RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 CPLX2Q6PUV4 134 aaKnown RBP22.21■■□□□ 1.15
COL18A1-204ENST00000400337 RIC3Q7Z5B4 369 aa22.21■■□□□ 1.15
COL18A1-204ENST00000400337 CHMP5Q9NZZ3 219 aa22.2■■□□□ 1.14
COL18A1-204ENST00000400337 MSH5O43196 834 aa22.2■■□□□ 1.14
COL18A1-204ENST00000400337 C22orf23Q9BZE7 217 aa22.2■■□□□ 1.14
COL18A1-204ENST00000400337 ABTB2Q8N961 1025 aa22.19■■□□□ 1.14
COL18A1-204ENST00000400337 EXOSC9Q06265 439 aaKnown RBP22.18■■□□□ 1.14
COL18A1-204ENST00000400337 RNF20Q5VTR2 975 aa22.18■■□□□ 1.14
COL18A1-204ENST00000400337 UBTFL1P0CB47 393 aaPredicted RBP22.18■■□□□ 1.14
COL18A1-204ENST00000400337 BECN2A8MW95 431 aa22.17■■□□□ 1.14
COL18A1-204ENST00000400337 GOLGA6L19H0YKK7 550 aa22.17■■□□□ 1.14
COL18A1-204ENST00000400337 SNAPC4Q5SXM2 1469 aa22.17■■□□□ 1.14
COL18A1-204ENST00000400337 TIAM1Q13009 1591 aa22.17■■□□□ 1.14
COL18A1-204ENST00000400337 CPLX1O14810 134 aa22.16■■□□□ 1.14
COL18A1-204ENST00000400337 ERC2O15083 957 aa22.16■■□□□ 1.14
COL18A1-204ENST00000400337 NOC3LQ8WTT2 800 aaKnown RBP22.16■■□□□ 1.14
COL18A1-204ENST00000400337 PES1O00541 588 aaKnown RBP22.16■■□□□ 1.14
COL18A1-204ENST00000400337 PLEKHH2Q8IVE3 1493 aa22.15■■□□□ 1.14
COL18A1-204ENST00000400337 VPS37DQ86XT2 251 aa22.15■■□□□ 1.14
COL18A1-204ENST00000400337 DAPK1P53355 1430 aa22.15■■□□□ 1.14
COL18A1-204ENST00000400337 ESCO1Q5FWF5 840 aa22.14■■□□□ 1.14
COL18A1-204ENST00000400337 TPD52L1Q16890 204 aaPredicted RBP22.14■■□□□ 1.13
COL18A1-204ENST00000400337 GAS2L2Q8NHY3 880 aa22.14■■□□□ 1.13
COL18A1-204ENST00000400337 NEUROD6Q96NK8 337 aa22.14■■□□□ 1.13
COL18A1-204ENST00000400337 CABP1Q9NZU7 370 aa22.14■■□□□ 1.13
COL18A1-204ENST00000400337 CC2D2AQ9P2K1 1620 aa22.14■■□□□ 1.13
COL18A1-204ENST00000400337 TRDNQ13061 729 aa22.14■■□□□ 1.13
COL18A1-204ENST00000400337 CDK19Q9BWU1 502 aa22.13■■□□□ 1.13
COL18A1-204ENST00000400337 NOL10Q9BSC4 688 aaKnown RBP22.13■■□□□ 1.13
COL18A1-204ENST00000400337 TRIM29Q14134 588 aa22.13■■□□□ 1.13
COL18A1-204ENST00000400337 HMGXB3Q12766 1538 aa22.13■■□□□ 1.13
COL18A1-204ENST00000400337 GPRASP1Q5JY77 1395 aa22.13■■□□□ 1.13
COL18A1-204ENST00000400337 TSR2Q969E8 191 aaKnown RBP22.13■■□□□ 1.13
COL18A1-204ENST00000400337 HECW1Q76N89 1606 aa22.12■■□□□ 1.13
COL18A1-204ENST00000400337 VPS37CA5D8V6 355 aaPredicted RBP22.12■■□□□ 1.13
COL18A1-204ENST00000400337 CDC45O75419 566 aa22.12■■□□□ 1.13
COL18A1-204ENST00000400337 TWISTNBQ3B726 338 aaPredicted RBP22.12■■□□□ 1.13
COL18A1-204ENST00000400337 TPM3P06753 285 aa22.11■■□□□ 1.13
COL18A1-204ENST00000400337 CCDC30Q5VVM6 783 aa22.11■■□□□ 1.13
COL18A1-204ENST00000400337 AMOTL1Q8IY63 956 aa22.11■■□□□ 1.13
COL18A1-204ENST00000400337 PNISRQ8TF01 805 aaKnown RBP22.11■■□□□ 1.13
COL18A1-204ENST00000400337 RAPGEF3O95398 923 aa22.11■■□□□ 1.13
COL18A1-204ENST00000400337 SMC3Q9UQE7 1217 aa22.11■■□□□ 1.13
COL18A1-204ENST00000400337 SLC52A1Q9NWF4 448 aa22.1■■□□□ 1.13
COL18A1-204ENST00000400337 BCAR3O75815 825 aa22.1■■□□□ 1.13
COL18A1-204ENST00000400337 RAD21O60216 631 aa22.09■■□□□ 1.13
COL18A1-204ENST00000400337 GNAI3P08754 354 aa22.09■■□□□ 1.13
COL18A1-204ENST00000400337 BICD2Q8TD16 824 aa22.09■■□□□ 1.13
COL18A1-204ENST00000400337 NUCB2P80303 420 aa22.08■■□□□ 1.13
COL18A1-204ENST00000400337 C1orf115Q9H7X2 142 aa22.08■■□□□ 1.12
COL18A1-204ENST00000400337 SURF6O75683 361 aaKnown RBP22.08■■□□□ 1.12
COL18A1-204ENST00000400337 SULT6B1Q6IMI4 303 aa22.08■■□□□ 1.12
COL18A1-204ENST00000400337 ERBINQ96RT1 1412 aa22.08■■□□□ 1.12
COL18A1-204ENST00000400337 NFXL1Q6ZNB6 911 aa22.07■■□□□ 1.12
COL18A1-204ENST00000400337 PDZRN3Q9UPQ7 1066 aa22.07■■□□□ 1.12
COL18A1-204ENST00000400337 NOB1Q9ULX3 412 aaKnown RBP22.07■■□□□ 1.12
COL18A1-204ENST00000400337 PDE4CQ08493 712 aa22.06■■□□□ 1.12
COL18A1-204ENST00000400337 PDE3AQ14432 1141 aa22.06■■□□□ 1.12
COL18A1-204ENST00000400337 PLEKHO1Q53GL0 409 aaPredicted RBP22.06■■□□□ 1.12
COL18A1-204ENST00000400337 PROSER2Q86WR7 435 aaPredicted RBP22.06■■□□□ 1.12
COL18A1-204ENST00000400337 CDK13Q14004 1512 aaKnown RBP22.06■■□□□ 1.12
COL18A1-204ENST00000400337 CCDC184Q52MB2 194 aa22.06■■□□□ 1.12
COL18A1-204ENST00000400337 AKNAQ7Z591 1439 aa22.06■■□□□ 1.12
COL18A1-204ENST00000400337 WASHC4Q2M389 1173 aa22.05■■□□□ 1.12
COL18A1-204ENST00000400337 CLASRPQ8N2M8 674 aaKnown RBP22.05■■□□□ 1.12
COL18A1-204ENST00000400337 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.05■■□□□ 1.12
COL18A1-204ENST00000400337 DNMBPQ6XZF7 1577 aa22.04■■□□□ 1.12
COL18A1-204ENST00000400337 FOSBP53539 338 aa22.04■■□□□ 1.12
COL18A1-204ENST00000400337 MEX3CQ5U5Q3 659 aaKnown RBP22.04■■□□□ 1.12
COL18A1-204ENST00000400337 ZNF692Q9BU19 519 aaPredicted RBP22.04■■□□□ 1.12
COL18A1-204ENST00000400337 TSR1Q2NL82 804 aaKnown RBP22.03■■□□□ 1.12
COL18A1-204ENST00000400337 THEMISQ8N1K5 641 aaPredicted RBP22.03■■□□□ 1.12
COL18A1-204ENST00000400337 EPRSP07814 1512 aaKnown RBP22.03■■□□□ 1.12
COL18A1-204ENST00000400337 DHX16O60231 1041 aaKnown RBP22.03■■□□□ 1.12
COL18A1-204ENST00000400337 TRIM34Q9BYJ4 488 aa22.03■■□□□ 1.12
COL18A1-204ENST00000400337 SUPT6HQ7KZ85 1726 aaKnown RBP22.03■■□□□ 1.12
COL18A1-204ENST00000400337 NAIPQ13075 1403 aa22.03■■□□□ 1.12
COL18A1-204ENST00000400337 ERICH2A1L162 156 aa22.02■■□□□ 1.12
COL18A1-204ENST00000400337 SLC4A2P04920 1241 aa22.02■■□□□ 1.12
COL18A1-204ENST00000400337 FBXW7Q969H0 707 aa22.02■■□□□ 1.12
COL18A1-204ENST00000400337 CNTROBQ8N137 903 aa22.02■■□□□ 1.12
COL18A1-204ENST00000400337 RALYLQ86SE5 291 aaKnown RBP22.02■■□□□ 1.12
COL18A1-204ENST00000400337 FSD1Q9BTV5 496 aa22.02■■□□□ 1.12
COL18A1-204ENST00000400337 WDR97A6NE52 1622 aa22.01■■□□□ 1.11
COL18A1-204ENST00000400337 NFKBIBQ15653 356 aa22.01■■□□□ 1.11
COL18A1-204ENST00000400337 SLC26A8Q96RN1 970 aa22■■□□□ 1.11
COL18A1-204ENST00000400337 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22■■□□□ 1.119e-7■■■■□ 19.6
COL18A1-204ENST00000400337 NINLQ9Y2I6 1382 aa22■■□□□ 1.11
COL18A1-204ENST00000400337 RTEL1-TNFRSF6BF6WH68 1400 aa22■■□□□ 1.11
COL18A1-204ENST00000400337 KIAA0586Q9BVV6 1533 aa22■■□□□ 1.11
COL18A1-204ENST00000400337 TPM1P09493 284 aa21.99■■□□□ 1.11
COL18A1-204ENST00000400337 HDGFL1Q5TGJ6 251 aa21.99■■□□□ 1.11
COL18A1-204ENST00000400337 WDR63Q8IWG1 891 aa21.99■■□□□ 1.11
COL18A1-204ENST00000400337 RPGRIP1LQ68CZ1 1315 aa21.98■■□□□ 1.11
COL18A1-204ENST00000400337 GOLGA6L1Q8N7Z2 621 aa21.98■■□□□ 1.11
COL18A1-204ENST00000400337 GNAI2P04899 355 aa21.98■■□□□ 1.11
COL18A1-204ENST00000400337 CEP89Q96ST8 783 aa21.98■■□□□ 1.11
COL18A1-204ENST00000400337 ANKRD30BQ9BXX2 1392 aa21.98■■□□□ 1.11
COL18A1-204ENST00000400337 GCC1Q96CN9 775 aa21.98■■□□□ 1.11
COL18A1-204ENST00000400337 RBM33Q96EV2 1170 aaKnown RBP21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms