RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 DLC1Q96QB1 1528 aa19.2■□□□□ 0.66
VPS28-201ENST00000292510 KIAA1210Q9ULL0 1709 aa19.2■□□□□ 0.66
VPS28-201ENST00000292510 MST1RQ04912 1400 aa19.2■□□□□ 0.66
VPS28-201ENST00000292510 NBPF8Q3BBV2 869 aa19.2■□□□□ 0.66
VPS28-201ENST00000292510 CCER1Q8TC90 406 aaPredicted RBP19.2■□□□□ 0.66
VPS28-201ENST00000292510 POGKQ9P215 609 aa19.19■□□□□ 0.66
VPS28-201ENST00000292510 TRPM1Q7Z4N2 1603 aa19.16■□□□□ 0.66
VPS28-201ENST00000292510 CLSPNQ9HAW4 1339 aa19.16■□□□□ 0.66
VPS28-201ENST00000292510 CDC42BPGQ6DT37 1551 aa19.15■□□□□ 0.66
VPS28-201ENST00000292510 NUTM2FA1L443 756 aa19.15■□□□□ 0.66
VPS28-201ENST00000292510 BRINP3Q76B58 766 aa19.15■□□□□ 0.66
VPS28-201ENST00000292510 HIRIP3Q9BW71 556 aaPredicted RBP19.14■□□□□ 0.65
VPS28-201ENST00000292510 C1orf167Q5SNV9 1468 aa19.14■□□□□ 0.65
VPS28-201ENST00000292510 ARHGEF28Q8N1W1 1705 aaKnown RBP19.14■□□□□ 0.65
VPS28-201ENST00000292510 MINK1Q8N4C8 1332 aaPredicted RBP19.13■□□□□ 0.65
VPS28-201ENST00000292510 ROCK2O75116 1388 aaKnown RBP19.13■□□□□ 0.65
VPS28-201ENST00000292510 ORAI2Q96SN7 254 aa19.12■□□□□ 0.65
VPS28-201ENST00000292510 DDX17Q92841 729 aaKnown RBP19.1■□□□□ 0.65
VPS28-201ENST00000292510 FMN2Q9NZ56 1722 aa19.08■□□□□ 0.65
VPS28-201ENST00000292510 ESCO1Q5FWF5 840 aa19.08■□□□□ 0.64
VPS28-201ENST00000292510 PHLPP1O60346 1717 aa19.08■□□□□ 0.64
VPS28-201ENST00000292510 ADGRB2O60241 1585 aa19.07■□□□□ 0.64
VPS28-201ENST00000292510 RALGAPBQ86X10 1494 aa19.07■□□□□ 0.64
VPS28-201ENST00000292510 AHDC1Q5TGY3 1603 aaPredicted RBP19.07■□□□□ 0.64
VPS28-201ENST00000292510 GPRASP1Q5JY77 1395 aa19.06■□□□□ 0.64
VPS28-201ENST00000292510 CENPJQ9HC77 1338 aaPredicted RBP19.05■□□□□ 0.64
VPS28-201ENST00000292510 COL16A1Q07092 1604 aaPredicted RBP19.05■□□□□ 0.64
VPS28-201ENST00000292510 CARD11Q9BXL7 1154 aa19.05■□□□□ 0.64
VPS28-201ENST00000292510 WASLO00401 505 aaPredicted RBP19.04■□□□□ 0.64
VPS28-201ENST00000292510 NHSL1Q5SYE7 1610 aa19.03■□□□□ 0.64
VPS28-201ENST00000292510 TIMELESSQ9UNS1 1208 aa19.03■□□□□ 0.64
VPS28-201ENST00000292510 PRR36Q9H6K5 1346 aa19.01■□□□□ 0.63
VPS28-201ENST00000292510 USP32Q8NFA0 1604 aa19.01■□□□□ 0.63
VPS28-201ENST00000292510 RGPD8O14715 1765 aaPredicted RBP19.01■□□□□ 0.63
VPS28-201ENST00000292510 FOXO3O43524 673 aa19■□□□□ 0.63
VPS28-201ENST00000292510 CDK19Q9BWU1 502 aa19■□□□□ 0.63
VPS28-201ENST00000292510 QRICH2Q9H0J4 1663 aa19■□□□□ 0.63
VPS28-201ENST00000292510 TULP4Q9NRJ4 1543 aa19■□□□□ 0.63
VPS28-201ENST00000292510 ANKARQ7Z5J8 1434 aa19■□□□□ 0.63
VPS28-201ENST00000292510 EIF3AQ14152 1382 aaKnown RBP18.99■□□□□ 0.63
VPS28-201ENST00000292510 XPCQ01831 940 aaPredicted RBP18.99■□□□□ 0.63
VPS28-201ENST00000292510 PHF8Q9UPP1 1060 aa18.98■□□□□ 0.63
VPS28-201ENST00000292510 JCADQ9P266 1359 aa18.97■□□□□ 0.63
VPS28-201ENST00000292510 PMFBP1Q8TBY8 1022 aa18.97■□□□□ 0.63
VPS28-201ENST00000292510 SOS2Q07890 1332 aaPredicted RBP18.97■□□□□ 0.63
VPS28-201ENST00000292510 NPHP3Q7Z494 1330 aa18.97■□□□□ 0.63
VPS28-201ENST00000292510 NUDT16Q96DE0 195 aaKnown RBP18.96■□□□□ 0.63
VPS28-201ENST00000292510 ATP7BP35670 1465 aa18.96■□□□□ 0.63
VPS28-201ENST00000292510 CABP2Q9NPB3 220 aa18.95■□□□□ 0.62
VPS28-201ENST00000292510 KIF1AQ12756 1690 aa18.95■□□□□ 0.62
VPS28-201ENST00000292510 SRPK2P78362 688 aaKnown RBP18.94■□□□□ 0.62
VPS28-201ENST00000292510 LRRC59Q96AG4 307 aaKnown RBP18.94■□□□□ 0.62
VPS28-201ENST00000292510 PXDNQ92626 1479 aa18.94■□□□□ 0.62
VPS28-201ENST00000292510 MED1Q15648 1581 aaPredicted RBP18.93■□□□□ 0.62
VPS28-201ENST00000292510 KRT28Q7Z3Y7 464 aa18.91■□□□□ 0.62
VPS28-201ENST00000292510 SHPRHQ149N8 1683 aa18.91■□□□□ 0.62
VPS28-201ENST00000292510 PNPLA6Q8IY17 1366 aa18.91■□□□□ 0.62
VPS28-201ENST00000292510 ST20-MTHFSA0A0A6YYL1 179 aa18.9■□□□□ 0.62
VPS28-201ENST00000292510 EVC2Q86UK5 1308 aa18.9■□□□□ 0.62
VPS28-201ENST00000292510 CCDC61Q9Y6R9 512 aa18.89■□□□□ 0.61
VPS28-201ENST00000292510 USP47Q96K76 1375 aa18.89■□□□□ 0.61
VPS28-201ENST00000292510 DISP3Q9P2K9 1392 aa18.89■□□□□ 0.61
VPS28-201ENST00000292510 NUTM2BA6NNL0 878 aaPredicted RBP18.88■□□□□ 0.61
VPS28-201ENST00000292510 NUTM2EB1AL46 878 aaPredicted RBP18.88■□□□□ 0.61
VPS28-201ENST00000292510 PSME1Q06323 249 aa18.88■□□□□ 0.61
VPS28-201ENST00000292510 NUTM2AQ8IVF1 878 aaPredicted RBP18.88■□□□□ 0.61
VPS28-201ENST00000292510 NGDNQ8NEJ9 315 aaKnown RBP18.88■□□□□ 0.61
VPS28-201ENST00000292510 SBNO2Q9Y2G9 1366 aa18.88■□□□□ 0.61
VPS28-201ENST00000292510 LRP6O75581 1613 aa18.88■□□□□ 0.61
VPS28-201ENST00000292510 TOPAZ1Q8N9V7 1692 aa18.88■□□□□ 0.61
VPS28-201ENST00000292510 ITSN1Q15811 1721 aa18.87■□□□□ 0.61
VPS28-201ENST00000292510 SPATA31A6Q5VVP1 1343 aa18.87■□□□□ 0.61
VPS28-201ENST00000292510 PPIP5K1Q6PFW1 1433 aa18.86■□□□□ 0.61
VPS28-201ENST00000292510 TESK2Q96S53 571 aa18.86■□□□□ 0.61
VPS28-201ENST00000292510 ACEP12821 1306 aa18.85■□□□□ 0.61
VPS28-201ENST00000292510 SPATA31A3Q5VYP0 1347 aa18.85■□□□□ 0.61
VPS28-201ENST00000292510 PLEKHG3A1L390 1219 aa18.84■□□□□ 0.61
VPS28-201ENST00000292510 CABP1Q9NZU7 370 aa18.84■□□□□ 0.61
VPS28-201ENST00000292510 TNS3Q68CZ2 1445 aa18.83■□□□□ 0.61
VPS28-201ENST00000292510 LMOD2Q6P5Q4 547 aa18.83■□□□□ 0.6
VPS28-201ENST00000292510 SBNO1A3KN83 1393 aa18.82■□□□□ 0.6
VPS28-201ENST00000292510 POLR3AO14802 1390 aaPredicted RBP18.82■□□□□ 0.6
VPS28-201ENST00000292510 PHF23Q9BUL5 403 aaPredicted RBP18.82■□□□□ 0.6
VPS28-201ENST00000292510 TRPM3Q9HCF6 1732 aaPredicted RBP18.81■□□□□ 0.6
VPS28-201ENST00000292510 PLEKHG5O94827 1062 aa18.81■□□□□ 0.6
VPS28-201ENST00000292510 MEX3CQ5U5Q3 659 aaKnown RBP18.81■□□□□ 0.6
VPS28-201ENST00000292510 COL22A1Q8NFW1 1626 aaPredicted RBP18.81■□□□□ 0.6
VPS28-201ENST00000292510 PAK3O75914 559 aaPredicted RBP18.8■□□□□ 0.6
VPS28-201ENST00000292510 ATAD2Q6PL18 1390 aa18.8■□□□□ 0.6
VPS28-201ENST00000292510 ADAMTS2O95450 1211 aa18.79■□□□□ 0.6
VPS28-201ENST00000292510 CABLES1Q8TDN4 633 aa18.78■□□□□ 0.6
VPS28-201ENST00000292510 RGS17Q9UGC6 210 aaPredicted RBP18.77■□□□□ 0.6
VPS28-201ENST00000292510 ARHGEF10O15013 1369 aa18.76■□□□□ 0.59
VPS28-201ENST00000292510 ALS2Q96Q42 1657 aa18.76■□□□□ 0.59
VPS28-201ENST00000292510 HSPA5P11021 654 aaKnown RBP18.75■□□□□ 0.59
VPS28-201ENST00000292510 TMF1P82094 1093 aa18.75■□□□□ 0.59
VPS28-201ENST00000292510 TMC1Q8TDI8 760 aa18.75■□□□□ 0.59
VPS28-201ENST00000292510 EIF4G2P78344 907 aaKnown RBP eCLIP18.74■□□□□ 0.59
VPS28-201ENST00000292510 NUTM2GQ5VZR2 741 aa18.74■□□□□ 0.59
VPS28-201ENST00000292510 C8orf37Q96NL8 207 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms