RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 DLC1Q96QB1 1528 aa19.2■□□□□ 0.66
VPS28-202ENST00000377348 KIAA1210Q9ULL0 1709 aa19.2■□□□□ 0.66
VPS28-202ENST00000377348 MST1RQ04912 1400 aa19.2■□□□□ 0.66
VPS28-202ENST00000377348 NBPF8Q3BBV2 869 aa19.2■□□□□ 0.66
VPS28-202ENST00000377348 CCER1Q8TC90 406 aaPredicted RBP19.2■□□□□ 0.66
VPS28-202ENST00000377348 POGKQ9P215 609 aa19.19■□□□□ 0.66
VPS28-202ENST00000377348 TRPM1Q7Z4N2 1603 aa19.16■□□□□ 0.66
VPS28-202ENST00000377348 CLSPNQ9HAW4 1339 aa19.16■□□□□ 0.66
VPS28-202ENST00000377348 CDC42BPGQ6DT37 1551 aa19.15■□□□□ 0.66
VPS28-202ENST00000377348 NUTM2FA1L443 756 aa19.15■□□□□ 0.66
VPS28-202ENST00000377348 BRINP3Q76B58 766 aa19.15■□□□□ 0.66
VPS28-202ENST00000377348 HIRIP3Q9BW71 556 aaPredicted RBP19.14■□□□□ 0.65
VPS28-202ENST00000377348 C1orf167Q5SNV9 1468 aa19.14■□□□□ 0.65
VPS28-202ENST00000377348 ARHGEF28Q8N1W1 1705 aaKnown RBP19.14■□□□□ 0.65
VPS28-202ENST00000377348 MINK1Q8N4C8 1332 aaPredicted RBP19.13■□□□□ 0.65
VPS28-202ENST00000377348 ROCK2O75116 1388 aaKnown RBP19.13■□□□□ 0.65
VPS28-202ENST00000377348 ORAI2Q96SN7 254 aa19.12■□□□□ 0.65
VPS28-202ENST00000377348 DDX17Q92841 729 aaKnown RBP19.1■□□□□ 0.65
VPS28-202ENST00000377348 FMN2Q9NZ56 1722 aa19.08■□□□□ 0.65
VPS28-202ENST00000377348 ESCO1Q5FWF5 840 aa19.08■□□□□ 0.64
VPS28-202ENST00000377348 PHLPP1O60346 1717 aa19.08■□□□□ 0.64
VPS28-202ENST00000377348 ADGRB2O60241 1585 aa19.07■□□□□ 0.64
VPS28-202ENST00000377348 RALGAPBQ86X10 1494 aa19.07■□□□□ 0.64
VPS28-202ENST00000377348 AHDC1Q5TGY3 1603 aaPredicted RBP19.07■□□□□ 0.64
VPS28-202ENST00000377348 GPRASP1Q5JY77 1395 aa19.06■□□□□ 0.64
VPS28-202ENST00000377348 CENPJQ9HC77 1338 aaPredicted RBP19.05■□□□□ 0.64
VPS28-202ENST00000377348 COL16A1Q07092 1604 aaPredicted RBP19.05■□□□□ 0.64
VPS28-202ENST00000377348 CARD11Q9BXL7 1154 aa19.05■□□□□ 0.64
VPS28-202ENST00000377348 WASLO00401 505 aaPredicted RBP19.04■□□□□ 0.64
VPS28-202ENST00000377348 NHSL1Q5SYE7 1610 aa19.03■□□□□ 0.64
VPS28-202ENST00000377348 TIMELESSQ9UNS1 1208 aa19.03■□□□□ 0.64
VPS28-202ENST00000377348 PRR36Q9H6K5 1346 aa19.01■□□□□ 0.63
VPS28-202ENST00000377348 USP32Q8NFA0 1604 aa19.01■□□□□ 0.63
VPS28-202ENST00000377348 RGPD8O14715 1765 aaPredicted RBP19.01■□□□□ 0.63
VPS28-202ENST00000377348 FOXO3O43524 673 aa19■□□□□ 0.63
VPS28-202ENST00000377348 CDK19Q9BWU1 502 aa19■□□□□ 0.63
VPS28-202ENST00000377348 QRICH2Q9H0J4 1663 aa19■□□□□ 0.63
VPS28-202ENST00000377348 TULP4Q9NRJ4 1543 aa19■□□□□ 0.63
VPS28-202ENST00000377348 ANKARQ7Z5J8 1434 aa19■□□□□ 0.63
VPS28-202ENST00000377348 EIF3AQ14152 1382 aaKnown RBP18.99■□□□□ 0.63
VPS28-202ENST00000377348 XPCQ01831 940 aaPredicted RBP18.99■□□□□ 0.63
VPS28-202ENST00000377348 PHF8Q9UPP1 1060 aa18.98■□□□□ 0.63
VPS28-202ENST00000377348 JCADQ9P266 1359 aa18.97■□□□□ 0.63
VPS28-202ENST00000377348 PMFBP1Q8TBY8 1022 aa18.97■□□□□ 0.63
VPS28-202ENST00000377348 SOS2Q07890 1332 aaPredicted RBP18.97■□□□□ 0.63
VPS28-202ENST00000377348 NPHP3Q7Z494 1330 aa18.97■□□□□ 0.63
VPS28-202ENST00000377348 NUDT16Q96DE0 195 aaKnown RBP18.96■□□□□ 0.63
VPS28-202ENST00000377348 ATP7BP35670 1465 aa18.96■□□□□ 0.63
VPS28-202ENST00000377348 CABP2Q9NPB3 220 aa18.95■□□□□ 0.62
VPS28-202ENST00000377348 KIF1AQ12756 1690 aa18.95■□□□□ 0.62
VPS28-202ENST00000377348 SRPK2P78362 688 aaKnown RBP18.94■□□□□ 0.62
VPS28-202ENST00000377348 LRRC59Q96AG4 307 aaKnown RBP18.94■□□□□ 0.62
VPS28-202ENST00000377348 PXDNQ92626 1479 aa18.94■□□□□ 0.62
VPS28-202ENST00000377348 MED1Q15648 1581 aaPredicted RBP18.93■□□□□ 0.62
VPS28-202ENST00000377348 KRT28Q7Z3Y7 464 aa18.91■□□□□ 0.62
VPS28-202ENST00000377348 SHPRHQ149N8 1683 aa18.91■□□□□ 0.62
VPS28-202ENST00000377348 PNPLA6Q8IY17 1366 aa18.91■□□□□ 0.62
VPS28-202ENST00000377348 ST20-MTHFSA0A0A6YYL1 179 aa18.9■□□□□ 0.62
VPS28-202ENST00000377348 EVC2Q86UK5 1308 aa18.9■□□□□ 0.62
VPS28-202ENST00000377348 CCDC61Q9Y6R9 512 aa18.89■□□□□ 0.61
VPS28-202ENST00000377348 USP47Q96K76 1375 aa18.89■□□□□ 0.61
VPS28-202ENST00000377348 DISP3Q9P2K9 1392 aa18.89■□□□□ 0.61
VPS28-202ENST00000377348 NUTM2BA6NNL0 878 aaPredicted RBP18.88■□□□□ 0.61
VPS28-202ENST00000377348 NUTM2EB1AL46 878 aaPredicted RBP18.88■□□□□ 0.61
VPS28-202ENST00000377348 PSME1Q06323 249 aa18.88■□□□□ 0.61
VPS28-202ENST00000377348 NUTM2AQ8IVF1 878 aaPredicted RBP18.88■□□□□ 0.61
VPS28-202ENST00000377348 NGDNQ8NEJ9 315 aaKnown RBP18.88■□□□□ 0.61
VPS28-202ENST00000377348 SBNO2Q9Y2G9 1366 aa18.88■□□□□ 0.61
VPS28-202ENST00000377348 LRP6O75581 1613 aa18.88■□□□□ 0.61
VPS28-202ENST00000377348 TOPAZ1Q8N9V7 1692 aa18.88■□□□□ 0.61
VPS28-202ENST00000377348 ITSN1Q15811 1721 aa18.87■□□□□ 0.61
VPS28-202ENST00000377348 SPATA31A6Q5VVP1 1343 aa18.87■□□□□ 0.61
VPS28-202ENST00000377348 PPIP5K1Q6PFW1 1433 aa18.86■□□□□ 0.61
VPS28-202ENST00000377348 TESK2Q96S53 571 aa18.86■□□□□ 0.61
VPS28-202ENST00000377348 ACEP12821 1306 aa18.85■□□□□ 0.61
VPS28-202ENST00000377348 SPATA31A3Q5VYP0 1347 aa18.85■□□□□ 0.61
VPS28-202ENST00000377348 PLEKHG3A1L390 1219 aa18.84■□□□□ 0.61
VPS28-202ENST00000377348 CABP1Q9NZU7 370 aa18.84■□□□□ 0.61
VPS28-202ENST00000377348 TNS3Q68CZ2 1445 aa18.83■□□□□ 0.61
VPS28-202ENST00000377348 LMOD2Q6P5Q4 547 aa18.83■□□□□ 0.6
VPS28-202ENST00000377348 SBNO1A3KN83 1393 aa18.82■□□□□ 0.6
VPS28-202ENST00000377348 POLR3AO14802 1390 aaPredicted RBP18.82■□□□□ 0.6
VPS28-202ENST00000377348 PHF23Q9BUL5 403 aaPredicted RBP18.82■□□□□ 0.6
VPS28-202ENST00000377348 TRPM3Q9HCF6 1732 aaPredicted RBP18.81■□□□□ 0.6
VPS28-202ENST00000377348 PLEKHG5O94827 1062 aa18.81■□□□□ 0.6
VPS28-202ENST00000377348 MEX3CQ5U5Q3 659 aaKnown RBP18.81■□□□□ 0.6
VPS28-202ENST00000377348 COL22A1Q8NFW1 1626 aaPredicted RBP18.81■□□□□ 0.6
VPS28-202ENST00000377348 PAK3O75914 559 aaPredicted RBP18.8■□□□□ 0.6
VPS28-202ENST00000377348 ATAD2Q6PL18 1390 aa18.8■□□□□ 0.6
VPS28-202ENST00000377348 ADAMTS2O95450 1211 aa18.79■□□□□ 0.6
VPS28-202ENST00000377348 CABLES1Q8TDN4 633 aa18.78■□□□□ 0.6
VPS28-202ENST00000377348 RGS17Q9UGC6 210 aaPredicted RBP18.77■□□□□ 0.6
VPS28-202ENST00000377348 ARHGEF10O15013 1369 aa18.76■□□□□ 0.59
VPS28-202ENST00000377348 ALS2Q96Q42 1657 aa18.76■□□□□ 0.59
VPS28-202ENST00000377348 HSPA5P11021 654 aaKnown RBP18.75■□□□□ 0.59
VPS28-202ENST00000377348 TMF1P82094 1093 aa18.75■□□□□ 0.59
VPS28-202ENST00000377348 TMC1Q8TDI8 760 aa18.75■□□□□ 0.59
VPS28-202ENST00000377348 EIF4G2P78344 907 aaKnown RBP eCLIP18.74■□□□□ 0.59
VPS28-202ENST00000377348 NUTM2GQ5VZR2 741 aa18.74■□□□□ 0.59
VPS28-202ENST00000377348 C8orf37Q96NL8 207 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms