RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 SLC52A1Q9NWF4 448 aa29.01■■■□□ 2.23
UPF3A-201ENST00000351487 NOP58Q9Y2X3 529 aaKnown RBP29■■■□□ 2.23
UPF3A-201ENST00000351487 E9PSI1 815 aa29■■■□□ 2.23
UPF3A-201ENST00000351487 MORC1Q86VD1 984 aa29■■■□□ 2.23
UPF3A-201ENST00000351487 EVC2Q86UK5 1308 aa28.99■■■□□ 2.23
UPF3A-201ENST00000351487 IDI1Q13907 227 aa28.98■■■□□ 2.23
UPF3A-201ENST00000351487 ANKRD36BQ8N2N9 1353 aa28.98■■■□□ 2.23
UPF3A-201ENST00000351487 SPINK5Q9NQ38 1064 aaPredicted RBP28.97■■■□□ 2.23
UPF3A-201ENST00000351487 NSD2O96028 1365 aa28.97■■■□□ 2.23
UPF3A-201ENST00000351487 CGNL1Q0VF96 1302 aa28.97■■■□□ 2.23
UPF3A-201ENST00000351487 IPO9Q96P70 1041 aaKnown RBP28.96■■■□□ 2.23
UPF3A-201ENST00000351487 KDM2BQ8NHM5 1336 aa28.96■■■□□ 2.23
UPF3A-201ENST00000351487 IQSEC2Q5JU85 1478 aa28.95■■■□□ 2.23
UPF3A-201ENST00000351487 PDE4AP27815 886 aa28.93■■■□□ 2.22
UPF3A-201ENST00000351487 NUTM2DQ5VT03 806 aaPredicted RBP28.92■■■□□ 2.22
UPF3A-201ENST00000351487 BACH2Q9BYV9 841 aa28.92■■■□□ 2.22
UPF3A-201ENST00000351487 NINLQ9Y2I6 1382 aa28.92■■■□□ 2.22
UPF3A-201ENST00000351487 CLTCQ00610 1675 aaKnown RBP28.9■■■□□ 2.22
UPF3A-201ENST00000351487 REREQ9P2R6 1566 aa28.89■■■□□ 2.22
UPF3A-201ENST00000351487 CENPQQ7L2Z9 268 aaPredicted RBP28.89■■■□□ 2.21
UPF3A-201ENST00000351487 PTPRMP28827 1452 aa28.88■■■□□ 2.21
UPF3A-201ENST00000351487 WWC1Q8IX03 1113 aa28.88■■■□□ 2.21
UPF3A-201ENST00000351487 DMRT2Q9Y5R5 561 aa28.88■■■□□ 2.21
UPF3A-201ENST00000351487 DIP2BQ9P265 1576 aa28.87■■■□□ 2.21
UPF3A-201ENST00000351487 RUNDC1Q96C34 613 aa28.86■■■□□ 2.21
UPF3A-201ENST00000351487 PAK3O75914 559 aaPredicted RBP28.86■■■□□ 2.21
UPF3A-201ENST00000351487 PHF23Q9BUL5 403 aaPredicted RBP28.85■■■□□ 2.21
UPF3A-201ENST00000351487 TNNT2P45379 298 aaPredicted RBP28.84■■■□□ 2.21
UPF3A-201ENST00000351487 MTHFSP49914 203 aa28.84■■■□□ 2.21
UPF3A-201ENST00000351487 CFAP53Q96M91 514 aa28.84■■■□□ 2.21
UPF3A-201ENST00000351487 ABCC11Q96J66 1382 aa28.83■■■□□ 2.21
UPF3A-201ENST00000351487 ANKRD26Q9UPS8 1709 aa28.83■■■□□ 2.21
UPF3A-201ENST00000351487 AGLP35573 1532 aa28.82■■■□□ 2.2
UPF3A-201ENST00000351487 CABP2Q9NPB3 220 aa28.81■■■□□ 2.2
UPF3A-201ENST00000351487 NCBP3Q53F19 620 aaKnown RBP28.81■■■□□ 2.2
UPF3A-201ENST00000351487 A0A1W2PP64 1363 aa28.8■■■□□ 2.2
UPF3A-201ENST00000351487 YTHDC2Q9H6S0 1430 aaKnown RBP28.8■■■□□ 2.2
UPF3A-201ENST00000351487 ADGRB2O60241 1585 aa28.8■■■□□ 2.2
UPF3A-201ENST00000351487 BCAR3O75815 825 aa28.79■■■□□ 2.2
UPF3A-201ENST00000351487 ATAD2Q6PL18 1390 aa28.79■■■□□ 2.2
UPF3A-201ENST00000351487 ZBTB47Q9UFB7 747 aaPredicted RBP28.79■■■□□ 2.2
UPF3A-201ENST00000351487 ALKQ9UM73 1620 aa28.79■■■□□ 2.2
UPF3A-201ENST00000351487 CCDC27Q2M243 656 aa28.78■■■□□ 2.2
UPF3A-201ENST00000351487 TCP11L2Q8N4U5 519 aa28.78■■■□□ 2.2
UPF3A-201ENST00000351487 RIMBP3CA6NJZ7 1639 aa28.77■■■□□ 2.2
UPF3A-201ENST00000351487 RIMBP3BA6NNM3 1639 aa28.77■■■□□ 2.2
UPF3A-201ENST00000351487 RIMBP3Q9UFD9 1639 aa28.77■■■□□ 2.2
UPF3A-201ENST00000351487 MED14O60244 1454 aa28.77■■■□□ 2.2
UPF3A-201ENST00000351487 PDE3AQ14432 1141 aa28.76■■■□□ 2.19
UPF3A-201ENST00000351487 CYB5RLQ6IPT4 315 aa28.76■■■□□ 2.19
UPF3A-201ENST00000351487 WDR63Q8IWG1 891 aa28.75■■■□□ 2.19
UPF3A-201ENST00000351487 SKAP1Q86WV1 359 aa28.74■■■□□ 2.19
UPF3A-201ENST00000351487 SAFB2Q14151 953 aaKnown RBP eCLIP28.74■■■□□ 2.19
UPF3A-201ENST00000351487 STK26Q9P289 416 aa28.74■■■□□ 2.19
UPF3A-201ENST00000351487 PPP6R1Q9UPN7 881 aa28.74■■■□□ 2.19
UPF3A-201ENST00000351487 CD163L1Q9NR16 1453 aa28.73■■■□□ 2.19
UPF3A-201ENST00000351487 TSPOAP1O95153 1857 aa28.72■■■□□ 2.19
UPF3A-201ENST00000351487 FBXO31Q5XUX0 539 aaPredicted RBP28.72■■■□□ 2.19
UPF3A-201ENST00000351487 SPATA31D1Q6ZQQ2 1576 aa28.72■■■□□ 2.19
UPF3A-201ENST00000351487 SRPK2P78362 688 aaKnown RBP28.71■■■□□ 2.19
UPF3A-201ENST00000351487 COL3A1P02461 1466 aaPredicted RBP28.71■■■□□ 2.19
UPF3A-201ENST00000351487 NLRP1Q9C000 1473 aa28.71■■■□□ 2.19
UPF3A-201ENST00000351487 FAM69CQ0P6D2 419 aa28.71■■■□□ 2.19
UPF3A-201ENST00000351487 PRAM1Q96QH2 718 aa28.7■■■□□ 2.18
UPF3A-201ENST00000351487 RRP7AQ9Y3A4 280 aaKnown RBP28.7■■■□□ 2.18
UPF3A-201ENST00000351487 ARHGEF40Q8TER5 1519 aa28.69■■■□□ 2.18
UPF3A-201ENST00000351487 NPM2Q86SE8 214 aaKnown RBP28.69■■■□□ 2.18
UPF3A-201ENST00000351487 DLC1Q96QB1 1528 aa28.69■■■□□ 2.18
UPF3A-201ENST00000351487 SETD1AO15047 1707 aaKnown RBP28.69■■■□□ 2.18
UPF3A-201ENST00000351487 NEUROD2Q15784 382 aa28.68■■■□□ 2.18
UPF3A-201ENST00000351487 TERF2IPQ9NYB0 399 aa28.67■■■□□ 2.18
UPF3A-201ENST00000351487 KIF20BQ96Q89 1820 aa28.67■■■□□ 2.18
UPF3A-201ENST00000351487 MINK1Q8N4C8 1332 aaPredicted RBP28.66■■■□□ 2.18
UPF3A-201ENST00000351487 POGKQ9P215 609 aa28.66■■■□□ 2.18
UPF3A-201ENST00000351487 A2ML1A8K2U0 1454 aa28.66■■■□□ 2.18
UPF3A-201ENST00000351487 RARSP54136 660 aaKnown RBP28.65■■■□□ 2.18
UPF3A-201ENST00000351487 U2AF1L5P0DN76 240 aaPredicted RBP28.64■■■□□ 2.18
UPF3A-201ENST00000351487 U2AF1Q01081 240 aaKnown RBP eCLIP28.64■■■□□ 2.18
UPF3A-201ENST00000351487 FYB1O15117 783 aa28.61■■■□□ 2.17
UPF3A-201ENST00000351487 GGNBP2Q9H3C7 697 aa28.61■■■□□ 2.17
UPF3A-201ENST00000351487 CANXP27824 592 aaKnown RBP28.6■■■□□ 2.17
UPF3A-201ENST00000351487 FAM161AQ3B820 660 aa28.6■■■□□ 2.17
UPF3A-201ENST00000351487 CLUAP1Q96AJ1 413 aa28.6■■■□□ 2.17
UPF3A-201ENST00000351487 MYH16Q9H6N6 1097 aa28.6■■■□□ 2.17
UPF3A-201ENST00000351487 VIRMAQ69YN4 1812 aaKnown RBP28.6■■■□□ 2.17
UPF3A-201ENST00000351487 AAMPQ13685 434 aa28.59■■■□□ 2.17
UPF3A-201ENST00000351487 STAG3Q9UJ98 1225 aa28.59■■■□□ 2.17
UPF3A-201ENST00000351487 SENP3Q9H4L4 574 aaPredicted RBP28.58■■■□□ 2.17
UPF3A-201ENST00000351487 C8orf34Q49A92 452 aa28.58■■■□□ 2.17
UPF3A-201ENST00000351487 PLEKHF1Q96S99 279 aa28.58■■■□□ 2.17
UPF3A-201ENST00000351487 RIMS2Q9UQ26 1411 aa28.57■■■□□ 2.16
UPF3A-201ENST00000351487 PANK1Q8TE04 598 aa28.57■■■□□ 2.16
UPF3A-201ENST00000351487 HDGFL2Q7Z4V5 671 aaPredicted RBP28.57■■■□□ 2.16
UPF3A-201ENST00000351487 CDK19Q9BWU1 502 aa28.57■■■□□ 2.16
UPF3A-201ENST00000351487 ATP7BP35670 1465 aa28.56■■■□□ 2.16
UPF3A-201ENST00000351487 DDRGK1Q96HY6 314 aa28.56■■■□□ 2.16
UPF3A-201ENST00000351487 COG6Q9Y2V7 657 aa28.56■■■□□ 2.16
UPF3A-201ENST00000351487 PNPLA6Q8IY17 1366 aa28.56■■■□□ 2.16
UPF3A-201ENST00000351487 CDC42BPGQ6DT37 1551 aa28.55■■■□□ 2.16
UPF3A-201ENST00000351487 IGHDP01880 384 aa28.54■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms