RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 RIPK4P57078 832 aa14.92□□□□□ -0.02
HMGB1-206ENST00000405805 MBD5Q9P267 1494 aa14.92□□□□□ -0.02
HMGB1-206ENST00000405805 PRAG1Q86YV5 1406 aa14.92□□□□□ -0.02
HMGB1-206ENST00000405805 BBXQ8WY36 941 aaPredicted RBP14.92□□□□□ -0.02
HMGB1-206ENST00000405805 PLCH2O75038 1416 aa14.91□□□□□ -0.02
HMGB1-206ENST00000405805 LRPPRCP42704 1394 aaKnown RBP14.91□□□□□ -0.02
HMGB1-206ENST00000405805 PARD3Q8TEW0 1356 aa14.91□□□□□ -0.02
HMGB1-206ENST00000405805 IPO8O15397 1037 aaKnown RBP14.9□□□□□ -0.02
HMGB1-206ENST00000405805 PDIA4P13667 645 aaKnown RBP14.9□□□□□ -0.02
HMGB1-206ENST00000405805 BCL11BQ9C0K0 894 aaPredicted RBP14.89□□□□□ -0.03
HMGB1-206ENST00000405805 PCDHB15Q9Y5E8 787 aa14.89□□□□□ -0.03
HMGB1-206ENST00000405805 PDE3AQ14432 1141 aa14.89□□□□□ -0.03
HMGB1-206ENST00000405805 ZHX1Q9UKY1 873 aaPredicted RBP14.89□□□□□ -0.03
HMGB1-206ENST00000405805 VGFO15240 615 aaPredicted RBP14.88□□□□□ -0.03
HMGB1-206ENST00000405805 FAM69CQ0P6D2 419 aa14.88□□□□□ -0.03
HMGB1-206ENST00000405805 PRDM10Q9NQV6 1147 aa14.88□□□□□ -0.03
HMGB1-206ENST00000405805 ABCA8O94911 1581 aa14.88□□□□□ -0.03
HMGB1-206ENST00000405805 TRAK2O60296 914 aa14.88□□□□□ -0.03
HMGB1-206ENST00000405805 RLBP1P12271 317 aa14.88□□□□□ -0.03
HMGB1-206ENST00000405805 FANCAO15360 1455 aa14.87□□□□□ -0.03
HMGB1-206ENST00000405805 ADGRL1O94910 1474 aa14.87□□□□□ -0.03
HMGB1-206ENST00000405805 SHANK2Q9UPX8 1470 aa14.87□□□□□ -0.03
HMGB1-206ENST00000405805 RARSP54136 660 aaKnown RBP14.87□□□□□ -0.03
HMGB1-206ENST00000405805 C14orf37Q86TY3 774 aa14.87□□□□□ -0.03
HMGB1-206ENST00000405805 TBC1D2Q9BYX2 928 aa14.87□□□□□ -0.03
HMGB1-206ENST00000405805 FBLN1P23142 703 aa14.86□□□□□ -0.03
HMGB1-206ENST00000405805 CHMP5Q9NZZ3 219 aa14.86□□□□□ -0.03
HMGB1-206ENST00000405805 ERCC6L2Q5T890 1561 aa14.86□□□□□ -0.03
HMGB1-206ENST00000405805 SLC4A10Q6U841 1118 aa14.86□□□□□ -0.03
HMGB1-206ENST00000405805 GBP4Q96PP9 640 aa14.86□□□□□ -0.03
HMGB1-206ENST00000405805 THUMPD2Q9BTF0 503 aaKnown RBP14.86□□□□□ -0.03
HMGB1-206ENST00000405805 NOB1Q9ULX3 412 aaKnown RBP14.86□□□□□ -0.03
HMGB1-206ENST00000405805 DDX49Q9Y6V7 483 aaKnown RBP14.85□□□□□ -0.03
HMGB1-206ENST00000405805 A2MP01023 1474 aa14.85□□□□□ -0.03
HMGB1-206ENST00000405805 PLCD3Q8N3E9 789 aa14.84□□□□□ -0.03
HMGB1-206ENST00000405805 HDGFL2Q7Z4V5 671 aaPredicted RBP14.83□□□□□ -0.03
HMGB1-206ENST00000405805 DDX19BQ9UMR2 479 aa14.83□□□□□ -0.03
HMGB1-206ENST00000405805 UHRF1BP1Q6BDS2 1440 aa14.83□□□□□ -0.04
HMGB1-206ENST00000405805 EVC2Q86UK5 1308 aa14.83□□□□□ -0.04
HMGB1-206ENST00000405805 STAC3Q96MF2 364 aa14.83□□□□□ -0.04
HMGB1-206ENST00000405805 PANK2Q9BZ23 570 aa14.83□□□□□ -0.04
HMGB1-206ENST00000405805 CARD14Q9BXL6 1004 aa14.82□□□□□ -0.04
HMGB1-206ENST00000405805 ZNF771Q7L3S4 317 aaPredicted RBP14.82□□□□□ -0.04
HMGB1-206ENST00000405805 MCM4P33991 863 aa14.81□□□□□ -0.04
HMGB1-206ENST00000405805 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.81□□□□□ -0.045e-6■■■■□ 21.7
HMGB1-206ENST00000405805 ABCC2Q92887 1545 aa14.81□□□□□ -0.04
HMGB1-206ENST00000405805 CD109Q6YHK3 1445 aa14.81□□□□□ -0.04
HMGB1-206ENST00000405805 SAMD9LQ8IVG5 1584 aa14.81□□□□□ -0.04
HMGB1-206ENST00000405805 MVPQ14764 893 aaKnown RBP14.81□□□□□ -0.04
HMGB1-206ENST00000405805 SSH1Q8WYL5 1049 aa14.81□□□□□ -0.04
HMGB1-206ENST00000405805 PAXIP1Q6ZW49 1069 aaPredicted RBP14.8□□□□□ -0.04
HMGB1-206ENST00000405805 TERF2IPQ9NYB0 399 aa14.8□□□□□ -0.04
HMGB1-206ENST00000405805 KDM2BQ8NHM5 1336 aa14.8□□□□□ -0.04
HMGB1-206ENST00000405805 TMEM57Q8N5G2 664 aa14.8□□□□□ -0.04
HMGB1-206ENST00000405805 DIAPH1O60610 1272 aaKnown RBP14.8□□□□□ -0.04
HMGB1-206ENST00000405805 NECTIN2Q92692 538 aa14.8□□□□□ -0.04
HMGB1-206ENST00000405805 R3HCC1Q9Y3T6 440 aaKnown RBP14.8□□□□□ -0.04
HMGB1-206ENST00000405805 DUOX2Q9NRD8 1548 aa14.79□□□□□ -0.04
HMGB1-206ENST00000405805 APPP05067 770 aa14.79□□□□□ -0.04
HMGB1-206ENST00000405805 ASXL2Q76L83 1435 aa14.79□□□□□ -0.04
HMGB1-206ENST00000405805 CASC1Q6TDU7 716 aa14.79□□□□□ -0.04
HMGB1-206ENST00000405805 FBXO31Q5XUX0 539 aaPredicted RBP14.79□□□□□ -0.04
HMGB1-206ENST00000405805 NKTRP30414 1462 aaKnown RBP14.78□□□□□ -0.04
HMGB1-206ENST00000405805 IDI1Q13907 227 aa14.78□□□□□ -0.04
HMGB1-206ENST00000405805 MPNDQ8N594 471 aa14.78□□□□□ -0.04
HMGB1-206ENST00000405805 PRAM1Q96QH2 718 aa14.78□□□□□ -0.04
HMGB1-206ENST00000405805 NSD3Q9BZ95 1437 aa14.78□□□□□ -0.04
HMGB1-206ENST00000405805 TTC37Q6PGP7 1564 aa14.78□□□□□ -0.04
HMGB1-206ENST00000405805 ARHGEF12Q9NZN5 1544 aa14.78□□□□□ -0.04
HMGB1-206ENST00000405805 CALD1Q05682 793 aaKnown RBP14.78□□□□□ -0.04
HMGB1-206ENST00000405805 PLA2R1Q13018 1463 aa14.78□□□□□ -0.04
HMGB1-206ENST00000405805 PRKAR2BP31323 418 aa14.77□□□□□ -0.04
HMGB1-206ENST00000405805 TAOK2Q9UL54 1235 aa14.77□□□□□ -0.04
HMGB1-206ENST00000405805 NOS1P29475 1434 aa14.77□□□□□ -0.04
HMGB1-206ENST00000405805 CDC42BPAQ5VT25 1732 aa14.77□□□□□ -0.04
HMGB1-206ENST00000405805 ADGBQ8N7X0 1667 aa14.77□□□□□ -0.04
HMGB1-206ENST00000405805 DDX11L8A8MPP1 907 aa14.77□□□□□ -0.05
HMGB1-206ENST00000405805 ATF7IPQ6VMQ6 1270 aa14.76□□□□□ -0.05
HMGB1-206ENST00000405805 MCTP1Q6DN14 999 aa14.76□□□□□ -0.05
HMGB1-206ENST00000405805 AEBP1Q8IUX7 1158 aa14.76□□□□□ -0.05
HMGB1-206ENST00000405805 TRIM27P14373 513 aa14.75□□□□□ -0.05
HMGB1-206ENST00000405805 TRIM6-TRIM34B2RNG4 842 aa14.75□□□□□ -0.05
HMGB1-206ENST00000405805 CHMP4BQ9H444 224 aaKnown RBP14.75□□□□□ -0.05
HMGB1-206ENST00000405805 SCAF11Q99590 1463 aaKnown RBP14.75□□□□□ -0.05
HMGB1-206ENST00000405805 WDR7Q9Y4E6 1490 aa14.74□□□□□ -0.05
HMGB1-206ENST00000405805 BCORL1Q5H9F3 1711 aa14.74□□□□□ -0.05
HMGB1-206ENST00000405805 TMPOP42166 694 aaKnown RBP14.73□□□□□ -0.05
HMGB1-206ENST00000405805 RNF214Q8ND24 703 aa14.73□□□□□ -0.05
HMGB1-206ENST00000405805 TBC1D32Q96NH3 1257 aa14.73□□□□□ -0.05
HMGB1-206ENST00000405805 NGEFQ8N5V2 710 aa14.73□□□□□ -0.05
HMGB1-206ENST00000405805 KDM5CP41229 1560 aa14.72□□□□□ -0.05
HMGB1-206ENST00000405805 XRCC6P12956 609 aaKnown RBP eCLIP14.72□□□□□ -0.05
HMGB1-206ENST00000405805 DCTN1Q14203 1278 aa14.72□□□□□ -0.05
HMGB1-206ENST00000405805 WDR63Q8IWG1 891 aa14.72□□□□□ -0.05
HMGB1-206ENST00000405805 RBM42Q9BTD8 480 aaKnown RBP14.72□□□□□ -0.05
HMGB1-206ENST00000405805 CHMP4AQ9BY43 222 aa14.72□□□□□ -0.05
HMGB1-206ENST00000405805 CABP1Q9NZU7 370 aa14.72□□□□□ -0.05
HMGB1-206ENST00000405805 CFAP65Q6ZU64 1925 aaKnown RBP14.72□□□□□ -0.05
HMGB1-206ENST00000405805 CHD1O14646 1710 aa14.71□□□□□ -0.05
HMGB1-206ENST00000405805 RILPL2Q969X0 211 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 123.3 ms