RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 CCDC181Q5TID7 509 aa11.13□□□□□ -0.63
VPS13A-203ENST00000360280 NGEFQ8N5V2 710 aa11.13□□□□□ -0.63
VPS13A-203ENST00000360280 NUP155O75694 1391 aa11.13□□□□□ -0.63
VPS13A-203ENST00000360280 ANKRD62A6NC57 917 aa11.13□□□□□ -0.63
VPS13A-203ENST00000360280 PRDM2Q13029 1718 aa11.13□□□□□ -0.63
VPS13A-203ENST00000360280 GIMAP7Q8NHV1 300 aa11.13□□□□□ -0.63
VPS13A-203ENST00000360280 SLC4A3P48751 1232 aa11.12□□□□□ -0.63
VPS13A-203ENST00000360280 C1orf141Q5JVX7 400 aa11.12□□□□□ -0.63
VPS13A-203ENST00000360280 FBXW7Q969H0 707 aa11.12□□□□□ -0.63
VPS13A-203ENST00000360280 RAB3GAP2Q9H2M9 1393 aa11.12□□□□□ -0.63
VPS13A-203ENST00000360280 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.12□□□□□ -0.63
VPS13A-203ENST00000360280 SKIDA1Q1XH10 827 aa11.12□□□□□ -0.63
VPS13A-203ENST00000360280 RRP9O43818 475 aaKnown RBP11.12□□□□□ -0.63
VPS13A-203ENST00000360280 TSPY26PQ9H489 355 aa11.12□□□□□ -0.63
VPS13A-203ENST00000360280 SMC2O95347 1197 aa11.12□□□□□ -0.63
VPS13A-203ENST00000360280 SLC26A8Q96RN1 970 aa11.12□□□□□ -0.63
VPS13A-203ENST00000360280 MEX3CQ5U5Q3 659 aaKnown RBP11.11□□□□□ -0.63
VPS13A-203ENST00000360280 CCAR1Q8IX12 1150 aaKnown RBP11.11□□□□□ -0.63
VPS13A-203ENST00000360280 LRRCC1Q9C099 1032 aa11.11□□□□□ -0.63
VPS13A-203ENST00000360280 KAT6BQ8WYB5 2073 aa11.11□□□□□ -0.63
VPS13A-203ENST00000360280 WWC2Q6AWC2 1192 aa11.11□□□□□ -0.63
VPS13A-203ENST00000360280 DDX11Q96FC9 970 aa11.11□□□□□ -0.63
VPS13A-203ENST00000360280 CCDC9Q9Y3X0 531 aaKnown RBP11.11□□□□□ -0.63
VPS13A-203ENST00000360280 DDX58O95786 925 aaKnown RBP11.11□□□□□ -0.63
VPS13A-203ENST00000360280 TTC5Q8N0Z6 440 aa11.1□□□□□ -0.63
VPS13A-203ENST00000360280 PAF1Q8N7H5 531 aa11.1□□□□□ -0.63
VPS13A-203ENST00000360280 CDK5RAP3Q96JB5 506 aa11.1□□□□□ -0.63
VPS13A-203ENST00000360280 HSP90AB4PQ58FF6 505 aa11.1□□□□□ -0.63
VPS13A-203ENST00000360280 CWC22Q9HCG8 908 aaKnown RBP11.1□□□□□ -0.63
VPS13A-203ENST00000360280 NACADO15069 1562 aa11.1□□□□□ -0.63
VPS13A-203ENST00000360280 NGDNQ8NEJ9 315 aaKnown RBP11.1□□□□□ -0.63
VPS13A-203ENST00000360280 CARMIL2Q6F5E8 1435 aa11.09□□□□□ -0.63
VPS13A-203ENST00000360280 MCM2P49736 904 aa11.09□□□□□ -0.63
VPS13A-203ENST00000360280 C22orf23Q9BZE7 217 aa11.09□□□□□ -0.63
VPS13A-203ENST00000360280 CCDC144AA2RUR9 1427 aa11.09□□□□□ -0.63
VPS13A-203ENST00000360280 JMYQ8N9B5 988 aa11.09□□□□□ -0.63
VPS13A-203ENST00000360280 DACH1Q9UI36 760 aa11.09□□□□□ -0.63
VPS13A-203ENST00000360280 CCDC91Q7Z6B0 441 aa11.08□□□□□ -0.64
VPS13A-203ENST00000360280 STIM1Q13586 685 aa11.08□□□□□ -0.64
VPS13A-203ENST00000360280 SART3Q15020 963 aaKnown RBP11.08□□□□□ -0.64
VPS13A-203ENST00000360280 NFKBIBQ15653 356 aa11.08□□□□□ -0.64
VPS13A-203ENST00000360280 TEFQ10587 303 aa11.08□□□□□ -0.64
VPS13A-203ENST00000360280 CCDC112Q8NEF3 446 aa11.08□□□□□ -0.64
VPS13A-203ENST00000360280 RBM33Q96EV2 1170 aaKnown RBP11.08□□□□□ -0.64
VPS13A-203ENST00000360280 TAX1BP1Q86VP1 789 aa11.08□□□□□ -0.64
VPS13A-203ENST00000360280 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.08□□□□□ -0.64
VPS13A-203ENST00000360280 CCDC192P0DO97 292 aa11.08□□□□□ -0.64
VPS13A-203ENST00000360280 BCL11BQ9C0K0 894 aaPredicted RBP11.08□□□□□ -0.64
VPS13A-203ENST00000360280 CENPHQ9H3R5 247 aa11.07□□□□□ -0.64
VPS13A-203ENST00000360280 SPATA24Q86W54 205 aa11.07□□□□□ -0.64
VPS13A-203ENST00000360280 PDCL2Q8N4E4 241 aa11.07□□□□□ -0.64
VPS13A-203ENST00000360280 ZNF396Q96N95 335 aaPredicted RBP11.07□□□□□ -0.64
VPS13A-203ENST00000360280 SHTN1A0MZ66 631 aa11.07□□□□□ -0.64
VPS13A-203ENST00000360280 DESP17661 470 aa11.07□□□□□ -0.64
VPS13A-203ENST00000360280 CRBNQ96SW2 442 aa11.07□□□□□ -0.64
VPS13A-203ENST00000360280 G3BP1Q13283 466 aaKnown RBP eCLIP11.07□□□□□ -0.64
VPS13A-203ENST00000360280 FEZ1Q99689 392 aa11.07□□□□□ -0.64
VPS13A-203ENST00000360280 KIF3BO15066 747 aa11.07□□□□□ -0.64
VPS13A-203ENST00000360280 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.06□□□□□ -0.642e-6■■■□□ 14.9
VPS13A-203ENST00000360280 PPM1EQ8WY54 764 aa11.06□□□□□ -0.64
VPS13A-203ENST00000360280 TRAK2O60296 914 aa11.06□□□□□ -0.64
VPS13A-203ENST00000360280 DZIP1LQ8IYY4 767 aaKnown RBP11.06□□□□□ -0.64
VPS13A-203ENST00000360280 MLECQ14165 292 aa11.06□□□□□ -0.64
VPS13A-203ENST00000360280 STAMBPO95630 424 aa11.06□□□□□ -0.64
VPS13A-203ENST00000360280 FAM107BQ9H098 131 aa11.05□□□□□ -0.64
VPS13A-203ENST00000360280 MPHOSPH9Q99550 1183 aa11.05□□□□□ -0.64
VPS13A-203ENST00000360280 MCM3P25205 808 aa11.05□□□□□ -0.64
VPS13A-203ENST00000360280 NF2P35240 595 aa11.05□□□□□ -0.64
VPS13A-203ENST00000360280 EID1Q9Y6B2 187 aa11.05□□□□□ -0.64
VPS13A-203ENST00000360280 CBFA2T2O43439 604 aa11.05□□□□□ -0.64
VPS13A-203ENST00000360280 SERPINC1P01008 464 aa11.05□□□□□ -0.64
VPS13A-203ENST00000360280 PPFIBP1Q86W92 1011 aa11.05□□□□□ -0.64
VPS13A-203ENST00000360280 API5Q9BZZ5 524 aaKnown RBP11.05□□□□□ -0.64
VPS13A-203ENST00000360280 COG6Q9Y2V7 657 aa11.04□□□□□ -0.64
VPS13A-203ENST00000360280 CUX2O14529 1486 aa11.04□□□□□ -0.64
VPS13A-203ENST00000360280 BCL2L13Q9BXK5 485 aa11.04□□□□□ -0.64
VPS13A-203ENST00000360280 GBP3Q9H0R5 595 aa11.04□□□□□ -0.64
VPS13A-203ENST00000360280 UQCRHLA0A096LP55 91 aa11.04□□□□□ -0.64
VPS13A-203ENST00000360280 UQCRHP07919 91 aa11.04□□□□□ -0.64
VPS13A-203ENST00000360280 BRPF1P55201 1214 aaPredicted RBP11.04□□□□□ -0.64
VPS13A-203ENST00000360280 CDC45O75419 566 aa11.04□□□□□ -0.64
VPS13A-203ENST00000360280 HIP1O00291 1037 aa11.04□□□□□ -0.64
VPS13A-203ENST00000360280 MAP9Q49MG5 647 aa11.04□□□□□ -0.64
VPS13A-203ENST00000360280 CNTROBQ8N137 903 aa11.04□□□□□ -0.64
VPS13A-203ENST00000360280 GOLGA6L10A0A0M3HER8 536 aa11.04□□□□□ -0.64
VPS13A-203ENST00000360280 RNF214Q8ND24 703 aa11.04□□□□□ -0.64
VPS13A-203ENST00000360280 KRT18P05783 430 aaKnown RBP11.04□□□□□ -0.64
VPS13A-203ENST00000360280 CCDC102AQ96A19 550 aa11.03□□□□□ -0.64
VPS13A-203ENST00000360280 SPC24Q8NBT2 197 aa11.03□□□□□ -0.64
VPS13A-203ENST00000360280 RRP7AQ9Y3A4 280 aaKnown RBP11.03□□□□□ -0.64
VPS13A-203ENST00000360280 GGT6Q6P531 493 aa11.03□□□□□ -0.64
VPS13A-203ENST00000360280 SLC3A2P08195 630 aaKnown RBP11.03□□□□□ -0.64
VPS13A-203ENST00000360280 FOSBP53539 338 aa11.03□□□□□ -0.64
VPS13A-203ENST00000360280 RBM10P98175 930 aaKnown RBP11.03□□□□□ -0.64
VPS13A-203ENST00000360280 TMEM132AQ24JP5 1023 aa11.03□□□□□ -0.64
VPS13A-203ENST00000360280 COG3Q96JB2 828 aa11.02□□□□□ -0.64
VPS13A-203ENST00000360280 EVC2Q86UK5 1308 aa11.02□□□□□ -0.64
VPS13A-203ENST00000360280 EXOC6Q8TAG9 804 aa11.02□□□□□ -0.64
VPS13A-203ENST00000360280 FMNL2Q96PY5 1086 aa11.02□□□□□ -0.64
VPS13A-203ENST00000360280 KIF2AO00139 706 aaPredicted RBP11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms