RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 OSBPP22059 807 aa3.73□□□□□ -1.81
VPS54-202ENST00000354504 FBXO31Q5XUX0 539 aaPredicted RBP3.73□□□□□ -1.81
VPS54-202ENST00000354504 TTC13Q8NBP0 860 aa3.73□□□□□ -1.81
VPS54-202ENST00000354504 ZDHHC16Q969W1 377 aa3.73□□□□□ -1.81
VPS54-202ENST00000354504 IFT172Q9UG01 1749 aa3.73□□□□□ -1.81
VPS54-202ENST00000354504 PLEKHG3A1L390 1219 aa3.73□□□□□ -1.81
VPS54-202ENST00000354504 KHSRPQ92945 711 aaKnown RBP eCLIP3.73□□□□□ -1.813e-7■■□□□ 13.7
VPS54-202ENST00000354504 ABCA9Q8IUA7 1624 aa3.72□□□□□ -1.81
VPS54-202ENST00000354504 SAMD9LQ8IVG5 1584 aa3.72□□□□□ -1.81
VPS54-202ENST00000354504 MAST1Q9Y2H9 1570 aa3.72□□□□□ -1.81
VPS54-202ENST00000354504 ABCC2Q92887 1545 aa3.72□□□□□ -1.81
VPS54-202ENST00000354504 ERICH6Q7L0X2 663 aa3.72□□□□□ -1.81
VPS54-202ENST00000354504 GPIHBP1Q8IV16 184 aa3.72□□□□□ -1.81
VPS54-202ENST00000354504 PCGF6Q9BYE7 350 aa3.72□□□□□ -1.81
VPS54-202ENST00000354504 KDM4CQ9H3R0 1056 aa3.72□□□□□ -1.81
VPS54-202ENST00000354504 DAXXQ9UER7 740 aaPredicted RBP3.72□□□□□ -1.81
VPS54-202ENST00000354504 E9PCH4 1651 aa3.72□□□□□ -1.81
VPS54-202ENST00000354504 TRIM66O15016 1216 aa3.72□□□□□ -1.81
VPS54-202ENST00000354504 PPARGC1BQ86YN6 1023 aaKnown RBP3.72□□□□□ -1.81
VPS54-202ENST00000354504 C1orf115Q9H7X2 142 aa3.71□□□□□ -1.82
VPS54-202ENST00000354504 KDM5DQ9BY66 1539 aa3.71□□□□□ -1.82
VPS54-202ENST00000354504 UNC13BO14795 1591 aa3.71□□□□□ -1.82
VPS54-202ENST00000354504 MROH1Q8NDA8 1641 aa3.71□□□□□ -1.82
VPS54-202ENST00000354504 DHX57Q6P158 1386 aaKnown RBP3.71□□□□□ -1.82
VPS54-202ENST00000354504 EVI5O60447 810 aa3.71□□□□□ -1.82
VPS54-202ENST00000354504 NUDT7P0C024 238 aa3.71□□□□□ -1.82
VPS54-202ENST00000354504 TSR1Q2NL82 804 aaKnown RBP3.71□□□□□ -1.82
VPS54-202ENST00000354504 ARHGEF5Q12774 1597 aa3.7□□□□□ -1.82
VPS54-202ENST00000354504 NCOA2Q15596 1464 aa3.7□□□□□ -1.82
VPS54-202ENST00000354504 CCDC18Q5T9S5 1454 aa3.7□□□□□ -1.82
VPS54-202ENST00000354504 NPDC1Q9NQX5 325 aaPredicted RBP3.7□□□□□ -1.82
VPS54-202ENST00000354504 PLA2G2EQ9NZK7 142 aa3.7□□□□□ -1.82
VPS54-202ENST00000354504 PLXNC1O60486 1568 aa3.7□□□□□ -1.82
VPS54-202ENST00000354504 PDE4DQ08499 809 aa3.7□□□□□ -1.82
VPS54-202ENST00000354504 CCDC102AQ96A19 550 aa3.7□□□□□ -1.82
VPS54-202ENST00000354504 NBPF3Q9H094 633 aa3.7□□□□□ -1.82
VPS54-202ENST00000354504 MAGI2Q86UL8 1455 aa3.7□□□□□ -1.82
VPS54-202ENST00000354504 C3orf80F5H4A9 247 aa3.69□□□□□ -1.82
VPS54-202ENST00000354504 DMRTA1Q5VZB9 504 aa3.69□□□□□ -1.82
VPS54-202ENST00000354504 SMYD5Q6GMV2 418 aa3.69□□□□□ -1.82
VPS54-202ENST00000354504 THSD4Q6ZMP0 1018 aa3.69□□□□□ -1.82
VPS54-202ENST00000354504 PARP9Q8IXQ6 854 aa3.69□□□□□ -1.82
VPS54-202ENST00000354504 ADGRL2O95490 1459 aa3.69□□□□□ -1.82
VPS54-202ENST00000354504 AKNAQ7Z591 1439 aa3.69□□□□□ -1.82
VPS54-202ENST00000354504 MBD5Q9P267 1494 aa3.69□□□□□ -1.82
VPS54-202ENST00000354504 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.69□□□□□ -1.82
VPS54-202ENST00000354504 MS4A1P11836 297 aa3.69□□□□□ -1.82
VPS54-202ENST00000354504 VWDEQ8N2E2 1590 aa3.68□□□□□ -1.82
VPS54-202ENST00000354504 INO80Q9ULG1 1556 aaPredicted RBP3.68□□□□□ -1.82
VPS54-202ENST00000354504 KIF13AQ9H1H9 1805 aa3.68□□□□□ -1.82
VPS54-202ENST00000354504 FGD6Q6ZV73 1430 aa3.68□□□□□ -1.82
VPS54-202ENST00000354504 PLB1Q6P1J6 1458 aa3.68□□□□□ -1.82
VPS54-202ENST00000354504 RNF17Q9BXT8 1623 aaKnown RBP3.68□□□□□ -1.82
VPS54-202ENST00000354504 C14orf37Q86TY3 774 aa3.68□□□□□ -1.82
VPS54-202ENST00000354504 NAIPQ13075 1403 aa3.68□□□□□ -1.82
VPS54-202ENST00000354504 UHRF1BP1LA0JNW5 1464 aa3.67□□□□□ -1.82
VPS54-202ENST00000354504 CEP152O94986 1710 aa3.67□□□□□ -1.82
VPS54-202ENST00000354504 IQGAP3Q86VI3 1631 aa3.67□□□□□ -1.82
VPS54-202ENST00000354504 FMN1Q68DA7 1419 aa3.67□□□□□ -1.82
VPS54-202ENST00000354504 MAP3K4Q9Y6R4 1608 aa3.67□□□□□ -1.82
VPS54-202ENST00000354504 ZC3H13Q5T200 1668 aaKnown RBP3.67□□□□□ -1.82
VPS54-202ENST00000354504 SOWAHBA6NEL2 793 aa3.67□□□□□ -1.82
VPS54-202ENST00000354504 HFM1A2PYH4 1435 aa3.67□□□□□ -1.82
VPS54-202ENST00000354504 RICTORQ6R327 1708 aa3.67□□□□□ -1.82
VPS54-202ENST00000354504 ATP10BO94823 1461 aa3.67□□□□□ -1.82
VPS54-202ENST00000354504 ARHGEF12Q9NZN5 1544 aa3.67□□□□□ -1.82
VPS54-202ENST00000354504 MYOM3Q5VTT5 1437 aa3.67□□□□□ -1.82
VPS54-202ENST00000354504 ARID3CA6NKF2 412 aa3.67□□□□□ -1.82
VPS54-202ENST00000354504 GPATCH8Q9UKJ3 1502 aaKnown RBP3.66□□□□□ -1.82
VPS54-202ENST00000354504 FRMPD1Q5SYB0 1578 aa3.66□□□□□ -1.82
VPS54-202ENST00000354504 KIDINS220Q9ULH0 1771 aa3.66□□□□□ -1.82
VPS54-202ENST00000354504 NUTM2FA1L443 756 aa3.66□□□□□ -1.82
VPS54-202ENST00000354504 UBTFP17480 764 aaKnown RBP3.66□□□□□ -1.82
VPS54-202ENST00000354504 PTGDRQ13258 359 aa3.66□□□□□ -1.82
VPS54-202ENST00000354504 PZPP20742 1482 aa3.66□□□□□ -1.82
VPS54-202ENST00000354504 TRIM6-TRIM34B2RNG4 842 aa3.66□□□□□ -1.82
VPS54-202ENST00000354504 STAC3Q96MF2 364 aa3.66□□□□□ -1.82
VPS54-202ENST00000354504 TMUB1Q9BVT8 246 aa3.66□□□□□ -1.82
VPS54-202ENST00000354504 ARAP3Q8WWN8 1544 aa3.66□□□□□ -1.82
VPS54-202ENST00000354504 AK7Q96M32 723 aa3.66□□□□□ -1.82
VPS54-202ENST00000354504 CCNB3Q8WWL7 1395 aa3.65□□□□□ -1.82
VPS54-202ENST00000354504 PTPRGP23470 1445 aa3.65□□□□□ -1.82
VPS54-202ENST00000354504 TEX14Q8IWB6 1497 aa3.65□□□□□ -1.82
VPS54-202ENST00000354504 SHANK2Q9UPX8 1470 aa3.65□□□□□ -1.82
VPS54-202ENST00000354504 IRF6O14896 467 aa3.65□□□□□ -1.82
VPS54-202ENST00000354504 KRI1Q8N9T8 703 aaKnown RBP3.65□□□□□ -1.82
VPS54-202ENST00000354504 PRR14Q9BWN1 585 aa3.65□□□□□ -1.82
VPS54-202ENST00000354504 LAMC1P11047 1609 aa3.65□□□□□ -1.82
VPS54-202ENST00000354504 MROH2AA6NES4 1674 aa3.65□□□□□ -1.82
VPS54-202ENST00000354504 TRPM1Q7Z4N2 1603 aa3.65□□□□□ -1.83
VPS54-202ENST00000354504 EN1Q05925 392 aaPredicted RBP3.65□□□□□ -1.83
VPS54-202ENST00000354504 RBM33Q96EV2 1170 aaKnown RBP3.65□□□□□ -1.83
VPS54-202ENST00000354504 PCDHGA10Q9Y5H3 936 aa3.65□□□□□ -1.83
VPS54-202ENST00000354504 ABCC1P33527 1531 aa3.65□□□□□ -1.83
VPS54-202ENST00000354504 SETD1AO15047 1707 aaKnown RBP3.65□□□□□ -1.83
VPS54-202ENST00000354504 SPHKAPQ2M3C7 1700 aa3.65□□□□□ -1.83
VPS54-202ENST00000354504 FAM98CQ17RN3 349 aaKnown RBP3.64□□□□□ -1.83
VPS54-202ENST00000354504 ANKRD13DQ6ZTN6 518 aa3.64□□□□□ -1.83
VPS54-202ENST00000354504 MIA2Q96PC5 1412 aa3.64□□□□□ -1.83
VPS54-202ENST00000354504 CAMSAP2Q08AD1 1489 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms