93□□□□□ -0.66
CPSF4-202ENST00000412686 NPHP3Q7Z494 1330 aa10.92□□□□□ -0.66
CPSF4-202ENST00000412686 JCADQ9P266 1359 aa10.91□□□□□ -0.66
CPSF4-202ENST00000412686 SBNO2Q9Y2G9 1366 aa10.91□□□□□ -0.66
CPSF4-202ENST00000412686 TESK2Q96S53 571 aa10.91□□□□□ -0.66
CPSF4-202ENST00000412686 TRPM3Q9HCF6 1732 aaPredicted RBP10.91□□□□□ -0.66
CPSF4-202ENST00000412686 PPIP5K1Q6PFW1 1433 aa10.91□□□□□ -0.66
CPSF4-202ENST00000412686 LRP6O75581 1613 aa10.91□□□□□ -0.66
CPSF4-202ENST00000412686 PNPLA6Q8IY17 1366 aa10.9□□□□□ -0.66
CPSF4-202ENST00000412686 EVC2Q86UK5 1308 aa10.9□□□□□ -0.66
CPSF4-202ENST00000412686 KRT28Q7Z3Y7 464 aa10.89□□□□□ -0.67
CPSF4-202ENST00000412686 LRRC59Q96AG4 307 aaKnown RBP10.89□□□□□ -0.67
CPSF4-202ENST00000412686 FOXD4L1Q9NU39 408 aa10.89□□□□□ -0.67
CPSF4-202ENST00000412686 CCDC61Q9Y6R9 512 aa10.89□□□□□ -0.67
CPSF4-202ENST00000412686 U3KPZ7 1027 aaPredicted RBP10.89□□□□□ -0.67
CPSF4-202ENST00000412686 DISP3Q9P2K9 1392 aa10.89□□□□□ -0.67
CPSF4-202ENST00000412686 PLEKHG5O94827 1062 aa10.88□□□□□ -0.67
CPSF4-202ENST00000412686 C1QBPQ07021 282 aaKnown RBP10.88□□□□□ -0.67
CPSF4-202ENST00000412686 NGDNQ8NEJ9 315 aaKnown RBP10.88□□□□□ -0.67
CPSF4-202ENST00000412686 COL22A1Q8NFW1 1626 aaPredicted RBP10.87□□□□□ -0.67
CPSF4-202ENST00000412686 ACEP12821 1306 aa10.87□□□□□ -0.67
CPSF4-202ENST00000412686 SPATA31A3Q5VYP0 1347 aa10.87□□□□□ -0.67
CPSF4-202ENST00000412686 TNS3Q68CZ2 1445 aa10.87□□□□□ -0.67
CPSF4-202ENST00000412686 NUTM2BA6NNL0 878 aaPredicted RBP10.87□□□□□ -0.67
CPSF4-202ENST00000412686 NUTM2EB1AL46 878 aaPredicted RBP10.87□□□□□ -0.67
CPSF4-202ENST00000412686 PSME1Q06323 249 aa10.87□□□□□ -0.67
CPSF4-202ENST00000412686 NUTM2AQ8IVF1 878 aaPredicted RBP10.87□□□□□ -0.67
CPSF4-202ENST00000412686 CABP1Q9NZU7 370 aa10.87□□□□□ -0.67
CPSF4-202ENST00000412686 ALS2Q96Q42 1657 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms