RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 MSH6P52701 1360 aa31.41■■■□□ 2.62
SHMT1-203ENST00000354098 CENPJQ9HC77 1338 aaPredicted RBP31.38■■■□□ 2.61
SHMT1-203ENST00000354098 MINK1Q8N4C8 1332 aaPredicted RBP31.37■■■□□ 2.61
SHMT1-203ENST00000354098 HIRIP3Q9BW71 556 aaPredicted RBP31.37■■■□□ 2.61
SHMT1-203ENST00000354098 EIF3AQ14152 1382 aaKnown RBP31.35■■■□□ 2.61
SHMT1-203ENST00000354098 USP47Q96K76 1375 aa31.32■■■□□ 2.61
SHMT1-203ENST00000354098 ATF3P18847 181 aa31.32■■■□□ 2.6
SHMT1-203ENST00000354098 UBAP1LF5GYI3 381 aa31.32■■■□□ 2.6
SHMT1-203ENST00000354098 ST20-MTHFSA0A0A6YYL1 179 aa31.3■■■□□ 2.6
SHMT1-203ENST00000354098 CADPS2Q86UW7 1296 aa31.3■■■□□ 2.6
SHMT1-203ENST00000354098 DCCP43146 1447 aa31.3■■■□□ 2.6
SHMT1-203ENST00000354098 QRICH2Q9H0J4 1663 aa31.29■■■□□ 2.6
SHMT1-203ENST00000354098 TOM1O60784 492 aa31.28■■■□□ 2.6
SHMT1-203ENST00000354098 CDC42BPGQ6DT37 1551 aa31.27■■■□□ 2.6
SHMT1-203ENST00000354098 ADGRB2O60241 1585 aa31.25■■■□□ 2.59
SHMT1-203ENST00000354098 NUTM2FA1L443 756 aa31.25■■■□□ 2.59
SHMT1-203ENST00000354098 ZEB1P37275 1124 aaPredicted RBP31.25■■■□□ 2.59
SHMT1-203ENST00000354098 SLAIN2Q9P270 581 aa31.25■■■□□ 2.59
SHMT1-203ENST00000354098 WASLO00401 505 aaPredicted RBP31.23■■■□□ 2.59
SHMT1-203ENST00000354098 MST1RQ04912 1400 aa31.23■■■□□ 2.59
SHMT1-203ENST00000354098 PIP4K2BP78356 416 aa31.22■■■□□ 2.59
SHMT1-203ENST00000354098 EIF4G2P78344 907 aaKnown RBP eCLIP31.21■■■□□ 2.59
SHMT1-203ENST00000354098 TESK2Q96S53 571 aa31.21■■■□□ 2.59
SHMT1-203ENST00000354098 CDK19Q9BWU1 502 aa31.2■■■□□ 2.59
SHMT1-203ENST00000354098 HSPA5P11021 654 aaKnown RBP31.19■■■□□ 2.58
SHMT1-203ENST00000354098 FMN2Q9NZ56 1722 aa31.19■■■□□ 2.58
SHMT1-203ENST00000354098 SBNO2Q9Y2G9 1366 aa31.18■■■□□ 2.58
SHMT1-203ENST00000354098 SCAF1Q9H7N4 1312 aaKnown RBP31.17■■■□□ 2.58
SHMT1-203ENST00000354098 TULP4Q9NRJ4 1543 aa31.17■■■□□ 2.58
SHMT1-203ENST00000354098 C1orf167Q5SNV9 1468 aa31.17■■■□□ 2.58
SHMT1-203ENST00000354098 EVC2Q86UK5 1308 aa31.14■■■□□ 2.58
SHMT1-203ENST00000354098 CABP2Q9NPB3 220 aa31.14■■■□□ 2.58
SHMT1-203ENST00000354098 PRR36Q9H6K5 1346 aa31.14■■■□□ 2.58
SHMT1-203ENST00000354098 ORAI2Q96SN7 254 aa31.13■■■□□ 2.57
SHMT1-203ENST00000354098 SRPK2P78362 688 aaKnown RBP31.13■■■□□ 2.57
SHMT1-203ENST00000354098 FBXO41Q8TF61 875 aa31.12■■■□□ 2.57
SHMT1-203ENST00000354098 USP32Q8NFA0 1604 aa31.12■■■□□ 2.57
SHMT1-203ENST00000354098 ESCO1Q5FWF5 840 aa31.1■■■□□ 2.57
SHMT1-203ENST00000354098 BRINP3Q76B58 766 aa31.1■■■□□ 2.57
SHMT1-203ENST00000354098 NUDT16Q96DE0 195 aaKnown RBP31.09■■■□□ 2.57
SHMT1-203ENST00000354098 ROBO1Q9Y6N7 1651 aa31.09■■■□□ 2.57
SHMT1-203ENST00000354098 RGPD8O14715 1765 aaPredicted RBP31.08■■■□□ 2.57
SHMT1-203ENST00000354098 ANKARQ7Z5J8 1434 aa31.08■■■□□ 2.57
SHMT1-203ENST00000354098 DISP3Q9P2K9 1392 aa31.07■■■□□ 2.56
SHMT1-203ENST00000354098 ATP7BP35670 1465 aa31.07■■■□□ 2.56
SHMT1-203ENST00000354098 TMF1P82094 1093 aa31.04■■■□□ 2.56
SHMT1-203ENST00000354098 SLC24A1O60721 1099 aa31.03■■■□□ 2.56
SHMT1-203ENST00000354098 DDX17Q92841 729 aaKnown RBP31.02■■■□□ 2.56
SHMT1-203ENST00000354098 PMFBP1Q8TBY8 1022 aa31.01■■■□□ 2.55
SHMT1-203ENST00000354098 CCDC61Q9Y6R9 512 aa31.01■■■□□ 2.55
SHMT1-203ENST00000354098 PHF8Q9UPP1 1060 aa31■■■□□ 2.55
SHMT1-203ENST00000354098 FOXO3O43524 673 aa30.97■■■□□ 2.55
SHMT1-203ENST00000354098 C11orf95C9JLR9 678 aaPredicted RBP30.97■■■□□ 2.55
SHMT1-203ENST00000354098 TOPAZ1Q8N9V7 1692 aa30.96■■■□□ 2.55
SHMT1-203ENST00000354098 PPIP5K1Q6PFW1 1433 aa30.96■■■□□ 2.55
SHMT1-203ENST00000354098 CABP1Q9NZU7 370 aa30.96■■■□□ 2.55
SHMT1-203ENST00000354098 ATAD2Q6PL18 1390 aa30.95■■■□□ 2.55
SHMT1-203ENST00000354098 PUS7Q96PZ0 661 aaKnown RBP30.94■■■□□ 2.54
SHMT1-203ENST00000354098 ITSN1Q15811 1721 aa30.93■■■□□ 2.54
SHMT1-203ENST00000354098 HSPA1LP34931 641 aa30.93■■■□□ 2.54
SHMT1-203ENST00000354098 PLEKHG3A1L390 1219 aa30.92■■■□□ 2.54
SHMT1-203ENST00000354098 KIF1AQ12756 1690 aa30.92■■■□□ 2.54
SHMT1-203ENST00000354098 XPCQ01831 940 aaPredicted RBP30.91■■■□□ 2.54
SHMT1-203ENST00000354098 CDCA8Q53HL2 280 aa30.9■■■□□ 2.54
SHMT1-203ENST00000354098 NGDNQ8NEJ9 315 aaKnown RBP30.9■■■□□ 2.54
SHMT1-203ENST00000354098 NHSL1Q5SYE7 1610 aa30.9■■■□□ 2.54
SHMT1-203ENST00000354098 TMC1Q8TDI8 760 aa30.9■■■□□ 2.54
SHMT1-203ENST00000354098 ACEP12821 1306 aa30.9■■■□□ 2.54
SHMT1-203ENST00000354098 AHDC1Q5TGY3 1603 aaPredicted RBP30.9■■■□□ 2.54
SHMT1-203ENST00000354098 ILDR1Q86SU0 546 aaPredicted RBP30.89■■■□□ 2.54
SHMT1-203ENST00000354098 SLC12A5Q9H2X9 1139 aa30.89■■■□□ 2.54
SHMT1-203ENST00000354098 POLR3GLQ9BT43 218 aa30.88■■■□□ 2.53
SHMT1-203ENST00000354098 NPHP3Q7Z494 1330 aa30.88■■■□□ 2.53
SHMT1-203ENST00000354098 PHLPP1O60346 1717 aa30.86■■■□□ 2.53
SHMT1-203ENST00000354098 POLR3AO14802 1390 aaPredicted RBP30.86■■■□□ 2.53
SHMT1-203ENST00000354098 PSME1Q06323 249 aa30.86■■■□□ 2.53
SHMT1-203ENST00000354098 SOS2Q07890 1332 aaPredicted RBP30.84■■■□□ 2.53
SHMT1-203ENST00000354098 KRT28Q7Z3Y7 464 aa30.84■■■□□ 2.53
SHMT1-203ENST00000354098 PXDNQ92626 1479 aa30.84■■■□□ 2.53
SHMT1-203ENST00000354098 KIF7Q2M1P5 1343 aa30.82■■■□□ 2.52
SHMT1-203ENST00000354098 COL16A1Q07092 1604 aaPredicted RBP30.82■■■□□ 2.52
SHMT1-203ENST00000354098 CD163L1Q9NR16 1453 aa30.79■■■□□ 2.52
SHMT1-203ENST00000354098 CPSF1Q10570 1443 aaKnown RBP30.78■■■□□ 2.52
SHMT1-203ENST00000354098 NINLQ9Y2I6 1382 aa30.77■■■□□ 2.52
SHMT1-203ENST00000354098 WASHC2AQ641Q2 1341 aa30.77■■■□□ 2.52
SHMT1-203ENST00000354098 MYOM1P52179 1685 aa30.77■■■□□ 2.52
SHMT1-203ENST00000354098 LRRC59Q96AG4 307 aaKnown RBP30.75■■■□□ 2.51
SHMT1-203ENST00000354098 CCDC7Q96M83 1385 aa30.75■■■□□ 2.51
SHMT1-203ENST00000354098 ZNF692Q9BU19 519 aaPredicted RBP30.74■■■□□ 2.51
SHMT1-203ENST00000354098 A0A1W2PP64 1363 aa30.74■■■□□ 2.51
SHMT1-203ENST00000354098 TERF2IPQ9NYB0 399 aa30.74■■■□□ 2.51
SHMT1-203ENST00000354098 USP6P35125 1406 aa30.74■■■□□ 2.51
SHMT1-203ENST00000354098 PAK3O75914 559 aaPredicted RBP30.73■■■□□ 2.51
SHMT1-203ENST00000354098 HDGFL2Q7Z4V5 671 aaPredicted RBP30.73■■■□□ 2.51
SHMT1-203ENST00000354098 KTN1Q86UP2 1357 aaKnown RBP30.73■■■□□ 2.51
SHMT1-203ENST00000354098 AKAP12Q02952 1782 aa30.72■■■□□ 2.51
SHMT1-203ENST00000354098 TRPM3Q9HCF6 1732 aaPredicted RBP30.72■■■□□ 2.51
SHMT1-203ENST00000354098 SPATA31A3Q5VYP0 1347 aa30.71■■■□□ 2.51
SHMT1-203ENST00000354098 SBNO1A3KN83 1393 aa30.71■■■□□ 2.51
SHMT1-203ENST00000354098 ANKRD36BQ8N2N9 1353 aa30.7■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms