RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 HIRIP3Q9BW71 556 aaPredicted RBP31.2■■■□□ 2.58
SDC3-202ENST00000339394 MINK1Q8N4C8 1332 aaPredicted RBP31.2■■■□□ 2.58
SDC3-202ENST00000339394 C19orf44Q9H6X5 657 aa31.19■■■□□ 2.58
SDC3-202ENST00000339394 TESK2Q96S53 571 aa31.17■■■□□ 2.58
SDC3-202ENST00000339394 ADGRL3Q9HAR2 1447 aa31.17■■■□□ 2.58
SDC3-202ENST00000339394 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.15■■■□□ 2.58
SDC3-202ENST00000339394 MSH6P52701 1360 aa31.14■■■□□ 2.58
SDC3-202ENST00000339394 SBNO2Q9Y2G9 1366 aa31.14■■■□□ 2.58
SDC3-202ENST00000339394 CERKQ8TCT0 537 aa31.13■■■□□ 2.57
SDC3-202ENST00000339394 XIRP1Q702N8 1843 aaKnown RBP31.1■■■□□ 2.57
SDC3-202ENST00000339394 WASLO00401 505 aaPredicted RBP31.09■■■□□ 2.57
SDC3-202ENST00000339394 QRICH2Q9H0J4 1663 aa31.09■■■□□ 2.57
SDC3-202ENST00000339394 ATF3P18847 181 aa31.09■■■□□ 2.57
SDC3-202ENST00000339394 NALCNQ8IZF0 1738 aa31.08■■■□□ 2.57
SDC3-202ENST00000339394 SLC24A1O60721 1099 aa31.08■■■□□ 2.57
SDC3-202ENST00000339394 CADPS2Q86UW7 1296 aa31.07■■■□□ 2.56
SDC3-202ENST00000339394 CDK19Q9BWU1 502 aa31.06■■■□□ 2.56
SDC3-202ENST00000339394 DCCP43146 1447 aa31.06■■■□□ 2.56
SDC3-202ENST00000339394 EVC2Q86UK5 1308 aa31.06■■■□□ 2.56
SDC3-202ENST00000339394 ADGRB2O60241 1585 aa31.04■■■□□ 2.56
SDC3-202ENST00000339394 TMF1P82094 1093 aa31.04■■■□□ 2.56
SDC3-202ENST00000339394 IQSEC2Q5JU85 1478 aa31.03■■■□□ 2.56
SDC3-202ENST00000339394 CDC42BPGQ6DT37 1551 aa31.02■■■□□ 2.56
SDC3-202ENST00000339394 NUTM2FA1L443 756 aa31.02■■■□□ 2.56
SDC3-202ENST00000339394 SRPK2P78362 688 aaKnown RBP31.01■■■□□ 2.56
SDC3-202ENST00000339394 TULP4Q9NRJ4 1543 aa31.01■■■□□ 2.56
SDC3-202ENST00000339394 CABP2Q9NPB3 220 aa31■■■□□ 2.55
SDC3-202ENST00000339394 DISP3Q9P2K9 1392 aa31■■■□□ 2.55
SDC3-202ENST00000339394 C11orf95C9JLR9 678 aaPredicted RBP30.96■■■□□ 2.55
SDC3-202ENST00000339394 SLAIN2Q9P270 581 aa30.96■■■□□ 2.55
SDC3-202ENST00000339394 MST1RQ04912 1400 aa30.95■■■□□ 2.55
SDC3-202ENST00000339394 NUDT16Q96DE0 195 aaKnown RBP30.95■■■□□ 2.54
SDC3-202ENST00000339394 PRR36Q9H6K5 1346 aa30.94■■■□□ 2.54
SDC3-202ENST00000339394 TOM1O60784 492 aa30.94■■■□□ 2.54
SDC3-202ENST00000339394 CDCA8Q53HL2 280 aa30.93■■■□□ 2.54
SDC3-202ENST00000339394 UBAP1LF5GYI3 381 aa30.92■■■□□ 2.54
SDC3-202ENST00000339394 PUS7Q96PZ0 661 aaKnown RBP30.92■■■□□ 2.54
SDC3-202ENST00000339394 C1orf167Q5SNV9 1468 aa30.92■■■□□ 2.54
SDC3-202ENST00000339394 ANKARQ7Z5J8 1434 aa30.91■■■□□ 2.54
SDC3-202ENST00000339394 CCDC61Q9Y6R9 512 aa30.9■■■□□ 2.54
SDC3-202ENST00000339394 FMN2Q9NZ56 1722 aa30.89■■■□□ 2.54
SDC3-202ENST00000339394 ATP7BP35670 1465 aa30.89■■■□□ 2.54
SDC3-202ENST00000339394 ESCO1Q5FWF5 840 aa30.88■■■□□ 2.53
SDC3-202ENST00000339394 ORAI2Q96SN7 254 aa30.88■■■□□ 2.53
SDC3-202ENST00000339394 ATAD2Q6PL18 1390 aa30.87■■■□□ 2.53
SDC3-202ENST00000339394 POLR3GLQ9BT43 218 aa30.86■■■□□ 2.53
SDC3-202ENST00000339394 KIF7Q2M1P5 1343 aa30.85■■■□□ 2.53
SDC3-202ENST00000339394 USP32Q8NFA0 1604 aa30.84■■■□□ 2.53
SDC3-202ENST00000339394 CABP1Q9NZU7 370 aa30.83■■■□□ 2.53
SDC3-202ENST00000339394 PIP4K2BP78356 416 aa30.83■■■□□ 2.53
SDC3-202ENST00000339394 BRINP3Q76B58 766 aa30.83■■■□□ 2.53
SDC3-202ENST00000339394 WASHC2AQ641Q2 1341 aa30.82■■■□□ 2.52
SDC3-202ENST00000339394 PMFBP1Q8TBY8 1022 aa30.81■■■□□ 2.52
SDC3-202ENST00000339394 TMC1Q8TDI8 760 aa30.81■■■□□ 2.52
SDC3-202ENST00000339394 PHF8Q9UPP1 1060 aa30.81■■■□□ 2.52
SDC3-202ENST00000339394 PPIP5K1Q6PFW1 1433 aa30.8■■■□□ 2.52
SDC3-202ENST00000339394 PLEKHG3A1L390 1219 aa30.79■■■□□ 2.52
SDC3-202ENST00000339394 SLC12A5Q9H2X9 1139 aa30.79■■■□□ 2.52
SDC3-202ENST00000339394 CCDC7Q96M83 1385 aa30.78■■■□□ 2.52
SDC3-202ENST00000339394 SCAF1Q9H7N4 1312 aaKnown RBP30.78■■■□□ 2.52
SDC3-202ENST00000339394 ZNF316A6NFI3 1004 aaPredicted RBP30.75■■■□□ 2.51
SDC3-202ENST00000339394 FOXO3O43524 673 aa30.75■■■□□ 2.51
SDC3-202ENST00000339394 NINLQ9Y2I6 1382 aa30.74■■■□□ 2.51
SDC3-202ENST00000339394 ACEP12821 1306 aa30.74■■■□□ 2.51
SDC3-202ENST00000339394 NGDNQ8NEJ9 315 aaKnown RBP30.74■■■□□ 2.51
SDC3-202ENST00000339394 RGPD8O14715 1765 aaPredicted RBP30.74■■■□□ 2.51
SDC3-202ENST00000339394 TOPAZ1Q8N9V7 1692 aa30.72■■■□□ 2.51
SDC3-202ENST00000339394 DDX17Q92841 729 aaKnown RBP30.71■■■□□ 2.51
SDC3-202ENST00000339394 POLR3AO14802 1390 aaPredicted RBP30.7■■■□□ 2.51
SDC3-202ENST00000339394 ROBO1Q9Y6N7 1651 aa30.69■■■□□ 2.5
SDC3-202ENST00000339394 ITSN1Q15811 1721 aa30.68■■■□□ 2.5
SDC3-202ENST00000339394 NPHP3Q7Z494 1330 aa30.68■■■□□ 2.5
SDC3-202ENST00000339394 TERF2IPQ9NYB0 399 aa30.67■■■□□ 2.5
SDC3-202ENST00000339394 PSME1Q06323 249 aa30.66■■■□□ 2.5
SDC3-202ENST00000339394 CD163L1Q9NR16 1453 aa30.66■■■□□ 2.5
SDC3-202ENST00000339394 ZNF692Q9BU19 519 aaPredicted RBP30.66■■■□□ 2.5
SDC3-202ENST00000339394 CPSF1Q10570 1443 aaKnown RBP30.65■■■□□ 2.5
SDC3-202ENST00000339394 XPCQ01831 940 aaPredicted RBP30.65■■■□□ 2.5
SDC3-202ENST00000339394 HDGFL2Q7Z4V5 671 aaPredicted RBP30.65■■■□□ 2.5
SDC3-202ENST00000339394 A0A1W2PP64 1363 aa30.64■■■□□ 2.5
SDC3-202ENST00000339394 KIF1AQ12756 1690 aa30.64■■■□□ 2.5
SDC3-202ENST00000339394 ANKRD36BQ8N2N9 1353 aa30.63■■■□□ 2.49
SDC3-202ENST00000339394 KRT28Q7Z3Y7 464 aa30.62■■■□□ 2.49
SDC3-202ENST00000339394 PANK3Q9H999 370 aa30.62■■■□□ 2.49
SDC3-202ENST00000339394 MYOM1P52179 1685 aa30.61■■■□□ 2.49
SDC3-202ENST00000339394 KTN1Q86UP2 1357 aaKnown RBP30.6■■■□□ 2.49
SDC3-202ENST00000339394 FBXO41Q8TF61 875 aa30.6■■■□□ 2.49
SDC3-202ENST00000339394 SOS2Q07890 1332 aaPredicted RBP30.6■■■□□ 2.49
SDC3-202ENST00000339394 USP6P35125 1406 aa30.58■■■□□ 2.49
SDC3-202ENST00000339394 CARD14Q9BXL6 1004 aa30.58■■■□□ 2.49
SDC3-202ENST00000339394 PXDNQ92626 1479 aa30.57■■■□□ 2.48
SDC3-202ENST00000339394 AHDC1Q5TGY3 1603 aaPredicted RBP30.55■■■□□ 2.48
SDC3-202ENST00000339394 DDX10Q13206 875 aaKnown RBP30.54■■■□□ 2.48
SDC3-202ENST00000339394 NHSL1Q5SYE7 1610 aa30.54■■■□□ 2.48
SDC3-202ENST00000339394 PAK3O75914 559 aaPredicted RBP30.54■■■□□ 2.48
SDC3-202ENST00000339394 SSH2Q76I76 1423 aa30.53■■■□□ 2.48
SDC3-202ENST00000339394 BRD4O60885 1362 aaPredicted RBP30.51■■■□□ 2.48
SDC3-202ENST00000339394 TTC21BQ7Z4L5 1316 aa30.51■■■□□ 2.48
SDC3-202ENST00000339394 HSPA1LP34931 641 aa30.51■■■□□ 2.47
SDC3-202ENST00000339394 EDC4Q6P2E9 1401 aaKnown RBP30.51■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms