RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 MORC1Q86VD1 984 aa32.89■■■□□ 2.86
C9orf40-201ENST00000376854 LAS1LQ9Y4W2 734 aaKnown RBP32.89■■■□□ 2.86
C9orf40-201ENST00000376854 SLC12A5Q9H2X9 1139 aa32.86■■■□□ 2.85
C9orf40-201ENST00000376854 FAM161AQ3B820 660 aa32.85■■■□□ 2.85
C9orf40-201ENST00000376854 WWC1Q8IX03 1113 aa32.85■■■□□ 2.85
C9orf40-201ENST00000376854 RPGRIP1LQ68CZ1 1315 aa32.83■■■□□ 2.85
C9orf40-201ENST00000376854 QRICH2Q9H0J4 1663 aa32.83■■■□□ 2.85
C9orf40-201ENST00000376854 YEATS2Q9ULM3 1422 aa32.83■■■□□ 2.85
C9orf40-201ENST00000376854 TNNT2P45379 298 aaPredicted RBP32.82■■■□□ 2.84
C9orf40-201ENST00000376854 ZC3H13Q5T200 1668 aaKnown RBP32.82■■■□□ 2.84
C9orf40-201ENST00000376854 RICTORQ6R327 1708 aa32.82■■■□□ 2.84
C9orf40-201ENST00000376854 C8orf34Q49A92 452 aa32.81■■■□□ 2.84
C9orf40-201ENST00000376854 PIK3C2BO00750 1634 aa32.8■■■□□ 2.84
C9orf40-201ENST00000376854 PPM1GO15355 546 aaPredicted RBP32.79■■■□□ 2.84
C9orf40-201ENST00000376854 NEFMP07197 916 aa32.79■■■□□ 2.84
C9orf40-201ENST00000376854 RGS3P49796 1198 aa32.78■■■□□ 2.84
C9orf40-201ENST00000376854 PDE3AQ14432 1141 aa32.77■■■□□ 2.84
C9orf40-201ENST00000376854 USP35Q9P2H5 1018 aa32.77■■■□□ 2.84
C9orf40-201ENST00000376854 RUNDC1Q96C34 613 aa32.77■■■□□ 2.84
C9orf40-201ENST00000376854 SHPRHQ149N8 1683 aa32.76■■■□□ 2.84
C9orf40-201ENST00000376854 SENP3Q9H4L4 574 aaPredicted RBP32.76■■■□□ 2.83
C9orf40-201ENST00000376854 CGNL1Q0VF96 1302 aa32.76■■■□□ 2.83
C9orf40-201ENST00000376854 NEXMIFQ5QGS0 1516 aa32.76■■■□□ 2.83
C9orf40-201ENST00000376854 IDI1Q13907 227 aa32.75■■■□□ 2.83
C9orf40-201ENST00000376854 NINLQ9Y2I6 1382 aa32.75■■■□□ 2.83
C9orf40-201ENST00000376854 NEUROD2Q15784 382 aa32.74■■■□□ 2.83
C9orf40-201ENST00000376854 GLI2P10070 1586 aa32.74■■■□□ 2.83
C9orf40-201ENST00000376854 CYB5RLQ6IPT4 315 aa32.73■■■□□ 2.83
C9orf40-201ENST00000376854 CANXP27824 592 aaKnown RBP32.73■■■□□ 2.83
C9orf40-201ENST00000376854 RRP7AQ9Y3A4 280 aaKnown RBP32.72■■■□□ 2.83
C9orf40-201ENST00000376854 TCP11L2Q8N4U5 519 aa32.71■■■□□ 2.83
C9orf40-201ENST00000376854 VGFO15240 615 aaPredicted RBP32.71■■■□□ 2.83
C9orf40-201ENST00000376854 ARHGAP31Q2M1Z3 1444 aa32.7■■■□□ 2.83
C9orf40-201ENST00000376854 USP32Q8NFA0 1604 aa32.7■■■□□ 2.83
C9orf40-201ENST00000376854 IGHDP01880 384 aa32.7■■■□□ 2.83
C9orf40-201ENST00000376854 MTHFSP49914 203 aa32.7■■■□□ 2.83
C9orf40-201ENST00000376854 IQSEC2Q5JU85 1478 aa32.69■■■□□ 2.82
C9orf40-201ENST00000376854 PANK1Q8TE04 598 aa32.68■■■□□ 2.82
C9orf40-201ENST00000376854 CFAP53Q96M91 514 aa32.68■■■□□ 2.82
C9orf40-201ENST00000376854 EVC2Q86UK5 1308 aa32.67■■■□□ 2.82
C9orf40-201ENST00000376854 CLUAP1Q96AJ1 413 aa32.67■■■□□ 2.82
C9orf40-201ENST00000376854 PHF23Q9BUL5 403 aaPredicted RBP32.67■■■□□ 2.82
C9orf40-201ENST00000376854 COG6Q9Y2V7 657 aa32.67■■■□□ 2.82
C9orf40-201ENST00000376854 PUS7Q96PZ0 661 aaKnown RBP32.66■■■□□ 2.82
C9orf40-201ENST00000376854 DAXXQ9UER7 740 aaPredicted RBP32.66■■■□□ 2.82
C9orf40-201ENST00000376854 ARHGEF28Q8N1W1 1705 aaKnown RBP32.65■■■□□ 2.82
C9orf40-201ENST00000376854 WDR63Q8IWG1 891 aa32.65■■■□□ 2.82
C9orf40-201ENST00000376854 FRAT1Q92837 279 aaPredicted RBP32.65■■■□□ 2.82
C9orf40-201ENST00000376854 SLC4A3P48751 1232 aa32.64■■■□□ 2.82
C9orf40-201ENST00000376854 TULP4Q9NRJ4 1543 aa32.64■■■□□ 2.82
C9orf40-201ENST00000376854 RARSP54136 660 aaKnown RBP32.63■■■□□ 2.81
C9orf40-201ENST00000376854 SAFB2Q14151 953 aaKnown RBP eCLIP32.63■■■□□ 2.81
C9orf40-201ENST00000376854 ANKRD36BQ8N2N9 1353 aa32.63■■■□□ 2.81
C9orf40-201ENST00000376854 NSD2O96028 1365 aa32.6■■■□□ 2.81
C9orf40-201ENST00000376854 MYO5BQ9ULV0 1848 aa32.6■■■□□ 2.81
C9orf40-201ENST00000376854 CCDC27Q2M243 656 aa32.6■■■□□ 2.81
C9orf40-201ENST00000376854 CABP2Q9NPB3 220 aa32.6■■■□□ 2.81
C9orf40-201ENST00000376854 SLC52A1Q9NWF4 448 aa32.6■■■□□ 2.81
C9orf40-201ENST00000376854 STK26Q9P289 416 aa32.6■■■□□ 2.81
C9orf40-201ENST00000376854 FBXO31Q5XUX0 539 aaPredicted RBP32.57■■■□□ 2.81
C9orf40-201ENST00000376854 PREX1Q8TCU6 1659 aa32.57■■■□□ 2.8
C9orf40-201ENST00000376854 FAM69CQ0P6D2 419 aa32.56■■■□□ 2.8
C9orf40-201ENST00000376854 MAPK8IP3Q9UPT6 1336 aa32.54■■■□□ 2.8
C9orf40-201ENST00000376854 TMEM131LA2VDJ0 1609 aa32.54■■■□□ 2.8
C9orf40-201ENST00000376854 U2AF1L5P0DN76 240 aaPredicted RBP32.54■■■□□ 2.8
C9orf40-201ENST00000376854 U2AF1Q01081 240 aaKnown RBP eCLIP32.54■■■□□ 2.8
C9orf40-201ENST00000376854 ZFYVE9O95405 1425 aa32.53■■■□□ 2.8
C9orf40-201ENST00000376854 AAMPQ13685 434 aa32.52■■■□□ 2.8
C9orf40-201ENST00000376854 NCBP3Q53F19 620 aaKnown RBP32.51■■■□□ 2.8
C9orf40-201ENST00000376854 MYH16Q9H6N6 1097 aa32.51■■■□□ 2.8
C9orf40-201ENST00000376854 BCL2L13Q9BXK5 485 aa32.5■■■□□ 2.79
C9orf40-201ENST00000376854 RLBP1P12271 317 aa32.49■■■□□ 2.79
C9orf40-201ENST00000376854 NFKBIBQ15653 356 aa32.49■■■□□ 2.79
C9orf40-201ENST00000376854 PMFBP1Q8TBY8 1022 aa32.49■■■□□ 2.79
C9orf40-201ENST00000376854 TNNQ9UQP3 1299 aa32.48■■■□□ 2.79
C9orf40-201ENST00000376854 A0A1W2PP64 1363 aa32.45■■■□□ 2.79
C9orf40-201ENST00000376854 PCDHB15Q9Y5E8 787 aa32.45■■■□□ 2.78
C9orf40-201ENST00000376854 DIP2BQ9P265 1576 aa32.45■■■□□ 2.78
C9orf40-201ENST00000376854 RIMBP3CA6NJZ7 1639 aa32.44■■■□□ 2.78
C9orf40-201ENST00000376854 RIMBP3BA6NNM3 1639 aa32.44■■■□□ 2.78
C9orf40-201ENST00000376854 TSPOAP1O95153 1857 aa32.44■■■□□ 2.78
C9orf40-201ENST00000376854 SRPK2P78362 688 aaKnown RBP32.44■■■□□ 2.78
C9orf40-201ENST00000376854 ABCC11Q96J66 1382 aa32.44■■■□□ 2.78
C9orf40-201ENST00000376854 RIMBP3Q9UFD9 1639 aa32.44■■■□□ 2.78
C9orf40-201ENST00000376854 PTPRMP28827 1452 aa32.43■■■□□ 2.78
C9orf40-201ENST00000376854 MINK1Q8N4C8 1332 aaPredicted RBP32.43■■■□□ 2.78
C9orf40-201ENST00000376854 PRAM1Q96QH2 718 aa32.42■■■□□ 2.78
C9orf40-201ENST00000376854 ADGRB2O60241 1585 aa32.42■■■□□ 2.78
C9orf40-201ENST00000376854 USP19O94966 1318 aa32.42■■■□□ 2.78
C9orf40-201ENST00000376854 VIRMAQ69YN4 1812 aaKnown RBP32.42■■■□□ 2.78
C9orf40-201ENST00000376854 GGNBP2Q9H3C7 697 aa32.39■■■□□ 2.78
C9orf40-201ENST00000376854 YTHDC2Q9H6S0 1430 aaKnown RBP32.39■■■□□ 2.78
C9orf40-201ENST00000376854 U2SURPO15042 1029 aaKnown RBP32.38■■■□□ 2.77
C9orf40-201ENST00000376854 SEC24BO95487 1268 aa32.38■■■□□ 2.77
C9orf40-201ENST00000376854 POGKQ9P215 609 aa32.36■■■□□ 2.77
C9orf40-201ENST00000376854 PLEKHF1Q96S99 279 aa32.35■■■□□ 2.77
C9orf40-201ENST00000376854 RWDD1Q9H446 243 aaPredicted RBP32.35■■■□□ 2.77
C9orf40-201ENST00000376854 ATAD2Q6PL18 1390 aa32.35■■■□□ 2.77
C9orf40-201ENST00000376854 CT47B1P0C2W7 299 aaPredicted RBP32.35■■■□□ 2.77
C9orf40-201ENST00000376854 STAG3Q9UJ98 1225 aa32.35■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms