RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 L3MBTL2Q969R5 705 aa17.66■□□□□ 0.42
VRK3-202ENST00000377011 LAMC1P11047 1609 aa17.65■□□□□ 0.42
VRK3-202ENST00000377011 BRINP3Q76B58 766 aa17.65■□□□□ 0.42
VRK3-202ENST00000377011 DCCP43146 1447 aa17.64■□□□□ 0.41
VRK3-202ENST00000377011 SAFB2Q14151 953 aaKnown RBP eCLIP17.64■□□□□ 0.41
VRK3-202ENST00000377011 NBPF1Q3BBV0 1214 aa17.64■□□□□ 0.41
VRK3-202ENST00000377011 PHLPP1O60346 1717 aa17.62■□□□□ 0.41
VRK3-202ENST00000377011 NUTM2FA1L443 756 aa17.62■□□□□ 0.41
VRK3-202ENST00000377011 TRAK1Q9UPV9 953 aa17.62■□□□□ 0.41
VRK3-202ENST00000377011 C1orf167Q5SNV9 1468 aa17.61■□□□□ 0.41
VRK3-202ENST00000377011 ORAI2Q96SN7 254 aa17.61■□□□□ 0.41
VRK3-202ENST00000377011 COL16A1Q07092 1604 aaPredicted RBP17.61■□□□□ 0.41
VRK3-202ENST00000377011 PRAM1Q96QH2 718 aa17.61■□□□□ 0.41
VRK3-202ENST00000377011 MED1Q15648 1581 aaPredicted RBP17.59■□□□□ 0.41
VRK3-202ENST00000377011 CDC42BPGQ6DT37 1551 aa17.58■□□□□ 0.4
VRK3-202ENST00000377011 AHDC1Q5TGY3 1603 aaPredicted RBP17.58■□□□□ 0.4
VRK3-202ENST00000377011 RGPD8O14715 1765 aaPredicted RBP17.57■□□□□ 0.4
VRK3-202ENST00000377011 NHSL1Q5SYE7 1610 aa17.57■□□□□ 0.4
VRK3-202ENST00000377011 DISP3Q9P2K9 1392 aa17.57■□□□□ 0.4
VRK3-202ENST00000377011 ARHGEF28Q8N1W1 1705 aaKnown RBP17.56■□□□□ 0.4
VRK3-202ENST00000377011 DLC1Q96QB1 1528 aa17.56■□□□□ 0.4
VRK3-202ENST00000377011 NBPF8Q3BBV2 869 aa17.56■□□□□ 0.4
VRK3-202ENST00000377011 HIRIP3Q9BW71 556 aaPredicted RBP17.56■□□□□ 0.4
VRK3-202ENST00000377011 SIRT1Q96EB6 747 aa17.55■□□□□ 0.4
VRK3-202ENST00000377011 FMN2Q9NZ56 1722 aa17.55■□□□□ 0.4
VRK3-202ENST00000377011 GTF3C3Q9Y5Q9 886 aa17.55■□□□□ 0.4
VRK3-202ENST00000377011 KIAA1210Q9ULL0 1709 aa17.54■□□□□ 0.4
VRK3-202ENST00000377011 ILDR2Q71H61 639 aa17.53■□□□□ 0.4
VRK3-202ENST00000377011 STAC3Q96MF2 364 aa17.53■□□□□ 0.4
VRK3-202ENST00000377011 MINK1Q8N4C8 1332 aaPredicted RBP17.53■□□□□ 0.4
VRK3-202ENST00000377011 USP32Q8NFA0 1604 aa17.53■□□□□ 0.4
VRK3-202ENST00000377011 MIER1Q8N108 512 aa17.52■□□□□ 0.4
VRK3-202ENST00000377011 TRPM1Q7Z4N2 1603 aa17.52■□□□□ 0.4
VRK3-202ENST00000377011 POGKQ9P215 609 aa17.52■□□□□ 0.39
VRK3-202ENST00000377011 XPCQ01831 940 aaPredicted RBP17.51■□□□□ 0.39
VRK3-202ENST00000377011 ESCO1Q5FWF5 840 aa17.5■□□□□ 0.39
VRK3-202ENST00000377011 LRP6O75581 1613 aa17.5■□□□□ 0.39
VRK3-202ENST00000377011 PRR36Q9H6K5 1346 aa17.49■□□□□ 0.39
VRK3-202ENST00000377011 ADGRB2O60241 1585 aa17.48■□□□□ 0.39
VRK3-202ENST00000377011 RGS17Q9UGC6 210 aaPredicted RBP17.48■□□□□ 0.39
VRK3-202ENST00000377011 FOXO3O43524 673 aa17.47■□□□□ 0.39
VRK3-202ENST00000377011 JCADQ9P266 1359 aa17.47■□□□□ 0.39
VRK3-202ENST00000377011 SHPRHQ149N8 1683 aa17.46■□□□□ 0.39
VRK3-202ENST00000377011 SOS2Q07890 1332 aaPredicted RBP17.45■□□□□ 0.38
VRK3-202ENST00000377011 PXDNQ92626 1479 aa17.45■□□□□ 0.38
VRK3-202ENST00000377011 TIMELESSQ9UNS1 1208 aa17.44■□□□□ 0.38
VRK3-202ENST00000377011 TONSLQ96HA7 1378 aa17.44■□□□□ 0.38
VRK3-202ENST00000377011 PNPLA6Q8IY17 1366 aa17.43■□□□□ 0.38
VRK3-202ENST00000377011 WASLO00401 505 aaPredicted RBP17.43■□□□□ 0.38
VRK3-202ENST00000377011 PMFBP1Q8TBY8 1022 aa17.43■□□□□ 0.38
VRK3-202ENST00000377011 NUTM2BA6NNL0 878 aaPredicted RBP17.41■□□□□ 0.38
VRK3-202ENST00000377011 NUTM2EB1AL46 878 aaPredicted RBP17.41■□□□□ 0.38
VRK3-202ENST00000377011 NUTM2AQ8IVF1 878 aaPredicted RBP17.41■□□□□ 0.38
VRK3-202ENST00000377011 ROCK2O75116 1388 aaKnown RBP17.41■□□□□ 0.38
VRK3-202ENST00000377011 QRICH2Q9H0J4 1663 aa17.4■□□□□ 0.38
VRK3-202ENST00000377011 LRRC59Q96AG4 307 aaKnown RBP17.4■□□□□ 0.38
VRK3-202ENST00000377011 PHF8Q9UPP1 1060 aa17.4■□□□□ 0.38
VRK3-202ENST00000377011 TULP4Q9NRJ4 1543 aa17.4■□□□□ 0.38
VRK3-202ENST00000377011 CDK19Q9BWU1 502 aa17.39■□□□□ 0.37
VRK3-202ENST00000377011 ATP7BP35670 1465 aa17.39■□□□□ 0.37
VRK3-202ENST00000377011 GPRASP1Q5JY77 1395 aa17.38■□□□□ 0.37
VRK3-202ENST00000377011 KIF1AQ12756 1690 aa17.38■□□□□ 0.37
VRK3-202ENST00000377011 NPHP3Q7Z494 1330 aa17.38■□□□□ 0.37
VRK3-202ENST00000377011 CENPJQ9HC77 1338 aaPredicted RBP17.38■□□□□ 0.37
VRK3-202ENST00000377011 ANKARQ7Z5J8 1434 aa17.37■□□□□ 0.37
VRK3-202ENST00000377011 RALGAPBQ86X10 1494 aa17.37■□□□□ 0.37
VRK3-202ENST00000377011 POTEAQ6S8J7 498 aa17.36■□□□□ 0.37
VRK3-202ENST00000377011 KRT28Q7Z3Y7 464 aa17.36■□□□□ 0.37
VRK3-202ENST00000377011 SPATA31A6Q5VVP1 1343 aa17.36■□□□□ 0.37
VRK3-202ENST00000377011 NUDT16Q96DE0 195 aaKnown RBP17.35■□□□□ 0.37
VRK3-202ENST00000377011 CABP2Q9NPB3 220 aa17.35■□□□□ 0.37
VRK3-202ENST00000377011 TOPAZ1Q8N9V7 1692 aa17.35■□□□□ 0.37
VRK3-202ENST00000377011 PLEKHG5O94827 1062 aa17.34■□□□□ 0.37
VRK3-202ENST00000377011 MYT1Q01538 1121 aa17.34■□□□□ 0.37
VRK3-202ENST00000377011 TRPM3Q9HCF6 1732 aaPredicted RBP17.33■□□□□ 0.37
VRK3-202ENST00000377011 COL22A1Q8NFW1 1626 aaPredicted RBP17.33■□□□□ 0.37
VRK3-202ENST00000377011 YTHDC1Q96MU7 727 aaKnown RBP17.33■□□□□ 0.37
VRK3-202ENST00000377011 CARD11Q9BXL7 1154 aa17.33■□□□□ 0.37
VRK3-202ENST00000377011 SPATA31A3Q5VYP0 1347 aa17.33■□□□□ 0.36
VRK3-202ENST00000377011 ADAMTS2O95450 1211 aa17.33■□□□□ 0.36
VRK3-202ENST00000377011 CABLES1Q8TDN4 633 aa17.31■□□□□ 0.36
VRK3-202ENST00000377011 PSME1Q06323 249 aa17.3■□□□□ 0.36
VRK3-202ENST00000377011 MEX3CQ5U5Q3 659 aaKnown RBP17.3■□□□□ 0.36
VRK3-202ENST00000377011 ITSN1Q15811 1721 aa17.29■□□□□ 0.36
VRK3-202ENST00000377011 SRPK2P78362 688 aaKnown RBP17.29■□□□□ 0.36
VRK3-202ENST00000377011 C8orf37Q96NL8 207 aa17.28■□□□□ 0.36
VRK3-202ENST00000377011 TNS3Q68CZ2 1445 aa17.28■□□□□ 0.36
VRK3-202ENST00000377011 ALS2Q96Q42 1657 aa17.28■□□□□ 0.36
VRK3-202ENST00000377011 ACEP12821 1306 aa17.27■□□□□ 0.36
VRK3-202ENST00000377011 NGDNQ8NEJ9 315 aaKnown RBP17.27■□□□□ 0.35
VRK3-202ENST00000377011 CCDC61Q9Y6R9 512 aa17.27■□□□□ 0.35
VRK3-202ENST00000377011 EIF3AQ14152 1382 aaKnown RBP17.26■□□□□ 0.35
VRK3-202ENST00000377011 ABCA3Q99758 1704 aa17.26■□□□□ 0.35
VRK3-202ENST00000377011 AFF2P51816 1311 aa17.26■□□□□ 0.35
VRK3-202ENST00000377011 PPIP5K1Q6PFW1 1433 aa17.26■□□□□ 0.35
VRK3-202ENST00000377011 LMOD2Q6P5Q4 547 aa17.26■□□□□ 0.35
VRK3-202ENST00000377011 SBNO1A3KN83 1393 aa17.26■□□□□ 0.35
VRK3-202ENST00000377011 POLR3AO14802 1390 aaPredicted RBP17.24■□□□□ 0.35
VRK3-202ENST00000377011 PLEKHG3A1L390 1219 aa17.24■□□□□ 0.35
VRK3-202ENST00000377011 CABP1Q9NZU7 370 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms