RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 CENPJQ9HC77 1338 aaPredicted RBP22.53■■□□□ 1.2
HMGA1-204ENST00000401473 C19orf44Q9H6X5 657 aa22.52■■□□□ 1.2
HMGA1-204ENST00000401473 HIRIP3Q9BW71 556 aaPredicted RBP22.51■■□□□ 1.19
HMGA1-204ENST00000401473 MINK1Q8N4C8 1332 aaPredicted RBP22.5■■□□□ 1.19
HMGA1-204ENST00000401473 ADGRL3Q9HAR2 1447 aa22.5■■□□□ 1.19
HMGA1-204ENST00000401473 MSH6P52701 1360 aa22.5■■□□□ 1.19
HMGA1-204ENST00000401473 HSPA5P11021 654 aaKnown RBP22.49■■□□□ 1.19
HMGA1-204ENST00000401473 EIF4G2P78344 907 aaKnown RBP eCLIP22.49■■□□□ 1.19
HMGA1-204ENST00000401473 EIF3AQ14152 1382 aaKnown RBP22.49■■□□□ 1.19
HMGA1-204ENST00000401473 NALCNQ8IZF0 1738 aa22.48■■□□□ 1.19
HMGA1-204ENST00000401473 UBAP1LF5GYI3 381 aa22.48■■□□□ 1.19
HMGA1-204ENST00000401473 TESK2Q96S53 571 aa22.48■■□□□ 1.19
HMGA1-204ENST00000401473 QRICH2Q9H0J4 1663 aa22.45■■□□□ 1.19
HMGA1-204ENST00000401473 TOM1O60784 492 aa22.44■■□□□ 1.18
HMGA1-204ENST00000401473 ATF3P18847 181 aa22.44■■□□□ 1.18
HMGA1-204ENST00000401473 CADPS2Q86UW7 1296 aa22.43■■□□□ 1.18
HMGA1-204ENST00000401473 DCCP43146 1447 aa22.42■■□□□ 1.18
HMGA1-204ENST00000401473 SLAIN2Q9P270 581 aa22.42■■□□□ 1.18
HMGA1-204ENST00000401473 WASLO00401 505 aaPredicted RBP22.41■■□□□ 1.18
HMGA1-204ENST00000401473 SBNO2Q9Y2G9 1366 aa22.41■■□□□ 1.18
HMGA1-204ENST00000401473 NUTM2FA1L443 756 aa22.41■■□□□ 1.18
HMGA1-204ENST00000401473 CDK19Q9BWU1 502 aa22.41■■□□□ 1.18
HMGA1-204ENST00000401473 PIP4K2BP78356 416 aa22.4■■□□□ 1.18
HMGA1-204ENST00000401473 FBXO41Q8TF61 875 aa22.39■■□□□ 1.17
HMGA1-204ENST00000401473 MST1RQ04912 1400 aa22.38■■□□□ 1.17
HMGA1-204ENST00000401473 ADGRB2O60241 1585 aa22.38■■□□□ 1.17
HMGA1-204ENST00000401473 CDC42BPGQ6DT37 1551 aa22.38■■□□□ 1.17
HMGA1-204ENST00000401473 TULP4Q9NRJ4 1543 aa22.37■■□□□ 1.17
HMGA1-204ENST00000401473 CABP2Q9NPB3 220 aa22.37■■□□□ 1.17
HMGA1-204ENST00000401473 EVC2Q86UK5 1308 aa22.36■■□□□ 1.17
HMGA1-204ENST00000401473 C11orf95C9JLR9 678 aaPredicted RBP22.36■■□□□ 1.17
HMGA1-204ENST00000401473 SCAF1Q9H7N4 1312 aaKnown RBP22.35■■□□□ 1.17
HMGA1-204ENST00000401473 DISP3Q9P2K9 1392 aa22.35■■□□□ 1.17
HMGA1-204ENST00000401473 PRR36Q9H6K5 1346 aa22.34■■□□□ 1.17
HMGA1-204ENST00000401473 RGPD8O14715 1765 aaPredicted RBP22.34■■□□□ 1.17
HMGA1-204ENST00000401473 SRPK2P78362 688 aaKnown RBP22.33■■□□□ 1.17
HMGA1-204ENST00000401473 C1orf167Q5SNV9 1468 aa22.33■■□□□ 1.17
HMGA1-204ENST00000401473 SLC24A1O60721 1099 aa22.32■■□□□ 1.16
HMGA1-204ENST00000401473 TMF1P82094 1093 aa22.32■■□□□ 1.16
HMGA1-204ENST00000401473 ORAI2Q96SN7 254 aa22.32■■□□□ 1.16
HMGA1-204ENST00000401473 FMN2Q9NZ56 1722 aa22.32■■□□□ 1.16
HMGA1-204ENST00000401473 BRINP3Q76B58 766 aa22.31■■□□□ 1.16
HMGA1-204ENST00000401473 NUDT16Q96DE0 195 aaKnown RBP22.31■■□□□ 1.16
HMGA1-204ENST00000401473 USP32Q8NFA0 1604 aa22.3■■□□□ 1.16
HMGA1-204ENST00000401473 ESCO1Q5FWF5 840 aa22.28■■□□□ 1.16
HMGA1-204ENST00000401473 ROBO1Q9Y6N7 1651 aa22.27■■□□□ 1.16
HMGA1-204ENST00000401473 ATP7BP35670 1465 aa22.27■■□□□ 1.16
HMGA1-204ENST00000401473 ILDR1Q86SU0 546 aaPredicted RBP22.27■■□□□ 1.16
HMGA1-204ENST00000401473 CCDC61Q9Y6R9 512 aa22.27■■□□□ 1.16
HMGA1-204ENST00000401473 PUS7Q96PZ0 661 aaKnown RBP22.26■■□□□ 1.15
HMGA1-204ENST00000401473 ANKARQ7Z5J8 1434 aa22.25■■□□□ 1.15
HMGA1-204ENST00000401473 DDX17Q92841 729 aaKnown RBP22.25■■□□□ 1.15
HMGA1-204ENST00000401473 PMFBP1Q8TBY8 1022 aa22.24■■□□□ 1.15
HMGA1-204ENST00000401473 CABP1Q9NZU7 370 aa22.24■■□□□ 1.15
HMGA1-204ENST00000401473 HSPA1LP34931 641 aa22.22■■□□□ 1.15
HMGA1-204ENST00000401473 SLC12A5Q9H2X9 1139 aa22.22■■□□□ 1.15
HMGA1-204ENST00000401473 CDCA8Q53HL2 280 aa22.22■■□□□ 1.15
HMGA1-204ENST00000401473 KIF7Q2M1P5 1343 aa22.21■■□□□ 1.15
HMGA1-204ENST00000401473 POLR3GLQ9BT43 218 aa22.21■■□□□ 1.15
HMGA1-204ENST00000401473 PHF8Q9UPP1 1060 aa22.21■■□□□ 1.15
HMGA1-204ENST00000401473 WASHC2AQ641Q2 1341 aa22.21■■□□□ 1.15
HMGA1-204ENST00000401473 ATAD2Q6PL18 1390 aa22.21■■□□□ 1.15
HMGA1-204ENST00000401473 PLEKHG3A1L390 1219 aa22.2■■□□□ 1.14
HMGA1-204ENST00000401473 FOXO3O43524 673 aa22.2■■□□□ 1.14
HMGA1-204ENST00000401473 PPIP5K1Q6PFW1 1433 aa22.2■■□□□ 1.14
HMGA1-204ENST00000401473 TMC1Q8TDI8 760 aa22.19■■□□□ 1.14
HMGA1-204ENST00000401473 TOPAZ1Q8N9V7 1692 aa22.18■■□□□ 1.14
HMGA1-204ENST00000401473 ACEP12821 1306 aa22.17■■□□□ 1.14
HMGA1-204ENST00000401473 CCDC7Q96M83 1385 aa22.16■■□□□ 1.14
HMGA1-204ENST00000401473 ITSN1Q15811 1721 aa22.16■■□□□ 1.14
HMGA1-204ENST00000401473 XPCQ01831 940 aaPredicted RBP22.15■■□□□ 1.14
HMGA1-204ENST00000401473 NGDNQ8NEJ9 315 aaKnown RBP22.14■■□□□ 1.13
HMGA1-204ENST00000401473 AHDC1Q5TGY3 1603 aaPredicted RBP22.14■■□□□ 1.13
HMGA1-204ENST00000401473 POLR3AO14802 1390 aaPredicted RBP22.13■■□□□ 1.13
HMGA1-204ENST00000401473 CD163L1Q9NR16 1453 aa22.13■■□□□ 1.13
HMGA1-204ENST00000401473 SOS2Q07890 1332 aaPredicted RBP22.12■■□□□ 1.13
HMGA1-204ENST00000401473 NHSL1Q5SYE7 1610 aa22.12■■□□□ 1.13
HMGA1-204ENST00000401473 NPHP3Q7Z494 1330 aa22.12■■□□□ 1.13
HMGA1-204ENST00000401473 PSME1Q06323 249 aa22.11■■□□□ 1.13
HMGA1-204ENST00000401473 MYOM1P52179 1685 aa22.11■■□□□ 1.13
HMGA1-204ENST00000401473 ZNF316A6NFI3 1004 aaPredicted RBP22.11■■□□□ 1.13
HMGA1-204ENST00000401473 CPSF1Q10570 1443 aaKnown RBP22.1■■□□□ 1.13
HMGA1-204ENST00000401473 KIF1AQ12756 1690 aa22.1■■□□□ 1.13
HMGA1-204ENST00000401473 PXDNQ92626 1479 aa22.1■■□□□ 1.13
HMGA1-204ENST00000401473 PHLPP1O60346 1717 aa22.09■■□□□ 1.13
HMGA1-204ENST00000401473 COL16A1Q07092 1604 aaPredicted RBP22.09■■□□□ 1.13
HMGA1-204ENST00000401473 KRT28Q7Z3Y7 464 aa22.09■■□□□ 1.13
HMGA1-204ENST00000401473 NINLQ9Y2I6 1382 aa22.09■■□□□ 1.13
HMGA1-204ENST00000401473 ZNF692Q9BU19 519 aaPredicted RBP22.08■■□□□ 1.13
HMGA1-204ENST00000401473 A0A1W2PP64 1363 aa22.08■■□□□ 1.12
HMGA1-204ENST00000401473 CARD14Q9BXL6 1004 aa22.07■■□□□ 1.12
HMGA1-204ENST00000401473 PANK3Q9H999 370 aa22.07■■□□□ 1.12
HMGA1-204ENST00000401473 TERF2IPQ9NYB0 399 aa22.07■■□□□ 1.12
HMGA1-204ENST00000401473 ANKRD36BQ8N2N9 1353 aa22.05■■□□□ 1.12
HMGA1-204ENST00000401473 AKAP12Q02952 1782 aa22.05■■□□□ 1.12
HMGA1-204ENST00000401473 HDGFL2Q7Z4V5 671 aaPredicted RBP22.05■■□□□ 1.12
HMGA1-204ENST00000401473 LRRC59Q96AG4 307 aaKnown RBP22.05■■□□□ 1.12
HMGA1-204ENST00000401473 KTN1Q86UP2 1357 aaKnown RBP22.04■■□□□ 1.12
HMGA1-204ENST00000401473 USP6P35125 1406 aa22.04■■□□□ 1.12
HMGA1-204ENST00000401473 SSH2Q76I76 1423 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 141 ms