RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, human

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-208	ENST00000404484	TMF1	P82094	1093 aa		29.09	■■■□□ 2.25
TPM1-208	ENST00000404484	TMEM132E	Q6IEE7	984 aa		29.08	■■■□□ 2.25
TPM1-208	ENST00000404484	C19orf44	Q9H6X5	657 aa		29.07	■■■□□ 2.24
TPM1-208	ENST00000404484	ROBO2	Q9HCK4	1378 aa		29.04	■■■□□ 2.24
TPM1-208	ENST00000404484	ANP32C	O43423	234 aa		29.03	■■■□□ 2.24
TPM1-208	ENST00000404484	HSPA1L	P34931	641 aa		29.02	■■■□□ 2.24
TPM1-208	ENST00000404484	CDCA8	Q53HL2	280 aa		29.02	■■■□□ 2.24
TPM1-208	ENST00000404484	POLR3GL	Q9BT43	218 aa		29.02	■■■□□ 2.24
TPM1-208	ENST00000404484	SLAIN2	Q9P270	581 aa		29.02	■■■□□ 2.24
TPM1-208	ENST00000404484	STK26	Q9P289	416 aa		29.02	■■■□□ 2.24
TPM1-208	ENST00000404484	SBNO2	Q9Y2G9	1366 aa		29.01	■■■□□ 2.23
TPM1-208	ENST00000404484	ATF3	P18847	181 aa		28.99	■■■□□ 2.23
TPM1-208	ENST00000404484	PTCH1	Q13635	1447 aa		28.99	■■■□□ 2.23
TPM1-208	ENST00000404484	DISP3	Q9P2K9	1392 aa		28.98	■■■□□ 2.23
TPM1-208	ENST00000404484	ASXL1	Q8IXJ9	1541 aa		28.98	■■■□□ 2.23
TPM1-208	ENST00000404484	CADPS2	Q86UW7	1296 aa		28.98	■■■□□ 2.23
TPM1-208	ENST00000404484	CENPJ	Q9HC77	1338 aa	Predicted RBP	28.98	■■■□□ 2.23
TPM1-208	ENST00000404484	LRPPRC	P42704	1394 aa	Known RBP	28.98	■■■□□ 2.23
TPM1-208	ENST00000404484	FAM135B	Q49AJ0	1406 aa		28.97	■■■□□ 2.23
TPM1-208	ENST00000404484	TRAK1	Q9UPV9	953 aa		28.96	■■■□□ 2.23
TPM1-208	ENST00000404484	ABCC11	Q96J66	1382 aa		28.96	■■■□□ 2.23
TPM1-208	ENST00000404484	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	28.95	■■■□□ 2.23
TPM1-208	ENST00000404484	YTHDC2	Q9H6S0	1430 aa	Known RBP	28.94	■■■□□ 2.22
TPM1-208	ENST00000404484	ARHGEF28	Q8N1W1	1705 aa	Known RBP	28.94	■■■□□ 2.22
TPM1-208	ENST00000404484	WAPL	Q7Z5K2	1190 aa		28.93	■■■□□ 2.22
TPM1-208	ENST00000404484	QRICH2	Q9H0J4	1663 aa		28.92	■■■□□ 2.22
TPM1-208	ENST00000404484	TECPR2	O15040	1411 aa		28.91	■■■□□ 2.22
TPM1-208	ENST00000404484	ADGRL3	Q9HAR2	1447 aa		28.91	■■■□□ 2.22
TPM1-208	ENST00000404484	DCC	P43146	1447 aa		28.89	■■■□□ 2.22
TPM1-208	ENST00000404484	SIRT1	Q96EB6	747 aa		28.87	■■■□□ 2.21
TPM1-208	ENST00000404484	DLC1	Q96QB1	1528 aa		28.87	■■■□□ 2.21
TPM1-208	ENST00000404484	PLEKHH1	Q9ULM0	1364 aa		28.86	■■■□□ 2.21
TPM1-208	ENST00000404484	CCER2	I3L3R5	266 aa		28.85	■■■□□ 2.21
TPM1-208	ENST00000404484	ROBO1	Q9Y6N7	1651 aa		28.84	■■■□□ 2.21
TPM1-208	ENST00000404484	NALCN	Q8IZF0	1738 aa		28.84	■■■□□ 2.21
TPM1-208	ENST00000404484	MST1R	Q04912	1400 aa		28.82	■■■□□ 2.2
TPM1-208	ENST00000404484	BRINP3	Q76B58	766 aa		28.8	■■■□□ 2.2
TPM1-208	ENST00000404484	PRAM1	Q96QH2	718 aa		28.8	■■■□□ 2.2
TPM1-208	ENST00000404484	KNDC1	Q76NI1	1749 aa		28.8	■■■□□ 2.2
TPM1-208	ENST00000404484	PUS7	Q96PZ0	661 aa	Known RBP	28.79	■■■□□ 2.2
TPM1-208	ENST00000404484	POGK	Q9P215	609 aa		28.78	■■■□□ 2.2
TPM1-208	ENST00000404484	EVC2	Q86UK5	1308 aa		28.78	■■■□□ 2.2
TPM1-208	ENST00000404484	SAFB2	Q14151	953 aa	Known RBP eCLIP	28.77	■■■□□ 2.2
TPM1-208	ENST00000404484	PRKRIP1	Q9H875	184 aa	Predicted RBP	28.76	■■■□□ 2.19
TPM1-208	ENST00000404484	C1orf167	Q5SNV9	1468 aa		28.74	■■■□□ 2.19
TPM1-208	ENST00000404484	MYOM1	P52179	1685 aa		28.73	■■■□□ 2.19
TPM1-208	ENST00000404484	KTN1	Q86UP2	1357 aa	Known RBP	28.73	■■■□□ 2.19
TPM1-208	ENST00000404484	ORAI2	Q96SN7	254 aa		28.72	■■■□□ 2.19
TPM1-208	ENST00000404484	PANK3	Q9H999	370 aa		28.71	■■■□□ 2.19
TPM1-208	ENST00000404484	TULP4	Q9NRJ4	1543 aa		28.7	■■■□□ 2.19
TPM1-208	ENST00000404484	NUTM2F	A1L443	756 aa		28.69	■■■□□ 2.18
TPM1-208	ENST00000404484	DDX17	Q92841	729 aa	Known RBP	28.68	■■■□□ 2.18
TPM1-208	ENST00000404484	CDC42BPG	Q6DT37	1551 aa		28.68	■■■□□ 2.18
TPM1-208	ENST00000404484	PER1	O15534	1290 aa	Predicted RBP	28.67	■■■□□ 2.18
TPM1-208	ENST00000404484	ESCO1	Q5FWF5	840 aa		28.65	■■■□□ 2.18
TPM1-208	ENST00000404484	PHLPP1	O60346	1717 aa		28.65	■■■□□ 2.18
TPM1-208	ENST00000404484	NINL	Q9Y2I6	1382 aa		28.64	■■■□□ 2.17
TPM1-208	ENST00000404484	MINK1	Q8N4C8	1332 aa	Predicted RBP	28.64	■■■□□ 2.17
TPM1-208	ENST00000404484	AHDC1	Q5TGY3	1603 aa	Predicted RBP	28.63	■■■□□ 2.17
TPM1-208	ENST00000404484	RALBP1	Q15311	655 aa		28.63	■■■□□ 2.17
TPM1-208	ENST00000404484	ATAD2	Q6PL18	1390 aa		28.62	■■■□□ 2.17
TPM1-208	ENST00000404484	KNSTRN	Q9Y448	316 aa		28.61	■■■□□ 2.17
TPM1-208	ENST00000404484	COL16A1	Q07092	1604 aa	Predicted RBP	28.6	■■■□□ 2.17
TPM1-208	ENST00000404484	SRPK2	P78362	688 aa	Known RBP	28.58	■■■□□ 2.17
TPM1-208	ENST00000404484	JCAD	Q9P266	1359 aa		28.58	■■■□□ 2.17
TPM1-208	ENST00000404484	NPC1L1	Q9UHC9	1359 aa		28.56	■■■□□ 2.16
TPM1-208	ENST00000404484	TMC1	Q8TDI8	760 aa		28.56	■■■□□ 2.16
TPM1-208	ENST00000404484	PARD3	Q8TEW0	1356 aa		28.55	■■■□□ 2.16
TPM1-208	ENST00000404484	FMN2	Q9NZ56	1722 aa		28.55	■■■□□ 2.16
TPM1-208	ENST00000404484	WASL	O00401	505 aa	Predicted RBP	28.55	■■■□□ 2.16
TPM1-208	ENST00000404484	FOXO3	O43524	673 aa		28.55	■■■□□ 2.16
TPM1-208	ENST00000404484	YTHDC1	Q96MU7	727 aa	Known RBP	28.55	■■■□□ 2.16
TPM1-208	ENST00000404484	CABP2	Q9NPB3	220 aa		28.55	■■■□□ 2.16
TPM1-208	ENST00000404484	NHSL1	Q5SYE7	1610 aa		28.54	■■■□□ 2.16
TPM1-208	ENST00000404484	LRRC59	Q96AG4	307 aa	Known RBP	28.54	■■■□□ 2.16
TPM1-208	ENST00000404484	CDK19	Q9BWU1	502 aa		28.54	■■■□□ 2.16
TPM1-208	ENST00000404484	SOS2	Q07890	1332 aa	Predicted RBP	28.53	■■■□□ 2.16
TPM1-208	ENST00000404484	MYBBP1A	Q9BQG0	1328 aa	Known RBP	28.53	■■■□□ 2.16
TPM1-208	ENST00000404484	ADGRB2	O60241	1585 aa		28.52	■■■□□ 2.16
TPM1-208	ENST00000404484	MED1	Q15648	1581 aa	Predicted RBP	28.52	■■■□□ 2.16
TPM1-208	ENST00000404484	CENPB	P07199	599 aa	Predicted RBP	28.52	■■■□□ 2.16
TPM1-208	ENST00000404484	ANKRD36B	Q8N2N9	1353 aa		28.51	■■■□□ 2.15
TPM1-208	ENST00000404484	CNGB1	Q14028	1251 aa	Predicted RBP	28.5	■■■□□ 2.15
TPM1-208	ENST00000404484	SLC12A5	Q9H2X9	1139 aa		28.5	■■■□□ 2.15
TPM1-208	ENST00000404484	PHF8	Q9UPP1	1060 aa		28.5	■■■□□ 2.15
TPM1-208	ENST00000404484	NPHP3	Q7Z494	1330 aa		28.49	■■■□□ 2.15
TPM1-208	ENST00000404484	XPC	Q01831	940 aa	Predicted RBP	28.49	■■■□□ 2.15
TPM1-208	ENST00000404484	AMER1	Q5JTC6	1135 aa	Predicted RBP	28.49	■■■□□ 2.15
TPM1-208	ENST00000404484	PRR36	Q9H6K5	1346 aa		28.49	■■■□□ 2.15
TPM1-208	ENST00000404484	MRS2	Q9HD23	443 aa		28.49	■■■□□ 2.15
TPM1-208	ENST00000404484	CC2D1B	Q5T0F9	858 aa	Known RBP	28.47	■■■□□ 2.15
TPM1-208	ENST00000404484	RGPD8	O14715	1765 aa	Predicted RBP	28.47	■■■□□ 2.15
TPM1-208	ENST00000404484	ANKAR	Q7Z5J8	1434 aa		28.47	■■■□□ 2.15
TPM1-208	ENST00000404484	BRD4	O60885	1362 aa	Predicted RBP	28.46	■■■□□ 2.15
TPM1-208	ENST00000404484	USP32	Q8NFA0	1604 aa		28.46	■■■□□ 2.15
TPM1-208	ENST00000404484	SPATA31A6	Q5VVP1	1343 aa		28.45	■■■□□ 2.14
TPM1-208	ENST00000404484	PMFBP1	Q8TBY8	1022 aa		28.45	■■■□□ 2.14
TPM1-208	ENST00000404484	TERF2IP	Q9NYB0	399 aa		28.45	■■■□□ 2.14
TPM1-208	ENST00000404484	NSD3	Q9BZ95	1437 aa		28.44	■■■□□ 2.14
TPM1-208	ENST00000404484	CARD14	Q9BXL6	1004 aa		28.44	■■■□□ 2.14

Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms