RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 KTN1Q86UP2 1357 aaKnown RBP12.32□□□□□ -0.44
UPF2-202ENST00000357604 NCOA3Q9Y6Q9 1424 aa12.32□□□□□ -0.44
UPF2-202ENST00000357604 NEURL4Q96JN8 1562 aa12.31□□□□□ -0.44
UPF2-202ENST00000357604 SLIT1O75093 1534 aa12.31□□□□□ -0.44
UPF2-202ENST00000357604 AMPHP49418 695 aa12.31□□□□□ -0.44
UPF2-202ENST00000357604 NUDT16Q96DE0 195 aaKnown RBP12.31□□□□□ -0.44
UPF2-202ENST00000357604 CABP2Q9NPB3 220 aa12.31□□□□□ -0.44
UPF2-202ENST00000357604 SMG6Q86US8 1419 aaKnown RBP12.31□□□□□ -0.44
UPF2-202ENST00000357604 MROH1Q8NDA8 1641 aa12.3□□□□□ -0.44
UPF2-202ENST00000357604 ABCC11Q96J66 1382 aa12.3□□□□□ -0.44
UPF2-202ENST00000357604 NKTRP30414 1462 aaKnown RBP12.3□□□□□ -0.44
UPF2-202ENST00000357604 PPM1GO15355 546 aaPredicted RBP12.3□□□□□ -0.44
UPF2-202ENST00000357604 LRRC59Q96AG4 307 aaKnown RBP12.3□□□□□ -0.44
UPF2-202ENST00000357604 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.29□□□□□ -0.441e-6■■■□□ 14.8
UPF2-202ENST00000357604 TMEM94Q12767 1356 aa12.29□□□□□ -0.44
UPF2-202ENST00000357604 SETD1BQ9UPS6 1966 aaKnown RBP12.29□□□□□ -0.44
UPF2-202ENST00000357604 HMGB2P26583 209 aaKnown RBP12.29□□□□□ -0.44
UPF2-202ENST00000357604 WAPLQ7Z5K2 1190 aa12.29□□□□□ -0.44
UPF2-202ENST00000357604 KCNH5Q8NCM2 988 aa12.29□□□□□ -0.44
UPF2-202ENST00000357604 IQGAP1P46940 1657 aa12.29□□□□□ -0.44
UPF2-202ENST00000357604 FAM135BQ49AJ0 1406 aa12.29□□□□□ -0.44
UPF2-202ENST00000357604 CCDC61Q9Y6R9 512 aa12.29□□□□□ -0.44
UPF2-202ENST00000357604 SPATA31E1Q6ZUB1 1445 aa12.29□□□□□ -0.44
UPF2-202ENST00000357604 ABTB2Q8N961 1025 aa12.28□□□□□ -0.44
UPF2-202ENST00000357604 PIK3C2GO75747 1445 aa12.28□□□□□ -0.44
UPF2-202ENST00000357604 ZNF142P52746 1687 aaPredicted RBP12.28□□□□□ -0.44
UPF2-202ENST00000357604 PUS7Q96PZ0 661 aaKnown RBP12.28□□□□□ -0.44
UPF2-202ENST00000357604 NUTM2BA6NNL0 878 aaPredicted RBP12.28□□□□□ -0.44
UPF2-202ENST00000357604 NUTM2EB1AL46 878 aaPredicted RBP12.28□□□□□ -0.44
UPF2-202ENST00000357604 NUTM2AQ8IVF1 878 aaPredicted RBP12.28□□□□□ -0.44
UPF2-202ENST00000357604 ZNF335Q9H4Z2 1342 aaPredicted RBP12.27□□□□□ -0.44
UPF2-202ENST00000357604 KRT28Q7Z3Y7 464 aa12.27□□□□□ -0.44
UPF2-202ENST00000357604 KDM5AP29375 1690 aaKnown RBP12.27□□□□□ -0.45
UPF2-202ENST00000357604 NBPF1Q3BBV0 1214 aa12.27□□□□□ -0.45
UPF2-202ENST00000357604 CFAP65Q6ZU64 1925 aaKnown RBP12.27□□□□□ -0.45
UPF2-202ENST00000357604 BRD4O60885 1362 aaPredicted RBP12.26□□□□□ -0.45
UPF2-202ENST00000357604 SOX12O15370 315 aa12.26□□□□□ -0.45
UPF2-202ENST00000357604 PMFBP1Q8TBY8 1022 aa12.26□□□□□ -0.45
UPF2-202ENST00000357604 RALBP1Q15311 655 aa12.25□□□□□ -0.45
UPF2-202ENST00000357604 NPM2Q86SE8 214 aaKnown RBP12.25□□□□□ -0.45
UPF2-202ENST00000357604 MAPK8IP3Q9UPT6 1336 aa12.25□□□□□ -0.45
UPF2-202ENST00000357604 SLAIN2Q9P270 581 aa12.25□□□□□ -0.45
UPF2-202ENST00000357604 DDX10Q13206 875 aaKnown RBP12.25□□□□□ -0.45
UPF2-202ENST00000357604 ALKQ9UM73 1620 aa12.25□□□□□ -0.45
UPF2-202ENST00000357604 PTCH1Q13635 1447 aa12.25□□□□□ -0.45
UPF2-202ENST00000357604 ARHGEF10O15013 1369 aa12.25□□□□□ -0.45
UPF2-202ENST00000357604 TTC21AQ8NDW8 1320 aa12.25□□□□□ -0.45
UPF2-202ENST00000357604 NLRP6P59044 892 aa12.24□□□□□ -0.45
UPF2-202ENST00000357604 ARHGAP23Q9P227 1491 aa12.24□□□□□ -0.45
UPF2-202ENST00000357604 DIEXFQ68CQ4 756 aaKnown RBP12.24□□□□□ -0.45
UPF2-202ENST00000357604 UBR1Q8IWV7 1749 aa12.23□□□□□ -0.45
UPF2-202ENST00000357604 TMEM131LA2VDJ0 1609 aa12.23□□□□□ -0.45
UPF2-202ENST00000357604 CC2D1BQ5T0F9 858 aaKnown RBP12.23□□□□□ -0.45
UPF2-202ENST00000357604 CABP1Q9NZU7 370 aa12.23□□□□□ -0.45
UPF2-202ENST00000357604 NEXMIFQ5QGS0 1516 aa12.23□□□□□ -0.45
UPF2-202ENST00000357604 ANKARQ7Z5J8 1434 aa12.23□□□□□ -0.45
UPF2-202ENST00000357604 MED14O60244 1454 aa12.22□□□□□ -0.45
UPF2-202ENST00000357604 PPIP5K1Q6PFW1 1433 aa12.22□□□□□ -0.45
UPF2-202ENST00000357604 ADGRL3Q9HAR2 1447 aa12.22□□□□□ -0.45
UPF2-202ENST00000357604 SETBP1Q9Y6X0 1596 aa12.21□□□□□ -0.45
UPF2-202ENST00000357604 NBPF8Q3BBV2 869 aa12.21□□□□□ -0.46
UPF2-202ENST00000357604 DLC1Q96QB1 1528 aa12.21□□□□□ -0.46
UPF2-202ENST00000357604 SF3B2Q13435 895 aaKnown RBP12.21□□□□□ -0.46
UPF2-202ENST00000357604 METP08581 1390 aa12.2□□□□□ -0.46
UPF2-202ENST00000357604 POLR1AO95602 1720 aaPredicted RBP12.2□□□□□ -0.46
UPF2-202ENST00000357604 PANK3Q9H999 370 aa12.2□□□□□ -0.46
UPF2-202ENST00000357604 TNNT2P45379 298 aaPredicted RBP12.19□□□□□ -0.46
UPF2-202ENST00000357604 DCCP43146 1447 aa12.19□□□□□ -0.46
UPF2-202ENST00000357604 PRDM11Q9NQV5 511 aa12.19□□□□□ -0.46
UPF2-202ENST00000357604 NSD2O96028 1365 aa12.19□□□□□ -0.46
UPF2-202ENST00000357604 FBXO41Q8TF61 875 aa12.18□□□□□ -0.46
UPF2-202ENST00000357604 NGLY1Q96IV0 654 aa12.18□□□□□ -0.46
UPF2-202ENST00000357604 RBM33Q96EV2 1170 aaKnown RBP12.17□□□□□ -0.46
UPF2-202ENST00000357604 U2SURPO15042 1029 aaKnown RBP12.17□□□□□ -0.46
UPF2-202ENST00000357604 RTF1Q92541 710 aaKnown RBP12.17□□□□□ -0.46
UPF2-202ENST00000357604 FOXO3O43524 673 aa12.16□□□□□ -0.46
UPF2-202ENST00000357604 ACEP12821 1306 aa12.16□□□□□ -0.46
UPF2-202ENST00000357604 CHMP4AQ9BY43 222 aa12.16□□□□□ -0.46
UPF2-202ENST00000357604 IQSEC2Q5JU85 1478 aa12.15□□□□□ -0.46
UPF2-202ENST00000357604 CALD1Q05682 793 aaKnown RBP12.15□□□□□ -0.46
UPF2-202ENST00000357604 KIAA1210Q9ULL0 1709 aa12.14□□□□□ -0.47
UPF2-202ENST00000357604 C1orf141Q5JVX7 400 aa12.14□□□□□ -0.47
UPF2-202ENST00000357604 ZNF772Q68DY9 489 aaPredicted RBP12.14□□□□□ -0.47
UPF2-202ENST00000357604 WASHC2AQ641Q2 1341 aa12.14□□□□□ -0.47
UPF2-202ENST00000357604 PPLO60437 1756 aa12.14□□□□□ -0.47
UPF2-202ENST00000357604 CENPBP07199 599 aaPredicted RBP12.14□□□□□ -0.47
UPF2-202ENST00000357604 XPCQ01831 940 aaPredicted RBP12.14□□□□□ -0.47
UPF2-202ENST00000357604 CCDC7Q96M83 1385 aa12.14□□□□□ -0.47
UPF2-202ENST00000357604 RAPGEF4Q8WZA2 1011 aa12.14□□□□□ -0.47
UPF2-202ENST00000357604 LMOD3Q0VAK6 560 aa12.14□□□□□ -0.47
UPF2-202ENST00000357604 NUTM2GQ5VZR2 741 aa12.13□□□□□ -0.47
UPF2-202ENST00000357604 ROBO2Q9HCK4 1378 aa12.13□□□□□ -0.47
UPF2-202ENST00000357604 MRS2Q9HD23 443 aa12.13□□□□□ -0.47
UPF2-202ENST00000357604 ADAMTS13Q76LX8 1427 aa12.13□□□□□ -0.47
UPF2-202ENST00000357604 LTV1Q96GA3 475 aaPredicted RBP12.12□□□□□ -0.47
UPF2-202ENST00000357604 ADAMTS2O95450 1211 aa12.12□□□□□ -0.47
UPF2-202ENST00000357604 TOM1L2Q6ZVM7 507 aa12.12□□□□□ -0.47
UPF2-202ENST00000357604 STRN4Q9NRL3 753 aa12.12□□□□□ -0.47
UPF2-202ENST00000357604 NLRP2Q9NX02 1062 aa12.12□□□□□ -0.47
UPF2-202ENST00000357604 ANKRD36BQ8N2N9 1353 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms