RNA–Protein interactions for RNA: ENST00000268717.9

COPS3-201, Transcript of COP9 signalosome subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPS3, Length 1,641 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-201ENST00000268717 SCAF1Q9H7N4 1312 aaKnown RBP21.16■□□□□ 0.98
COPS3-201ENST00000268717 AMOTL2Q9Y2J4 779 aa21.16■□□□□ 0.98
COPS3-201ENST00000268717 DISP3Q9P2K9 1392 aa21.16■□□□□ 0.98
COPS3-201ENST00000268717 CDCA8Q53HL2 280 aa21.15■□□□□ 0.98
COPS3-201ENST00000268717 NCOA3Q9Y6Q9 1424 aa21.14■□□□□ 0.97
COPS3-201ENST00000268717 PRKRIP1Q9H875 184 aaPredicted RBP21.13■□□□□ 0.97
COPS3-201ENST00000268717 MSH6P52701 1360 aa21.12■□□□□ 0.97
COPS3-201ENST00000268717 KTN1Q86UP2 1357 aaKnown RBP21.1■□□□□ 0.97
COPS3-201ENST00000268717 POLR3GLQ9BT43 218 aa21.09■□□□□ 0.97
COPS3-201ENST00000268717 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.08■□□□□ 0.97
COPS3-201ENST00000268717 CENPJQ9HC77 1338 aaPredicted RBP21.07■□□□□ 0.96
COPS3-201ENST00000268717 HSPA1LP34931 641 aa21.07■□□□□ 0.96
COPS3-201ENST00000268717 C14orf37Q86TY3 774 aa21.06■□□□□ 0.96
COPS3-201ENST00000268717 YTHDC1Q96MU7 727 aaKnown RBP21.06■□□□□ 0.96
COPS3-201ENST00000268717 PTCH1Q13635 1447 aa21.05■□□□□ 0.96
COPS3-201ENST00000268717 FAM135BQ49AJ0 1406 aa21.05■□□□□ 0.96
COPS3-201ENST00000268717 ASXL1Q8IXJ9 1541 aa21.04■□□□□ 0.96
COPS3-201ENST00000268717 C19orf44Q9H6X5 657 aa21.04■□□□□ 0.96
COPS3-201ENST00000268717 ROBO1Q9Y6N7 1651 aa21.04■□□□□ 0.96
COPS3-201ENST00000268717 TMEM132EQ6IEE7 984 aa21.03■□□□□ 0.96
COPS3-201ENST00000268717 SLAIN2Q9P270 581 aa21.01■□□□□ 0.95
COPS3-201ENST00000268717 NALCNQ8IZF0 1738 aa21.01■□□□□ 0.95
COPS3-201ENST00000268717 DCCP43146 1447 aa21■□□□□ 0.95
COPS3-201ENST00000268717 ROBO2Q9HCK4 1378 aa21■□□□□ 0.95
COPS3-201ENST00000268717 CADPS2Q86UW7 1296 aa21■□□□□ 0.95
COPS3-201ENST00000268717 PUS7Q96PZ0 661 aaKnown RBP21■□□□□ 0.95
COPS3-201ENST00000268717 ARHGEF28Q8N1W1 1705 aaKnown RBP21■□□□□ 0.95
COPS3-201ENST00000268717 PER1O15534 1290 aaPredicted RBP21■□□□□ 0.95
COPS3-201ENST00000268717 TRAK1Q9UPV9 953 aa21■□□□□ 0.95
COPS3-201ENST00000268717 ADGRL3Q9HAR2 1447 aa20.99■□□□□ 0.95
COPS3-201ENST00000268717 RALBP1Q15311 655 aa20.99■□□□□ 0.95
COPS3-201ENST00000268717 YTHDC2Q9H6S0 1430 aaKnown RBP20.98■□□□□ 0.95
COPS3-201ENST00000268717 KNDC1Q76NI1 1749 aa20.98■□□□□ 0.95
COPS3-201ENST00000268717 QRICH2Q9H0J4 1663 aa20.98■□□□□ 0.95
COPS3-201ENST00000268717 ATF3P18847 181 aa20.98■□□□□ 0.95
COPS3-201ENST00000268717 DLC1Q96QB1 1528 aa20.97■□□□□ 0.95
COPS3-201ENST00000268717 TECPR2O15040 1411 aa20.96■□□□□ 0.95
COPS3-201ENST00000268717 LRPPRCP42704 1394 aaKnown RBP20.96■□□□□ 0.95
COPS3-201ENST00000268717 MYOM1P52179 1685 aa20.95■□□□□ 0.94
COPS3-201ENST00000268717 PANK3Q9H999 370 aa20.95■□□□□ 0.94
COPS3-201ENST00000268717 PARD3Q8TEW0 1356 aa20.94■□□□□ 0.94
COPS3-201ENST00000268717 ABCC11Q96J66 1382 aa20.94■□□□□ 0.94
COPS3-201ENST00000268717 NPC1L1Q9UHC9 1359 aa20.92■□□□□ 0.94
COPS3-201ENST00000268717 STK26Q9P289 416 aa20.92■□□□□ 0.94
COPS3-201ENST00000268717 MST1RQ04912 1400 aa20.91■□□□□ 0.94
COPS3-201ENST00000268717 PHLPP1O60346 1717 aa20.91■□□□□ 0.94
COPS3-201ENST00000268717 EVC2Q86UK5 1308 aa20.91■□□□□ 0.94
COPS3-201ENST00000268717 MYBBP1AQ9BQG0 1328 aaKnown RBP20.91■□□□□ 0.94
COPS3-201ENST00000268717 BRD4O60885 1362 aaPredicted RBP20.89■□□□□ 0.93
COPS3-201ENST00000268717 TULP4Q9NRJ4 1543 aa20.89■□□□□ 0.93
COPS3-201ENST00000268717 MRS2Q9HD23 443 aa20.89■□□□□ 0.93
COPS3-201ENST00000268717 SIRT1Q96EB6 747 aa20.87■□□□□ 0.93
COPS3-201ENST00000268717 AHDC1Q5TGY3 1603 aaPredicted RBP20.87■□□□□ 0.93
COPS3-201ENST00000268717 NINLQ9Y2I6 1382 aa20.87■□□□□ 0.93
COPS3-201ENST00000268717 CDC42BPGQ6DT37 1551 aa20.87■□□□□ 0.93
COPS3-201ENST00000268717 BRINP3Q76B58 766 aa20.86■□□□□ 0.93
COPS3-201ENST00000268717 WAPLQ7Z5K2 1190 aa20.86■□□□□ 0.93
COPS3-201ENST00000268717 KNSTRNQ9Y448 316 aa20.86■□□□□ 0.93
COPS3-201ENST00000268717 PLEKHH1Q9ULM0 1364 aa20.86■□□□□ 0.93
COPS3-201ENST00000268717 COL16A1Q07092 1604 aaPredicted RBP20.86■□□□□ 0.93
COPS3-201ENST00000268717 MED1Q15648 1581 aaPredicted RBP20.85■□□□□ 0.93
COPS3-201ENST00000268717 CCDC184Q52MB2 194 aa20.84■□□□□ 0.93
COPS3-201ENST00000268717 C1orf167Q5SNV9 1468 aa20.84■□□□□ 0.93
COPS3-201ENST00000268717 AMER1Q5JTC6 1135 aaPredicted RBP20.83■□□□□ 0.93
COPS3-201ENST00000268717 NLRP13Q86W25 1043 aa20.83■□□□□ 0.93
COPS3-201ENST00000268717 PRAM1Q96QH2 718 aa20.83■□□□□ 0.93
COPS3-201ENST00000268717 NHSL1Q5SYE7 1610 aa20.83■□□□□ 0.92
COPS3-201ENST00000268717 POGKQ9P215 609 aa20.82■□□□□ 0.92
COPS3-201ENST00000268717 ATAD2Q6PL18 1390 aa20.82■□□□□ 0.92
COPS3-201ENST00000268717 CNGB1Q14028 1251 aaPredicted RBP20.81■□□□□ 0.92
COPS3-201ENST00000268717 FMN2Q9NZ56 1722 aa20.78■□□□□ 0.92
COPS3-201ENST00000268717 USP32Q8NFA0 1604 aa20.78■□□□□ 0.92
COPS3-201ENST00000268717 SAFB2Q14151 953 aaKnown RBP eCLIP20.78■□□□□ 0.92
COPS3-201ENST00000268717 TMC1Q8TDI8 760 aa20.78■□□□□ 0.92
COPS3-201ENST00000268717 ANKRD36BQ8N2N9 1353 aa20.77■□□□□ 0.92
COPS3-201ENST00000268717 JCADQ9P266 1359 aa20.76■□□□□ 0.91
COPS3-201ENST00000268717 ORAI2Q96SN7 254 aa20.76■□□□□ 0.91
COPS3-201ENST00000268717 CC2D1BQ5T0F9 858 aaKnown RBP20.75■□□□□ 0.91
COPS3-201ENST00000268717 PNISRQ8TF01 805 aaKnown RBP20.75■□□□□ 0.91
COPS3-201ENST00000268717 INSRP06213 1382 aa20.75■□□□□ 0.91
COPS3-201ENST00000268717 SHPRHQ149N8 1683 aa20.75■□□□□ 0.91
COPS3-201ENST00000268717 CARD14Q9BXL6 1004 aa20.74■□□□□ 0.91
COPS3-201ENST00000268717 ADGRB2O60241 1585 aa20.73■□□□□ 0.91
COPS3-201ENST00000268717 DDX17Q92841 729 aaKnown RBP20.73■□□□□ 0.91
COPS3-201ENST00000268717 MINK1Q8N4C8 1332 aaPredicted RBP20.72■□□□□ 0.91
COPS3-201ENST00000268717 RGPD8O14715 1765 aaPredicted RBP20.72■□□□□ 0.91
COPS3-201ENST00000268717 FAM9BQ8IZU0 186 aa20.72■□□□□ 0.91
COPS3-201ENST00000268717 NSD3Q9BZ95 1437 aa20.72■□□□□ 0.91
COPS3-201ENST00000268717 SRPK2P78362 688 aaKnown RBP20.71■□□□□ 0.91
COPS3-201ENST00000268717 HNRNPUQ00839 825 aaKnown RBP eCLIP20.71■□□□□ 0.91
COPS3-201ENST00000268717 SLC12A5Q9H2X9 1139 aa20.71■□□□□ 0.91
COPS3-201ENST00000268717 CABP2Q9NPB3 220 aa20.71■□□□□ 0.91
COPS3-201ENST00000268717 NSD2O96028 1365 aa20.71■□□□□ 0.91
COPS3-201ENST00000268717 NUTM2FA1L443 756 aa20.71■□□□□ 0.91
COPS3-201ENST00000268717 ESCO1Q5FWF5 840 aa20.71■□□□□ 0.91
COPS3-201ENST00000268717 CDK19Q9BWU1 502 aa20.69■□□□□ 0.9
COPS3-201ENST00000268717 LRRC59Q96AG4 307 aaKnown RBP20.68■□□□□ 0.9
COPS3-201ENST00000268717 ZBED9Q6R2W3 1325 aa20.68■□□□□ 0.9
COPS3-201ENST00000268717 KIF1AQ12756 1690 aa20.68■□□□□ 0.9
COPS3-201ENST00000268717 PHF23Q9BUL5 403 aaPredicted RBP20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms