RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 COL16A1Q07092 1604 aaPredicted RBP21.29■■□□□ 1
NIF3L1-205ENST00000409588 IFT172Q9UG01 1749 aa21.28■■□□□ 1
NIF3L1-205ENST00000409588 MYOM2P54296 1465 aa21.27■■□□□ 1
NIF3L1-205ENST00000409588 DHX57Q6P158 1386 aaKnown RBP21.27■■□□□ 1
NIF3L1-205ENST00000409588 RGS17Q9UGC6 210 aaPredicted RBP21.27■■□□□ 1
NIF3L1-205ENST00000409588 ASXL1Q8IXJ9 1541 aa21.27■■□□□ 1
NIF3L1-205ENST00000409588 C1orf167Q5SNV9 1468 aa21.26■□□□□ 0.99
NIF3L1-205ENST00000409588 NRXN1Q9ULB1 1477 aa21.26■□□□□ 0.99
NIF3L1-205ENST00000409588 STK26Q9P289 416 aa21.26■□□□□ 0.99
NIF3L1-205ENST00000409588 TMEM132EQ6IEE7 984 aa21.25■□□□□ 0.99
NIF3L1-205ENST00000409588 NALCNQ8IZF0 1738 aa21.24■□□□□ 0.99
NIF3L1-205ENST00000409588 YTHDC2Q9H6S0 1430 aaKnown RBP21.23■□□□□ 0.99
NIF3L1-205ENST00000409588 CFAP70Q5T0N1 1121 aa21.22■□□□□ 0.99
NIF3L1-205ENST00000409588 WAPLQ7Z5K2 1190 aa21.21■□□□□ 0.99
NIF3L1-205ENST00000409588 DCAF11Q8TEB1 546 aa21.21■□□□□ 0.99
NIF3L1-205ENST00000409588 MEX3CQ5U5Q3 659 aaKnown RBP21.2■□□□□ 0.98
NIF3L1-205ENST00000409588 ZNF772Q68DY9 489 aaPredicted RBP21.2■□□□□ 0.98
NIF3L1-205ENST00000409588 ORAI2Q96SN7 254 aa21.2■□□□□ 0.98
NIF3L1-205ENST00000409588 SHPRHQ149N8 1683 aa21.2■□□□□ 0.98
NIF3L1-205ENST00000409588 LAMC1P11047 1609 aa21.19■□□□□ 0.98
NIF3L1-205ENST00000409588 NHSL1Q5SYE7 1610 aa21.19■□□□□ 0.98
NIF3L1-205ENST00000409588 U3KPZ7 1027 aaPredicted RBP21.19■□□□□ 0.98
NIF3L1-205ENST00000409588 SOS2Q07890 1332 aaPredicted RBP21.19■□□□□ 0.98
NIF3L1-205ENST00000409588 ESCO1Q5FWF5 840 aa21.18■□□□□ 0.98
NIF3L1-205ENST00000409588 CDC42BPGQ6DT37 1551 aa21.18■□□□□ 0.98
NIF3L1-205ENST00000409588 NPHP3Q7Z494 1330 aa21.17■□□□□ 0.98
NIF3L1-205ENST00000409588 KNDC1Q76NI1 1749 aa21.16■□□□□ 0.98
NIF3L1-205ENST00000409588 POTEAQ6S8J7 498 aa21.15■□□□□ 0.98
NIF3L1-205ENST00000409588 KDM2AQ9Y2K7 1162 aa21.15■□□□□ 0.98
NIF3L1-205ENST00000409588 DDX17Q92841 729 aaKnown RBP21.13■□□□□ 0.97
NIF3L1-205ENST00000409588 POGKQ9P215 609 aa21.13■□□□□ 0.97
NIF3L1-205ENST00000409588 PNPLA6Q8IY17 1366 aa21.12■□□□□ 0.97
NIF3L1-205ENST00000409588 NUTM2BA6NNL0 878 aaPredicted RBP21.12■□□□□ 0.97
NIF3L1-205ENST00000409588 NUTM2EB1AL46 878 aaPredicted RBP21.12■□□□□ 0.97
NIF3L1-205ENST00000409588 NUTM2AQ8IVF1 878 aaPredicted RBP21.12■□□□□ 0.97
NIF3L1-205ENST00000409588 PLEKHH1Q9ULM0 1364 aa21.11■□□□□ 0.97
NIF3L1-205ENST00000409588 DLC1Q96QB1 1528 aa21.11■□□□□ 0.97
NIF3L1-205ENST00000409588 PRAM1Q96QH2 718 aa21.11■□□□□ 0.97
NIF3L1-205ENST00000409588 LRP6O75581 1613 aa21.1■□□□□ 0.97
NIF3L1-205ENST00000409588 FOXO3O43524 673 aa21.09■□□□□ 0.97
NIF3L1-205ENST00000409588 PSME1Q06323 249 aa21.06■□□□□ 0.96
NIF3L1-205ENST00000409588 TRAK1Q9UPV9 953 aa21.06■□□□□ 0.96
NIF3L1-205ENST00000409588 ADGRB1O14514 1584 aa21.06■□□□□ 0.96
NIF3L1-205ENST00000409588 NUTM2FA1L443 756 aa21.05■□□□□ 0.96
NIF3L1-205ENST00000409588 RXRBP28702 533 aa21.04■□□□□ 0.96
NIF3L1-205ENST00000409588 PHF8Q9UPP1 1060 aa21.04■□□□□ 0.96
NIF3L1-205ENST00000409588 EIF3AQ14152 1382 aaKnown RBP21.04■□□□□ 0.96
NIF3L1-205ENST00000409588 NGLY1Q96IV0 654 aa21.03■□□□□ 0.96
NIF3L1-205ENST00000409588 AFF2P51816 1311 aa21.03■□□□□ 0.96
NIF3L1-205ENST00000409588 FMN2Q9NZ56 1722 aa21.02■□□□□ 0.96
NIF3L1-205ENST00000409588 SAFB2Q14151 953 aaKnown RBP eCLIP21.02■□□□□ 0.96
NIF3L1-205ENST00000409588 C8orf37Q96NL8 207 aa21.02■□□□□ 0.96
NIF3L1-205ENST00000409588 PXDNQ92626 1479 aa21.01■□□□□ 0.95
NIF3L1-205ENST00000409588 KRT28Q7Z3Y7 464 aa21.01■□□□□ 0.95
NIF3L1-205ENST00000409588 SPINK5Q9NQ38 1064 aaPredicted RBP21.01■□□□□ 0.95
NIF3L1-205ENST00000409588 ANKARQ7Z5J8 1434 aa21.01■□□□□ 0.95
NIF3L1-205ENST00000409588 KCNA4P22459 653 aa21■□□□□ 0.95
NIF3L1-205ENST00000409588 KIF1AQ12756 1690 aa20.99■□□□□ 0.95
NIF3L1-205ENST00000409588 QTRT2Q9H974 415 aaKnown RBP20.99■□□□□ 0.95
NIF3L1-205ENST00000409588 SPATA31A3Q5VYP0 1347 aa20.99■□□□□ 0.95
NIF3L1-205ENST00000409588 WASLO00401 505 aaPredicted RBP20.98■□□□□ 0.95
NIF3L1-205ENST00000409588 ADAMTS2O95450 1211 aa20.98■□□□□ 0.95
NIF3L1-205ENST00000409588 FNBP4Q8N3X1 1017 aaPredicted RBP20.98■□□□□ 0.95
NIF3L1-205ENST00000409588 COL22A1Q8NFW1 1626 aaPredicted RBP20.97■□□□□ 0.95
NIF3L1-205ENST00000409588 ADGRB2O60241 1585 aa20.97■□□□□ 0.95
NIF3L1-205ENST00000409588 CDK12Q9NYV4 1490 aaPredicted RBP20.96■□□□□ 0.95
NIF3L1-205ENST00000409588 RBM6P78332 1123 aaKnown RBP20.96■□□□□ 0.95
NIF3L1-205ENST00000409588 SBNO1A3KN83 1393 aa20.96■□□□□ 0.95
NIF3L1-205ENST00000409588 CAPN15O75808 1086 aa20.95■□□□□ 0.94
NIF3L1-205ENST00000409588 XPCQ01831 940 aaPredicted RBP20.95■□□□□ 0.94
NIF3L1-205ENST00000409588 MINK1Q8N4C8 1332 aaPredicted RBP20.95■□□□□ 0.94
NIF3L1-205ENST00000409588 KIAA1210Q9ULL0 1709 aa20.95■□□□□ 0.94
NIF3L1-205ENST00000409588 USP21Q9UK80 565 aa20.94■□□□□ 0.94
NIF3L1-205ENST00000409588 HIRIP3Q9BW71 556 aaPredicted RBP20.93■□□□□ 0.94
NIF3L1-205ENST00000409588 TRPC5Q9UL62 973 aaPredicted RBP20.93■□□□□ 0.94
NIF3L1-205ENST00000409588 DSG3P32926 999 aa20.92■□□□□ 0.94
NIF3L1-205ENST00000409588 ARHGEF10O15013 1369 aa20.92■□□□□ 0.94
NIF3L1-205ENST00000409588 GPRASP1Q5JY77 1395 aa20.91■□□□□ 0.94
NIF3L1-205ENST00000409588 L3MBTL2Q969R5 705 aa20.91■□□□□ 0.94
NIF3L1-205ENST00000409588 PMFBP1Q8TBY8 1022 aa20.9■□□□□ 0.94
NIF3L1-205ENST00000409588 NBPF1Q3BBV0 1214 aa20.89■□□□□ 0.93
NIF3L1-205ENST00000409588 TULP4Q9NRJ4 1543 aa20.88■□□□□ 0.93
NIF3L1-205ENST00000409588 TNS3Q68CZ2 1445 aa20.88■□□□□ 0.93
NIF3L1-205ENST00000409588 TRIM26Q12899 539 aaPredicted RBP20.88■□□□□ 0.93
NIF3L1-205ENST00000409588 HAP1P54257 671 aaPredicted RBP20.87■□□□□ 0.93
NIF3L1-205ENST00000409588 NGDNQ8NEJ9 315 aaKnown RBP20.87■□□□□ 0.93
NIF3L1-205ENST00000409588 NUDT16Q96DE0 195 aaKnown RBP20.87■□□□□ 0.93
NIF3L1-205ENST00000409588 CDK19Q9BWU1 502 aa20.87■□□□□ 0.93
NIF3L1-205ENST00000409588 RGPD8O14715 1765 aaPredicted RBP20.87■□□□□ 0.93
NIF3L1-205ENST00000409588 SIN3AQ96ST3 1273 aa20.86■□□□□ 0.93
NIF3L1-205ENST00000409588 CCDC61Q9Y6R9 512 aa20.86■□□□□ 0.93
NIF3L1-205ENST00000409588 PRR36Q9H6K5 1346 aa20.85■□□□□ 0.93
NIF3L1-205ENST00000409588 NEUROD1Q13562 356 aa20.85■□□□□ 0.93
NIF3L1-205ENST00000409588 LMOD2Q6P5Q4 547 aa20.84■□□□□ 0.93
NIF3L1-205ENST00000409588 USP32Q8NFA0 1604 aa20.84■□□□□ 0.93
NIF3L1-205ENST00000409588 ARHGEF28Q8N1W1 1705 aaKnown RBP20.84■□□□□ 0.93
NIF3L1-205ENST00000409588 CENPJQ9HC77 1338 aaPredicted RBP20.83■□□□□ 0.93
NIF3L1-205ENST00000409588 UNC5CLQ8IV45 518 aa20.83■□□□□ 0.93
NIF3L1-205ENST00000409588 BCL9LQ86UU0 1499 aa20.82■□□□□ 0.92
NIF3L1-205ENST00000409588 PLEKHG3A1L390 1219 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms