RNA–Protein interactions for RNA: ENST00000309279.11

CHD6-201, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

TSL 1 (best) BASIC

Gene CHD6, Length 1,635 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-201ENST00000309279 PDE4CQ08493 712 aa11.68□□□□□ -0.54
CHD6-201ENST00000309279 ASXL1Q8IXJ9 1541 aa11.67□□□□□ -0.54
CHD6-201ENST00000309279 XRN1Q8IZH2 1706 aaKnown RBP11.67□□□□□ -0.54
CHD6-201ENST00000309279 ADGRB1O14514 1584 aa11.67□□□□□ -0.54
CHD6-201ENST00000309279 AMOTL2Q9Y2J4 779 aa11.67□□□□□ -0.54
CHD6-201ENST00000309279 NKTRP30414 1462 aaKnown RBP11.67□□□□□ -0.54
CHD6-201ENST00000309279 NBR1Q14596 966 aa11.65□□□□□ -0.54
CHD6-201ENST00000309279 NBPF8Q3BBV2 869 aa11.65□□□□□ -0.54
CHD6-201ENST00000309279 TMEM132EQ6IEE7 984 aa11.65□□□□□ -0.54
CHD6-201ENST00000309279 LRPPRCP42704 1394 aaKnown RBP11.65□□□□□ -0.54
CHD6-201ENST00000309279 ABCC11Q96J66 1382 aa11.65□□□□□ -0.54
CHD6-201ENST00000309279 TECPR2O15040 1411 aa11.65□□□□□ -0.55
CHD6-201ENST00000309279 LRRC7Q96NW7 1537 aa11.64□□□□□ -0.55
CHD6-201ENST00000309279 TRPM1Q7Z4N2 1603 aa11.64□□□□□ -0.55
CHD6-201ENST00000309279 YTHDC2Q9H6S0 1430 aaKnown RBP11.64□□□□□ -0.55
CHD6-201ENST00000309279 KNDC1Q76NI1 1749 aa11.63□□□□□ -0.55
CHD6-201ENST00000309279 PTCH1Q13635 1447 aa11.63□□□□□ -0.55
CHD6-201ENST00000309279 NBPF1Q3BBV0 1214 aa11.63□□□□□ -0.55
CHD6-201ENST00000309279 SIRT1Q96EB6 747 aa11.63□□□□□ -0.55
CHD6-201ENST00000309279 XIRP1Q702N8 1843 aaKnown RBP11.63□□□□□ -0.55
CHD6-201ENST00000309279 NCOA3Q9Y6Q9 1424 aa11.63□□□□□ -0.55
CHD6-201ENST00000309279 PROSER2Q86WR7 435 aaPredicted RBP11.62□□□□□ -0.55
CHD6-201ENST00000309279 DHX37Q8IY37 1157 aaKnown RBP11.62□□□□□ -0.55
CHD6-201ENST00000309279 IQSEC2Q5JU85 1478 aa11.62□□□□□ -0.55
CHD6-201ENST00000309279 CERKQ8TCT0 537 aa11.61□□□□□ -0.55
CHD6-201ENST00000309279 GPRASP1Q5JY77 1395 aa11.61□□□□□ -0.55
CHD6-201ENST00000309279 ROBO2Q9HCK4 1378 aa11.61□□□□□ -0.55
CHD6-201ENST00000309279 TMEM94Q12767 1356 aa11.6□□□□□ -0.55
CHD6-201ENST00000309279 FAM135BQ49AJ0 1406 aa11.6□□□□□ -0.55
CHD6-201ENST00000309279 TAF7LQ5H9L4 462 aa11.6□□□□□ -0.55
CHD6-201ENST00000309279 RALGAPBQ86X10 1494 aa11.6□□□□□ -0.55
CHD6-201ENST00000309279 DLC1Q96QB1 1528 aa11.6□□□□□ -0.55
CHD6-201ENST00000309279 STK26Q9P289 416 aa11.6□□□□□ -0.55
CHD6-201ENST00000309279 ROCK2O75116 1388 aaKnown RBP11.59□□□□□ -0.55
CHD6-201ENST00000309279 RBM33Q96EV2 1170 aaKnown RBP11.58□□□□□ -0.56
CHD6-201ENST00000309279 ARHGEF28Q8N1W1 1705 aaKnown RBP11.58□□□□□ -0.56
CHD6-201ENST00000309279 TRAK1Q9UPV9 953 aa11.57□□□□□ -0.56
CHD6-201ENST00000309279 WAPLQ7Z5K2 1190 aa11.57□□□□□ -0.56
CHD6-201ENST00000309279 C19orf44Q9H6X5 657 aa11.57□□□□□ -0.56
CHD6-201ENST00000309279 PLEKHH1Q9ULM0 1364 aa11.56□□□□□ -0.56
CHD6-201ENST00000309279 PRAM1Q96QH2 718 aa11.56□□□□□ -0.56
CHD6-201ENST00000309279 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.55□□□□□ -0.56
CHD6-201ENST00000309279 PUS7Q96PZ0 661 aaKnown RBP11.55□□□□□ -0.56
CHD6-201ENST00000309279 CARD11Q9BXL7 1154 aa11.55□□□□□ -0.56
CHD6-201ENST00000309279 ADGRL3Q9HAR2 1447 aa11.55□□□□□ -0.56
CHD6-201ENST00000309279 NALCNQ8IZF0 1738 aa11.55□□□□□ -0.56
CHD6-201ENST00000309279 MSH6P52701 1360 aa11.55□□□□□ -0.56
CHD6-201ENST00000309279 NEFLP07196 543 aa11.54□□□□□ -0.56
CHD6-201ENST00000309279 DCCP43146 1447 aa11.54□□□□□ -0.56
CHD6-201ENST00000309279 POGKQ9P215 609 aa11.53□□□□□ -0.56
CHD6-201ENST00000309279 PAXIP1Q6ZW49 1069 aaPredicted RBP11.53□□□□□ -0.56
CHD6-201ENST00000309279 FOXD4L1Q9NU39 408 aa11.53□□□□□ -0.56
CHD6-201ENST00000309279 CADPS2Q86UW7 1296 aa11.52□□□□□ -0.57
CHD6-201ENST00000309279 EIF3AQ14152 1382 aaKnown RBP11.52□□□□□ -0.57
CHD6-201ENST00000309279 CENPJQ9HC77 1338 aaPredicted RBP11.51□□□□□ -0.57
CHD6-201ENST00000309279 TOM1O60784 492 aa11.51□□□□□ -0.57
CHD6-201ENST00000309279 ADGRB2O60241 1585 aa11.51□□□□□ -0.57
CHD6-201ENST00000309279 CDC42BPGQ6DT37 1551 aa11.51□□□□□ -0.57
CHD6-201ENST00000309279 ATF3P18847 181 aa11.5□□□□□ -0.57
CHD6-201ENST00000309279 SAFB2Q14151 953 aaKnown RBP eCLIP11.5□□□□□ -0.57
CHD6-201ENST00000309279 SBNO2Q9Y2G9 1366 aa11.5□□□□□ -0.57
CHD6-201ENST00000309279 UBAP1LF5GYI3 381 aa11.49□□□□□ -0.57
CHD6-201ENST00000309279 SLAIN2Q9P270 581 aa11.49□□□□□ -0.57
CHD6-201ENST00000309279 QRICH2Q9H0J4 1663 aa11.49□□□□□ -0.57
CHD6-201ENST00000309279 USP47Q96K76 1375 aa11.49□□□□□ -0.57
CHD6-201ENST00000309279 TSHZ2Q9NRE2 1034 aa11.49□□□□□ -0.57
CHD6-201ENST00000309279 MINK1Q8N4C8 1332 aaPredicted RBP11.48□□□□□ -0.57
CHD6-201ENST00000309279 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.48□□□□□ -0.57
CHD6-201ENST00000309279 MST1RQ04912 1400 aa11.48□□□□□ -0.57
CHD6-201ENST00000309279 ST20-MTHFSA0A0A6YYL1 179 aa11.47□□□□□ -0.57
CHD6-201ENST00000309279 WASLO00401 505 aaPredicted RBP11.47□□□□□ -0.57
CHD6-201ENST00000309279 HIRIP3Q9BW71 556 aaPredicted RBP11.47□□□□□ -0.57
CHD6-201ENST00000309279 FMN2Q9NZ56 1722 aa11.47□□□□□ -0.57
CHD6-201ENST00000309279 ZEB1P37275 1124 aaPredicted RBP11.46□□□□□ -0.57
CHD6-201ENST00000309279 FBXO41Q8TF61 875 aa11.46□□□□□ -0.57
CHD6-201ENST00000309279 CFAP44Q96MT7 982 aa11.46□□□□□ -0.57
CHD6-201ENST00000309279 TESK2Q96S53 571 aa11.46□□□□□ -0.57
CHD6-201ENST00000309279 C1orf167Q5SNV9 1468 aa11.46□□□□□ -0.58
CHD6-201ENST00000309279 ZBTB7CA1YPR0 619 aa11.45□□□□□ -0.58
CHD6-201ENST00000309279 BBXQ8WY36 941 aaPredicted RBP11.45□□□□□ -0.58
CHD6-201ENST00000309279 CDK19Q9BWU1 502 aa11.45□□□□□ -0.58
CHD6-201ENST00000309279 ANKARQ7Z5J8 1434 aa11.44□□□□□ -0.58
CHD6-201ENST00000309279 RGPD8O14715 1765 aaPredicted RBP11.44□□□□□ -0.58
CHD6-201ENST00000309279 TULP4Q9NRJ4 1543 aa11.44□□□□□ -0.58
CHD6-201ENST00000309279 EIF4G2P78344 907 aaKnown RBP eCLIP11.44□□□□□ -0.58
CHD6-201ENST00000309279 EVC2Q86UK5 1308 aa11.44□□□□□ -0.58
CHD6-201ENST00000309279 USP32Q8NFA0 1604 aa11.44□□□□□ -0.58
CHD6-201ENST00000309279 ROBO1Q9Y6N7 1651 aa11.43□□□□□ -0.58
CHD6-201ENST00000309279 PIP4K2BP78356 416 aa11.42□□□□□ -0.58
CHD6-201ENST00000309279 BRINP3Q76B58 766 aa11.42□□□□□ -0.58
CHD6-201ENST00000309279 PRR36Q9H6K5 1346 aa11.42□□□□□ -0.58
CHD6-201ENST00000309279 HSPA5P11021 654 aaKnown RBP11.42□□□□□ -0.58
CHD6-201ENST00000309279 PPP4R3CPQ6ZMV5 832 aa11.42□□□□□ -0.58
CHD6-201ENST00000309279 ORAI2Q96SN7 254 aa11.42□□□□□ -0.58
CHD6-201ENST00000309279 ATP7BP35670 1465 aa11.41□□□□□ -0.58
CHD6-201ENST00000309279 NUTM2FA1L443 756 aa11.41□□□□□ -0.58
CHD6-201ENST00000309279 NUDT16Q96DE0 195 aaKnown RBP11.41□□□□□ -0.58
CHD6-201ENST00000309279 CCDC61Q9Y6R9 512 aa11.41□□□□□ -0.58
CHD6-201ENST00000309279 SRPK2P78362 688 aaKnown RBP11.4□□□□□ -0.58
CHD6-201ENST00000309279 ESCO1Q5FWF5 840 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms