RNA–Protein interactions for RNA: ENST00000331163.10

PDGFB-201, Transcript of platelet derived growth factor subunit B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFB, Length 3,497 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFB-201ENST00000331163 ERVK-7P63135 1459 aa20.93■□□□□ 0.94
PDGFB-201ENST00000331163 NSD3Q9BZ95 1437 aa20.93■□□□□ 0.94
PDGFB-201ENST00000331163 TRPM2O94759 1503 aa20.93■□□□□ 0.94
PDGFB-201ENST00000331163 WASLO00401 505 aaPredicted RBP20.93■□□□□ 0.94
PDGFB-201ENST00000331163 NBR1Q14596 966 aa20.93■□□□□ 0.94
PDGFB-201ENST00000331163 COG3Q96JB2 828 aa20.92■□□□□ 0.94
PDGFB-201ENST00000331163 CCDC61Q9Y6R9 512 aa20.91■□□□□ 0.94
PDGFB-201ENST00000331163 GLI2P10070 1586 aa20.91■□□□□ 0.94
PDGFB-201ENST00000331163 TMEM2Q9UHN6 1383 aa20.91■□□□□ 0.94
PDGFB-201ENST00000331163 TET3O43151 1660 aa20.9■□□□□ 0.94
PDGFB-201ENST00000331163 ABTB2Q8N961 1025 aa20.9■□□□□ 0.94
PDGFB-201ENST00000331163 DDX17Q92841 729 aaKnown RBP20.9■□□□□ 0.94
PDGFB-201ENST00000331163 CDCA7LQ96GN5 454 aa20.9■□□□□ 0.94
PDGFB-201ENST00000331163 ATF3P18847 181 aa20.89■□□□□ 0.93
PDGFB-201ENST00000331163 AMPHP49418 695 aa20.89■□□□□ 0.93
PDGFB-201ENST00000331163 AEBP2Q6ZN18 517 aaPredicted RBP20.89■□□□□ 0.93
PDGFB-201ENST00000331163 NUDCQ9Y266 331 aa20.89■□□□□ 0.93
PDGFB-201ENST00000331163 MAPK8IP3Q9UPT6 1336 aa20.89■□□□□ 0.93
PDGFB-201ENST00000331163 RNF17Q9BXT8 1623 aaKnown RBP20.89■□□□□ 0.93
PDGFB-201ENST00000331163 YTHDC2Q9H6S0 1430 aaKnown RBP20.88■□□□□ 0.93
PDGFB-201ENST00000331163 PER1O15534 1290 aaPredicted RBP20.87■□□□□ 0.93
PDGFB-201ENST00000331163 PNISRQ8TF01 805 aaKnown RBP20.86■□□□□ 0.93
PDGFB-201ENST00000331163 CLTCQ00610 1675 aaKnown RBP20.86■□□□□ 0.93
PDGFB-201ENST00000331163 EMILIN1Q9Y6C2 1016 aa20.85■□□□□ 0.93
PDGFB-201ENST00000331163 RICTORQ6R327 1708 aa20.84■□□□□ 0.93
PDGFB-201ENST00000331163 AMER1Q5JTC6 1135 aaPredicted RBP20.84■□□□□ 0.93
PDGFB-201ENST00000331163 ELL2O00472 640 aaPredicted RBP20.83■□□□□ 0.93
PDGFB-201ENST00000331163 FRAT1Q92837 279 aaPredicted RBP20.83■□□□□ 0.92
PDGFB-201ENST00000331163 SPHKAPQ2M3C7 1700 aa20.83■□□□□ 0.92
PDGFB-201ENST00000331163 BCL2L13Q9BXK5 485 aa20.82■□□□□ 0.92
PDGFB-201ENST00000331163 ACEP12821 1306 aa20.82■□□□□ 0.92
PDGFB-201ENST00000331163 PIP4K2BP78356 416 aa20.81■□□□□ 0.92
PDGFB-201ENST00000331163 PLIN1O60240 522 aa20.81■□□□□ 0.92
PDGFB-201ENST00000331163 ORAI2Q96SN7 254 aa20.8■□□□□ 0.92
PDGFB-201ENST00000331163 KIF13AQ9H1H9 1805 aa20.8■□□□□ 0.92
PDGFB-201ENST00000331163 TCERG1O14776 1098 aaKnown RBP20.8■□□□□ 0.92
PDGFB-201ENST00000331163 ZC3H6P61129 1189 aaKnown RBP20.8■□□□□ 0.92
PDGFB-201ENST00000331163 MROH1Q8NDA8 1641 aa20.79■□□□□ 0.92
PDGFB-201ENST00000331163 A2ML1A8K2U0 1454 aa20.79■□□□□ 0.92
PDGFB-201ENST00000331163 CSB-PGBD3P0DP91 1061 aa20.79■□□□□ 0.92
PDGFB-201ENST00000331163 USP35Q9P2H5 1018 aa20.79■□□□□ 0.92
PDGFB-201ENST00000331163 GPRASP1Q5JY77 1395 aa20.79■□□□□ 0.92
PDGFB-201ENST00000331163 FYB1O15117 783 aa20.79■□□□□ 0.92
PDGFB-201ENST00000331163 B4GALNT3Q6L9W6 998 aa20.79■□□□□ 0.92
PDGFB-201ENST00000331163 KIF1BO60333 1816 aa20.78■□□□□ 0.92
PDGFB-201ENST00000331163 PIK3C2GO75747 1445 aa20.77■□□□□ 0.92
PDGFB-201ENST00000331163 DEKP35659 375 aaKnown RBP20.77■□□□□ 0.92
PDGFB-201ENST00000331163 ROBO2Q9HCK4 1378 aa20.76■□□□□ 0.91
PDGFB-201ENST00000331163 CAMSAP1Q5T5Y3 1602 aa20.76■□□□□ 0.91
PDGFB-201ENST00000331163 DIAPH1O60610 1272 aaKnown RBP20.76■□□□□ 0.91
PDGFB-201ENST00000331163 ARHGAP31Q2M1Z3 1444 aa20.75■□□□□ 0.91
PDGFB-201ENST00000331163 CABLES1Q8TDN4 633 aa20.75■□□□□ 0.91
PDGFB-201ENST00000331163 BCORL1Q5H9F3 1711 aa20.75■□□□□ 0.91
PDGFB-201ENST00000331163 TBX22Q9Y458 520 aa20.74■□□□□ 0.91
PDGFB-201ENST00000331163 A0A1W2PP64 1363 aa20.74■□□□□ 0.91
PDGFB-201ENST00000331163 ATAD2Q6PL18 1390 aa20.74■□□□□ 0.91
PDGFB-201ENST00000331163 ARHGEF40Q8TER5 1519 aa20.73■□□□□ 0.91
PDGFB-201ENST00000331163 PHF8Q9UPP1 1060 aa20.73■□□□□ 0.91
PDGFB-201ENST00000331163 USHBP1Q8N6Y0 703 aa20.72■□□□□ 0.91
PDGFB-201ENST00000331163 SYNMO15061 1565 aa20.71■□□□□ 0.91
PDGFB-201ENST00000331163 THUMPD2Q9BTF0 503 aaKnown RBP20.71■□□□□ 0.91
PDGFB-201ENST00000331163 EIF2AK4Q9P2K8 1649 aaKnown RBP20.71■□□□□ 0.91
PDGFB-201ENST00000331163 TCP11L2Q8N4U5 519 aa20.7■□□□□ 0.91
PDGFB-201ENST00000331163 PPIP5K1Q6PFW1 1433 aa20.7■□□□□ 0.9
PDGFB-201ENST00000331163 CLUAP1Q96AJ1 413 aa20.7■□□□□ 0.9
PDGFB-201ENST00000331163 LRPPRCP42704 1394 aaKnown RBP20.7■□□□□ 0.9
PDGFB-201ENST00000331163 PRKAR2BP31323 418 aa20.69■□□□□ 0.9
PDGFB-201ENST00000331163 BRD4O60885 1362 aaPredicted RBP20.67■□□□□ 0.9
PDGFB-201ENST00000331163 PRR36Q9H6K5 1346 aa20.67■□□□□ 0.9
PDGFB-201ENST00000331163 HSP90AB2PQ58FF8 381 aa20.67■□□□□ 0.9
PDGFB-201ENST00000331163 SULT6B1Q6IMI4 303 aa20.67■□□□□ 0.9
PDGFB-201ENST00000331163 CCDC136Q96JN2 1154 aa20.66■□□□□ 0.9
PDGFB-201ENST00000331163 RIPK4P57078 832 aa20.66■□□□□ 0.9
PDGFB-201ENST00000331163 KDM4FA0A1W2PPD8 638 aa20.66■□□□□ 0.9
PDGFB-201ENST00000331163 ZMYM4Q5VZL5 1548 aa20.65■□□□□ 0.9
PDGFB-201ENST00000331163 GOLGA2Q08379 1002 aa20.65■□□□□ 0.9
PDGFB-201ENST00000331163 LMTK2Q8IWU2 1503 aa20.65■□□□□ 0.9
PDGFB-201ENST00000331163 DCTN1Q14203 1278 aa20.65■□□□□ 0.9
PDGFB-201ENST00000331163 CHRNA2Q15822 529 aa20.65■□□□□ 0.9
PDGFB-201ENST00000331163 CCDC9Q9Y3X0 531 aaKnown RBP20.65■□□□□ 0.9
PDGFB-201ENST00000331163 MADDQ8WXG6 1647 aa20.64■□□□□ 0.9
PDGFB-201ENST00000331163 ZNF335Q9H4Z2 1342 aaPredicted RBP20.64■□□□□ 0.9
PDGFB-201ENST00000331163 NECTIN2Q92692 538 aa20.64■□□□□ 0.9
PDGFB-201ENST00000331163 ADGRB3O60242 1522 aa20.64■□□□□ 0.89
PDGFB-201ENST00000331163 NUTM2BA6NNL0 878 aaPredicted RBP20.64■□□□□ 0.89
PDGFB-201ENST00000331163 NUTM2EB1AL46 878 aaPredicted RBP20.64■□□□□ 0.89
PDGFB-201ENST00000331163 NUTM2AQ8IVF1 878 aaPredicted RBP20.64■□□□□ 0.89
PDGFB-201ENST00000331163 RCAN3Q9UKA8 241 aa20.64■□□□□ 0.89
PDGFB-201ENST00000331163 VWDEQ8N2E2 1590 aa20.64■□□□□ 0.89
PDGFB-201ENST00000331163 ARXQ96QS3 562 aa20.63■□□□□ 0.89
PDGFB-201ENST00000331163 ZNF692Q9BU19 519 aaPredicted RBP20.63■□□□□ 0.89
PDGFB-201ENST00000331163 MROH2AA6NES4 1674 aa20.63■□□□□ 0.89
PDGFB-201ENST00000331163 PIK3C2BO00750 1634 aa20.63■□□□□ 0.89
PDGFB-201ENST00000331163 TSR2Q969E8 191 aaKnown RBP20.63■□□□□ 0.89
PDGFB-201ENST00000331163 TRPM1Q7Z4N2 1603 aa20.63■□□□□ 0.89
PDGFB-201ENST00000331163 ZBED9Q6R2W3 1325 aa20.63■□□□□ 0.89
PDGFB-201ENST00000331163 DEPDC5O75140 1603 aa20.62■□□□□ 0.89
PDGFB-201ENST00000331163 ZNF428Q96B54 188 aa20.62■□□□□ 0.89
PDGFB-201ENST00000331163 STRN4Q9NRL3 753 aa20.62■□□□□ 0.89
PDGFB-201ENST00000331163 FANCIQ9NVI1 1328 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms