RNA–Protein interactions for RNA: ENST00000411913.1

HMGB3P2-201, Transcript of high mobility group box 3 pseudogene 2, humanhuman

BASIC

Gene HMGB3P2, Length 584 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P2-201ENST00000411913 NFX1Q12986 1120 aaKnown RBP7.36□□□□□ -1.23
HMGB3P2-201ENST00000411913 SNIP1Q8TAD8 396 aaKnown RBP7.36□□□□□ -1.23
HMGB3P2-201ENST00000411913 WNT7AO00755 349 aa7.35□□□□□ -1.23
HMGB3P2-201ENST00000411913 SMPD1P17405 629 aa7.35□□□□□ -1.23
HMGB3P2-201ENST00000411913 MSS51Q4VC12 460 aa7.35□□□□□ -1.23
HMGB3P2-201ENST00000411913 ATP13A2Q9NQ11 1180 aa7.35□□□□□ -1.23
HMGB3P2-201ENST00000411913 TRIM32Q13049 653 aa7.34□□□□□ -1.23
HMGB3P2-201ENST00000411913 RNF19BQ6ZMZ0 732 aa7.34□□□□□ -1.23
HMGB3P2-201ENST00000411913 SENP2Q9HC62 589 aa7.34□□□□□ -1.23
HMGB3P2-201ENST00000411913 WIPF1O43516 503 aa7.33□□□□□ -1.24
HMGB3P2-201ENST00000411913 Q3C1V9 767 aa7.33□□□□□ -1.24
HMGB3P2-201ENST00000411913 J3QL48 77 aa7.32□□□□□ -1.24
HMGB3P2-201ENST00000411913 SNRPBP14678 240 aaKnown RBP7.32□□□□□ -1.24
HMGB3P2-201ENST00000411913 MRGPRX2Q96LB1 330 aa7.32□□□□□ -1.24
HMGB3P2-201ENST00000411913 TESPA1A2RU30 521 aaPredicted RBP7.31□□□□□ -1.24
HMGB3P2-201ENST00000411913 TERTO14746 1132 aaKnown RBP7.31□□□□□ -1.24
HMGB3P2-201ENST00000411913 TRIM47Q96LD4 638 aa7.31□□□□□ -1.24
HMGB3P2-201ENST00000411913 PHOX2BQ99453 314 aa7.3□□□□□ -1.24
HMGB3P2-201ENST00000411913 REPIN1Q9BWE0 567 aaKnown RBP7.3□□□□□ -1.24
HMGB3P2-201ENST00000411913 MMP16P51512 607 aa7.29□□□□□ -1.24
HMGB3P2-201ENST00000411913 CCDC24Q8N4L8 307 aa7.29□□□□□ -1.24
HMGB3P2-201ENST00000411913 KIFC2Q96AC6 838 aa7.29□□□□□ -1.24
HMGB3P2-201ENST00000411913 GPR37O15354 613 aa7.28□□□□□ -1.24
HMGB3P2-201ENST00000411913 HPS1Q92902 700 aa7.28□□□□□ -1.24
HMGB3P2-201ENST00000411913 USB1Q9BQ65 265 aaKnown RBP7.28□□□□□ -1.24
HMGB3P2-201ENST00000411913 RC3H1Q5TC82 1133 aaKnown RBP7.27□□□□□ -1.25
HMGB3P2-201ENST00000411913 SLC16A10Q8TF71 515 aa7.26□□□□□ -1.25
HMGB3P2-201ENST00000411913 KDM4AO75164 1064 aa7.25□□□□□ -1.25
HMGB3P2-201ENST00000411913 DXOO77932 396 aaKnown RBP7.25□□□□□ -1.25
HMGB3P2-201ENST00000411913 FAM181BA6NEQ2 426 aa7.24□□□□□ -1.25
HMGB3P2-201ENST00000411913 ALDH1A1P00352 501 aa7.24□□□□□ -1.25
HMGB3P2-201ENST00000411913 CD46P15529 392 aa7.24□□□□□ -1.25
HMGB3P2-201ENST00000411913 WNT7BP56706 349 aa7.24□□□□□ -1.25
HMGB3P2-201ENST00000411913 GPIHBP1Q8IV16 184 aa7.24□□□□□ -1.25
HMGB3P2-201ENST00000411913 LCE2CQ5TA81 110 aa7.23□□□□□ -1.25
HMGB3P2-201ENST00000411913 USP46P62068 366 aa7.22□□□□□ -1.25
HMGB3P2-201ENST00000411913 SKOR1P84550 965 aa7.22□□□□□ -1.25
HMGB3P2-201ENST00000411913 NXF1Q9UBU9 619 aaKnown RBP7.21□□□□□ -1.26
HMGB3P2-201ENST00000411913 HLA-CQ95604 372 aa7.2□□□□□ -1.26
HMGB3P2-201ENST00000411913 WASF2Q9Y6W5 498 aa7.2□□□□□ -1.26
HMGB3P2-201ENST00000411913 EHBP1Q8NDI1 1231 aa7.19□□□□□ -1.26
HMGB3P2-201ENST00000411913 CAPN5O15484 640 aaPredicted RBP7.18□□□□□ -1.26
HMGB3P2-201ENST00000411913 JUNDP17535 347 aa7.18□□□□□ -1.26
HMGB3P2-201ENST00000411913 MDM2Q00987 491 aaPredicted RBP7.18□□□□□ -1.26
HMGB3P2-201ENST00000411913 IRF7Q92985 503 aa7.18□□□□□ -1.26
HMGB3P2-201ENST00000411913 HOXA2O43364 376 aa7.17□□□□□ -1.26
HMGB3P2-201ENST00000411913 BMP1P13497 986 aa7.17□□□□□ -1.26
HMGB3P2-201ENST00000411913 GMPRP36959 345 aa7.17□□□□□ -1.26
HMGB3P2-201ENST00000411913 ZSCAN1Q8NBB4 408 aa7.17□□□□□ -1.26
HMGB3P2-201ENST00000411913 GUCA2AQ02747 115 aa7.16□□□□□ -1.26
HMGB3P2-201ENST00000411913 MAP2K5Q13163 448 aa7.16□□□□□ -1.26
HMGB3P2-201ENST00000411913 SYMPKQ92797 1274 aaKnown RBP7.16□□□□□ -1.26
HMGB3P2-201ENST00000411913 NUDT12Q9BQG2 462 aa7.16□□□□□ -1.26
HMGB3P2-201ENST00000411913 VEGFBP49765 207 aa7.15□□□□□ -1.26
HMGB3P2-201ENST00000411913 TRIM46Q7Z4K8 759 aa7.15□□□□□ -1.26
HMGB3P2-201ENST00000411913 NPAS3Q8IXF0 933 aa7.15□□□□□ -1.26
HMGB3P2-201ENST00000411913 IRF6O14896 467 aa7.14□□□□□ -1.27
HMGB3P2-201ENST00000411913 SIAH2O43255 324 aa7.14□□□□□ -1.27
HMGB3P2-201ENST00000411913 PTCRAQ6ISU1 281 aaPredicted RBP7.14□□□□□ -1.27
HMGB3P2-201ENST00000411913 NUTM1Q86Y26 1132 aa7.14□□□□□ -1.27
HMGB3P2-201ENST00000411913 RETREG3Q86VR2 466 aa7.13□□□□□ -1.27
HMGB3P2-201ENST00000411913 KRI1Q8N9T8 703 aaKnown RBP7.12□□□□□ -1.27
HMGB3P2-201ENST00000411913 MINK1Q8N4C8 1332 aaPredicted RBP7.11□□□□□ -1.27
HMGB3P2-201ENST00000411913 H3BM21 787 aa7.11□□□□□ -1.27
HMGB3P2-201ENST00000411913 C6orf229H3BNL8 230 aa7.11□□□□□ -1.27
HMGB3P2-201ENST00000411913 TULP1O00294 542 aaPredicted RBP7.11□□□□□ -1.27
HMGB3P2-201ENST00000411913 ZFP42Q96MM3 310 aa7.11□□□□□ -1.27
HMGB3P2-201ENST00000411913 CCNYL3P0C7X3 344 aa7.1□□□□□ -1.27
HMGB3P2-201ENST00000411913 MS4A1P11836 297 aa7.1□□□□□ -1.27
HMGB3P2-201ENST00000411913 SH3BP2P78314 561 aa7.1□□□□□ -1.27
HMGB3P2-201ENST00000411913 GPCPD1Q9NPB8 672 aa7.1□□□□□ -1.27
HMGB3P2-201ENST00000411913 FDX1P10109 184 aa7.09□□□□□ -1.27
HMGB3P2-201ENST00000411913 CLCN1P35523 988 aa7.09□□□□□ -1.27
HMGB3P2-201ENST00000411913 LINC01559Q495D7 138 aa7.09□□□□□ -1.27
HMGB3P2-201ENST00000411913 ERBB4Q15303 1308 aa7.08□□□□□ -1.28
HMGB3P2-201ENST00000411913 PLEKHG3A1L390 1219 aa7.08□□□□□ -1.28
HMGB3P2-201ENST00000411913 LORP23490 312 aaPredicted RBP7.08□□□□□ -1.28
HMGB3P2-201ENST00000411913 SCARF1Q14162 830 aa7.08□□□□□ -1.28
HMGB3P2-201ENST00000411913 FAM217BQ9NTX9 383 aaPredicted RBP7.08□□□□□ -1.28
HMGB3P2-201ENST00000411913 BAP1Q92560 729 aa7.07□□□□□ -1.28
HMGB3P2-201ENST00000411913 CCDC102AQ96A19 550 aa7.07□□□□□ -1.28
HMGB3P2-201ENST00000411913 TLL2Q9Y6L7 1015 aa7.07□□□□□ -1.28
HMGB3P2-201ENST00000411913 VARSP26640 1264 aaKnown RBP7.06□□□□□ -1.28
HMGB3P2-201ENST00000411913 PLCB2Q00722 1185 aa7.06□□□□□ -1.28
HMGB3P2-201ENST00000411913 NNTQ13423 1086 aa7.06□□□□□ -1.28
HMGB3P2-201ENST00000411913 PTPRNQ16849 979 aa7.06□□□□□ -1.28
HMGB3P2-201ENST00000411913 MRPL14Q6P1L8 145 aaKnown RBP7.06□□□□□ -1.28
HMGB3P2-201ENST00000411913 UNC93B1Q9H1C4 597 aa7.06□□□□□ -1.28
HMGB3P2-201ENST00000411913 EVA1BQ9NVM1 165 aa7.06□□□□□ -1.28
HMGB3P2-201ENST00000411913 PURBQ96QR8 312 aaKnown RBP7.05□□□□□ -1.28
HMGB3P2-201ENST00000411913 PCDHGC3Q9UN70 934 aa7.05□□□□□ -1.28
HMGB3P2-201ENST00000411913 WDR4P57081 412 aaKnown RBP7.04□□□□□ -1.28
HMGB3P2-201ENST00000411913 KCNH2Q12809 1159 aa7.04□□□□□ -1.28
HMGB3P2-201ENST00000411913 ZNF511Q8NB15 262 aa7.04□□□□□ -1.28
HMGB3P2-201ENST00000411913 PRR7Q8TB68 274 aa7.03□□□□□ -1.28
HMGB3P2-201ENST00000411913 SOBPA7XYQ1 873 aa7.02□□□□□ -1.29
HMGB3P2-201ENST00000411913 ADH1CP00326 375 aa7.02□□□□□ -1.29
HMGB3P2-201ENST00000411913 MPNDQ8N594 471 aa7.02□□□□□ -1.29
HMGB3P2-201ENST00000411913 MAN1A2O60476 641 aa7.01□□□□□ -1.29
HMGB3P2-201ENST00000411913 TIMP2P16035 220 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms