RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 MARCH6O60337 910 aa19.49■□□□□ 0.71
USP42-201ENST00000306177 INTS3Q68E01 1043 aaKnown RBP19.48■□□□□ 0.71
USP42-201ENST00000306177 CREBRFQ8IUR6 639 aa19.48■□□□□ 0.71
USP42-201ENST00000306177 PANK1Q8TE04 598 aa19.48■□□□□ 0.71
USP42-201ENST00000306177 CUL7Q14999 1698 aa19.48■□□□□ 0.71
USP42-201ENST00000306177 ANO2Q9NQ90 1003 aa19.48■□□□□ 0.71
USP42-201ENST00000306177 SLC12A5Q9H2X9 1139 aa19.47■□□□□ 0.71
USP42-201ENST00000306177 RNF20Q5VTR2 975 aa19.47■□□□□ 0.71
USP42-201ENST00000306177 LNPKQ9C0E8 428 aa19.47■□□□□ 0.71
USP42-201ENST00000306177 GSE1Q14687 1217 aa19.46■□□□□ 0.71
USP42-201ENST00000306177 FOXD4L6Q3SYB3 417 aaPredicted RBP19.46■□□□□ 0.71
USP42-201ENST00000306177 FOXD4L3Q6VB84 417 aaPredicted RBP19.46■□□□□ 0.71
USP42-201ENST00000306177 ARHGEF11O15085 1522 aa19.45■□□□□ 0.7
USP42-201ENST00000306177 SYTL4Q96C24 671 aaPredicted RBP19.45■□□□□ 0.7
USP42-201ENST00000306177 ERC2O15083 957 aa19.45■□□□□ 0.7
USP42-201ENST00000306177 MCTP1Q6DN14 999 aa19.45■□□□□ 0.7
USP42-201ENST00000306177 CDCA7LQ96GN5 454 aa19.45■□□□□ 0.7
USP42-201ENST00000306177 CHMP5Q9NZZ3 219 aa19.45■□□□□ 0.7
USP42-201ENST00000306177 MAGI1Q96QZ7 1491 aaPredicted RBP19.45■□□□□ 0.7
USP42-201ENST00000306177 NOC3LQ8WTT2 800 aaKnown RBP19.44■□□□□ 0.7
USP42-201ENST00000306177 NLRP2Q9NX02 1062 aa19.44■□□□□ 0.7
USP42-201ENST00000306177 GOLGA6L19H0YKK7 550 aa19.43■□□□□ 0.7
USP42-201ENST00000306177 AMOTL1Q8IY63 956 aa19.43■□□□□ 0.7
USP42-201ENST00000306177 ERBINQ96RT1 1412 aa19.43■□□□□ 0.7
USP42-201ENST00000306177 NOL10Q9BSC4 688 aaKnown RBP19.43■□□□□ 0.7
USP42-201ENST00000306177 PLB1Q6P1J6 1458 aa19.43■□□□□ 0.7
USP42-201ENST00000306177 CCDC141Q6ZP82 1450 aa19.43■□□□□ 0.7
USP42-201ENST00000306177 PRKAR2BP31323 418 aa19.42■□□□□ 0.7
USP42-201ENST00000306177 VPS53Q5VIR6 699 aa19.42■□□□□ 0.7
USP42-201ENST00000306177 BECN2A8MW95 431 aa19.42■□□□□ 0.7
USP42-201ENST00000306177 RIC3Q7Z5B4 369 aa19.42■□□□□ 0.7
USP42-201ENST00000306177 APPP05067 770 aa19.42■□□□□ 0.7
USP42-201ENST00000306177 TPM3P06753 285 aa19.42■□□□□ 0.7
USP42-201ENST00000306177 ABTB2Q8N961 1025 aa19.42■□□□□ 0.7
USP42-201ENST00000306177 GPRASP1Q5JY77 1395 aa19.42■□□□□ 0.7
USP42-201ENST00000306177 TRIM29Q14134 588 aa19.41■□□□□ 0.7
USP42-201ENST00000306177 GAS2L2Q8NHY3 880 aa19.41■□□□□ 0.7
USP42-201ENST00000306177 GRIN2AQ12879 1464 aa19.41■□□□□ 0.7
USP42-201ENST00000306177 UBTFL1P0CB47 393 aaPredicted RBP19.41■□□□□ 0.7
USP42-201ENST00000306177 CPLX1O14810 134 aa19.41■□□□□ 0.7
USP42-201ENST00000306177 ANKRD30BQ9BXX2 1392 aa19.41■□□□□ 0.7
USP42-201ENST00000306177 TRDNQ13061 729 aa19.41■□□□□ 0.7
USP42-201ENST00000306177 CDK19Q9BWU1 502 aa19.41■□□□□ 0.7
USP42-201ENST00000306177 C22orf23Q9BZE7 217 aa19.41■□□□□ 0.7
USP42-201ENST00000306177 TPD52L1Q16890 204 aaPredicted RBP19.4■□□□□ 0.7
USP42-201ENST00000306177 THEMISQ8N1K5 641 aaPredicted RBP19.4■□□□□ 0.7
USP42-201ENST00000306177 RPGRIP1LQ68CZ1 1315 aa19.4■□□□□ 0.7
USP42-201ENST00000306177 PEG3Q9GZU2 1588 aa19.4■□□□□ 0.7
USP42-201ENST00000306177 CABP1Q9NZU7 370 aa19.39■□□□□ 0.7
USP42-201ENST00000306177 VPS37DQ86XT2 251 aa19.39■□□□□ 0.69
USP42-201ENST00000306177 WDR97A6NE52 1622 aa19.39■□□□□ 0.69
USP42-201ENST00000306177 CAMSAP2Q08AD1 1489 aa19.39■□□□□ 0.69
USP42-201ENST00000306177 ESCO1Q5FWF5 840 aa19.39■□□□□ 0.69
USP42-201ENST00000306177 CDC45O75419 566 aa19.38■□□□□ 0.69
USP42-201ENST00000306177 AIMP1Q12904 312 aaKnown RBP19.38■□□□□ 0.69
USP42-201ENST00000306177 ARID3AQ99856 593 aa19.38■□□□□ 0.69
USP42-201ENST00000306177 MSH5O43196 834 aa19.38■□□□□ 0.69
USP42-201ENST00000306177 NUCB2P80303 420 aa19.38■□□□□ 0.69
USP42-201ENST00000306177 CCDC30Q5VVM6 783 aa19.38■□□□□ 0.69
USP42-201ENST00000306177 PES1O00541 588 aaKnown RBP19.37■□□□□ 0.69
USP42-201ENST00000306177 GNAI3P08754 354 aa19.37■□□□□ 0.69
USP42-201ENST00000306177 NCBP3Q53F19 620 aaKnown RBP19.37■□□□□ 0.69
USP42-201ENST00000306177 URB2Q14146 1524 aaKnown RBP19.36■□□□□ 0.69
USP42-201ENST00000306177 EXOSC9Q06265 439 aaKnown RBP19.36■□□□□ 0.69
USP42-201ENST00000306177 SMC3Q9UQE7 1217 aa19.36■□□□□ 0.69
USP42-201ENST00000306177 PROSER2Q86WR7 435 aaPredicted RBP19.36■□□□□ 0.69
USP42-201ENST00000306177 PNISRQ8TF01 805 aaKnown RBP19.36■□□□□ 0.69
USP42-201ENST00000306177 ABCC5O15440 1437 aa19.35■□□□□ 0.69
USP42-201ENST00000306177 MAP3K1Q13233 1512 aa19.35■□□□□ 0.69
USP42-201ENST00000306177 PTPN23Q9H3S7 1636 aa19.35■□□□□ 0.69
USP42-201ENST00000306177 TSR1Q2NL82 804 aaKnown RBP19.35■□□□□ 0.69
USP42-201ENST00000306177 ZNF692Q9BU19 519 aaPredicted RBP19.35■□□□□ 0.69
USP42-201ENST00000306177 PDE3AQ14432 1141 aa19.34■□□□□ 0.69
USP42-201ENST00000306177 TWISTNBQ3B726 338 aaPredicted RBP19.33■□□□□ 0.69
USP42-201ENST00000306177 PLEKHO1Q53GL0 409 aaPredicted RBP19.33■□□□□ 0.69
USP42-201ENST00000306177 NEUROD6Q96NK8 337 aa19.33■□□□□ 0.69
USP42-201ENST00000306177 RTEL1-TNFRSF6BF6WH68 1400 aa19.33■□□□□ 0.69
USP42-201ENST00000306177 NINLQ9Y2I6 1382 aa19.33■□□□□ 0.68
USP42-201ENST00000306177 VPS37CA5D8V6 355 aaPredicted RBP19.33■□□□□ 0.68
USP42-201ENST00000306177 TPM1P09493 284 aa19.33■□□□□ 0.68
USP42-201ENST00000306177 TRIM34Q9BYJ4 488 aa19.33■□□□□ 0.68
USP42-201ENST00000306177 GOLGA6L1Q8N7Z2 621 aa19.32■□□□□ 0.68
USP42-201ENST00000306177 BICD2Q8TD16 824 aa19.32■□□□□ 0.68
USP42-201ENST00000306177 TPM2P07951 284 aa19.32■□□□□ 0.68
USP42-201ENST00000306177 ERICH2A1L162 156 aa19.32■□□□□ 0.68
USP42-201ENST00000306177 NFXL1Q6ZNB6 911 aa19.32■□□□□ 0.68
USP42-201ENST00000306177 SLC26A8Q96RN1 970 aa19.32■□□□□ 0.68
USP42-201ENST00000306177 KIF14Q15058 1648 aa19.32■□□□□ 0.68
USP42-201ENST00000306177 ATAD2Q6PL18 1390 aa19.31■□□□□ 0.68
USP42-201ENST00000306177 SMG6Q86US8 1419 aaKnown RBP19.31■□□□□ 0.68
USP42-201ENST00000306177 CEP89Q96ST8 783 aa19.31■□□□□ 0.68
USP42-201ENST00000306177 CLASRPQ8N2M8 674 aaKnown RBP19.3■□□□□ 0.68
USP42-201ENST00000306177 CD109Q6YHK3 1445 aa19.3■□□□□ 0.68
USP42-201ENST00000306177 CNTROBQ8N137 903 aa19.3■□□□□ 0.68
USP42-201ENST00000306177 MEX3CQ5U5Q3 659 aaKnown RBP19.3■□□□□ 0.68
USP42-201ENST00000306177 SULT6B1Q6IMI4 303 aa19.3■□□□□ 0.68
USP42-201ENST00000306177 AMER1Q5JTC6 1135 aaPredicted RBP19.3■□□□□ 0.68
USP42-201ENST00000306177 TSR2Q969E8 191 aaKnown RBP19.3■□□□□ 0.68
USP42-201ENST00000306177 SURF6O75683 361 aaKnown RBP19.29■□□□□ 0.68
USP42-201ENST00000306177 RALYLQ86SE5 291 aaKnown RBP19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms