RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 STK26Q9P289 416 aa19.83■□□□□ 0.77
SKA1-202ENST00000398452 TBX22Q9Y458 520 aa19.82■□□□□ 0.76
SKA1-202ENST00000398452 YTHDC2Q9H6S0 1430 aaKnown RBP19.8■□□□□ 0.76
SKA1-202ENST00000398452 RBM33Q96EV2 1170 aaKnown RBP19.8■□□□□ 0.76
SKA1-202ENST00000398452 ADGRB1O14514 1584 aa19.79■□□□□ 0.76
SKA1-202ENST00000398452 DIP2AQ14689 1571 aa19.79■□□□□ 0.76
SKA1-202ENST00000398452 POGKQ9P215 609 aa19.79■□□□□ 0.76
SKA1-202ENST00000398452 CENPJQ9HC77 1338 aaPredicted RBP19.78■□□□□ 0.76
SKA1-202ENST00000398452 LRPPRCP42704 1394 aaKnown RBP19.78■□□□□ 0.76
SKA1-202ENST00000398452 ADAMTS13Q76LX8 1427 aa19.77■□□□□ 0.76
SKA1-202ENST00000398452 TMF1P82094 1093 aa19.77■□□□□ 0.76
SKA1-202ENST00000398452 ABCB7O75027 752 aa19.76■□□□□ 0.75
SKA1-202ENST00000398452 CDCA8Q53HL2 280 aa19.76■□□□□ 0.75
SKA1-202ENST00000398452 NRXN3Q9Y4C0 1643 aa19.76■□□□□ 0.75
SKA1-202ENST00000398452 METP08581 1390 aa19.75■□□□□ 0.75
SKA1-202ENST00000398452 POLR3GLQ9BT43 218 aa19.75■□□□□ 0.75
SKA1-202ENST00000398452 ABCC11Q96J66 1382 aa19.74■□□□□ 0.75
SKA1-202ENST00000398452 PIK3R4Q99570 1358 aa19.74■□□□□ 0.75
SKA1-202ENST00000398452 PROSER2Q86WR7 435 aaPredicted RBP19.74■□□□□ 0.75
SKA1-202ENST00000398452 ASXL1Q8IXJ9 1541 aa19.72■□□□□ 0.75
SKA1-202ENST00000398452 SOCS7O14512 581 aa19.72■□□□□ 0.75
SKA1-202ENST00000398452 KCNA6P17658 529 aa19.72■□□□□ 0.75
SKA1-202ENST00000398452 PRAM1Q96QH2 718 aa19.72■□□□□ 0.75
SKA1-202ENST00000398452 AMOTL2Q9Y2J4 779 aa19.72■□□□□ 0.75
SKA1-202ENST00000398452 TMEM94Q12767 1356 aa19.7■□□□□ 0.74
SKA1-202ENST00000398452 SAFB2Q14151 953 aaKnown RBP eCLIP19.7■□□□□ 0.74
SKA1-202ENST00000398452 SIRT1Q96EB6 747 aa19.7■□□□□ 0.74
SKA1-202ENST00000398452 DLC1Q96QB1 1528 aa19.7■□□□□ 0.74
SKA1-202ENST00000398452 SETD1AO15047 1707 aaKnown RBP19.69■□□□□ 0.74
SKA1-202ENST00000398452 TESK2Q96S53 571 aa19.68■□□□□ 0.74
SKA1-202ENST00000398452 SBNO2Q9Y2G9 1366 aa19.68■□□□□ 0.74
SKA1-202ENST00000398452 XIRP1Q702N8 1843 aaKnown RBP19.67■□□□□ 0.74
SKA1-202ENST00000398452 EVC2Q86UK5 1308 aa19.67■□□□□ 0.74
SKA1-202ENST00000398452 CCDC7Q96M83 1385 aa19.67■□□□□ 0.74
SKA1-202ENST00000398452 TECPR2O15040 1411 aa19.67■□□□□ 0.74
SKA1-202ENST00000398452 FAM135BQ49AJ0 1406 aa19.67■□□□□ 0.74
SKA1-202ENST00000398452 MED1Q15648 1581 aaPredicted RBP19.66■□□□□ 0.74
SKA1-202ENST00000398452 ARHGEF28Q8N1W1 1705 aaKnown RBP19.65■□□□□ 0.74
SKA1-202ENST00000398452 KIF7Q2M1P5 1343 aa19.65■□□□□ 0.74
SKA1-202ENST00000398452 WASHC2AQ641Q2 1341 aa19.65■□□□□ 0.74
SKA1-202ENST00000398452 WAPLQ7Z5K2 1190 aa19.64■□□□□ 0.73
SKA1-202ENST00000398452 MINK1Q8N4C8 1332 aaPredicted RBP19.64■□□□□ 0.73
SKA1-202ENST00000398452 KNDC1Q76NI1 1749 aa19.64■□□□□ 0.73
SKA1-202ENST00000398452 DDX10Q13206 875 aaKnown RBP19.63■□□□□ 0.73
SKA1-202ENST00000398452 QRICH2Q9H0J4 1663 aa19.62■□□□□ 0.73
SKA1-202ENST00000398452 PTCH1Q13635 1447 aa19.62■□□□□ 0.73
SKA1-202ENST00000398452 PTPRUQ92729 1446 aa19.62■□□□□ 0.73
SKA1-202ENST00000398452 DIEXFQ68CQ4 756 aaKnown RBP19.62■□□□□ 0.73
SKA1-202ENST00000398452 C11orf95C9JLR9 678 aaPredicted RBP19.61■□□□□ 0.73
SKA1-202ENST00000398452 SRPK2P78362 688 aaKnown RBP19.61■□□□□ 0.73
SKA1-202ENST00000398452 C14orf37Q86TY3 774 aa19.61■□□□□ 0.73
SKA1-202ENST00000398452 FOXD4L1Q9NU39 408 aa19.61■□□□□ 0.73
SKA1-202ENST00000398452 ROBO2Q9HCK4 1378 aa19.6■□□□□ 0.73
SKA1-202ENST00000398452 MSH6P52701 1360 aa19.57■□□□□ 0.72
SKA1-202ENST00000398452 PLEKHH1Q9ULM0 1364 aa19.57■□□□□ 0.72
SKA1-202ENST00000398452 PUS7Q96PZ0 661 aaKnown RBP19.57■□□□□ 0.72
SKA1-202ENST00000398452 XRN1Q8IZH2 1706 aaKnown RBP19.56■□□□□ 0.72
SKA1-202ENST00000398452 CHD2O14647 1828 aaKnown RBP19.55■□□□□ 0.72
SKA1-202ENST00000398452 NKTRP30414 1462 aaKnown RBP19.55■□□□□ 0.72
SKA1-202ENST00000398452 NWD1Q149M9 1564 aa19.55■□□□□ 0.72
SKA1-202ENST00000398452 CDK19Q9BWU1 502 aa19.55■□□□□ 0.72
SKA1-202ENST00000398452 WASLO00401 505 aaPredicted RBP19.54■□□□□ 0.72
SKA1-202ENST00000398452 TMC1Q8TDI8 760 aa19.54■□□□□ 0.72
SKA1-202ENST00000398452 SLAIN2Q9P270 581 aa19.54■□□□□ 0.72
SKA1-202ENST00000398452 ATAD2Q6PL18 1390 aa19.54■□□□□ 0.72
SKA1-202ENST00000398452 CABP2Q9NPB3 220 aa19.53■□□□□ 0.72
SKA1-202ENST00000398452 ROBO1Q9Y6N7 1651 aa19.52■□□□□ 0.71
SKA1-202ENST00000398452 TULP4Q9NRJ4 1543 aa19.5■□□□□ 0.71
SKA1-202ENST00000398452 NINLQ9Y2I6 1382 aa19.49■□□□□ 0.71
SKA1-202ENST00000398452 ANP32CO43423 234 aa19.47■□□□□ 0.71
SKA1-202ENST00000398452 ATF3P18847 181 aa19.47■□□□□ 0.71
SKA1-202ENST00000398452 POLA2Q14181 598 aa19.46■□□□□ 0.71
SKA1-202ENST00000398452 TERF2IPQ9NYB0 399 aa19.46■□□□□ 0.71
SKA1-202ENST00000398452 ADGRB2O60241 1585 aa19.45■□□□□ 0.7
SKA1-202ENST00000398452 ADGRL3Q9HAR2 1447 aa19.45■□□□□ 0.7
SKA1-202ENST00000398452 NCOA3Q9Y6Q9 1424 aa19.45■□□□□ 0.7
SKA1-202ENST00000398452 HDGFL2Q7Z4V5 671 aaPredicted RBP19.45■□□□□ 0.7
SKA1-202ENST00000398452 NUDT16Q96DE0 195 aaKnown RBP19.45■□□□□ 0.7
SKA1-202ENST00000398452 PANK3Q9H999 370 aa19.45■□□□□ 0.7
SKA1-202ENST00000398452 RGS17Q9UGC6 210 aaPredicted RBP19.45■□□□□ 0.7
SKA1-202ENST00000398452 CCDC61Q9Y6R9 512 aa19.45■□□□□ 0.7
SKA1-202ENST00000398452 C19orf44Q9H6X5 657 aa19.44■□□□□ 0.7
SKA1-202ENST00000398452 KNSTRNQ9Y448 316 aa19.44■□□□□ 0.7
SKA1-202ENST00000398452 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.43■□□□□ 0.7
SKA1-202ENST00000398452 CADPS2Q86UW7 1296 aa19.43■□□□□ 0.7
SKA1-202ENST00000398452 NUTM2FA1L443 756 aa19.42■□□□□ 0.7
SKA1-202ENST00000398452 SLC12A5Q9H2X9 1139 aa19.42■□□□□ 0.7
SKA1-202ENST00000398452 PHLPP1O60346 1717 aa19.42■□□□□ 0.7
SKA1-202ENST00000398452 CABP1Q9NZU7 370 aa19.4■□□□□ 0.7
SKA1-202ENST00000398452 PPIP5K1Q6PFW1 1433 aa19.39■□□□□ 0.69
SKA1-202ENST00000398452 ANKARQ7Z5J8 1434 aa19.39■□□□□ 0.69
SKA1-202ENST00000398452 CDC42BPGQ6DT37 1551 aa19.39■□□□□ 0.69
SKA1-202ENST00000398452 ANKRD36BQ8N2N9 1353 aa19.38■□□□□ 0.69
SKA1-202ENST00000398452 POTEAQ6S8J7 498 aa19.37■□□□□ 0.69
SKA1-202ENST00000398452 JCADQ9P266 1359 aa19.36■□□□□ 0.69
SKA1-202ENST00000398452 CNGB1Q14028 1251 aaPredicted RBP19.36■□□□□ 0.69
SKA1-202ENST00000398452 ZNF692Q9BU19 519 aaPredicted RBP19.36■□□□□ 0.69
SKA1-202ENST00000398452 NALCNQ8IZF0 1738 aa19.36■□□□□ 0.69
SKA1-202ENST00000398452 ATP7BP35670 1465 aa19.35■□□□□ 0.69
SKA1-202ENST00000398452 BRINP3Q76B58 766 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms