RNA–Protein interactions for RNA: ENST00000249806.10

CLN6-201, Transcript of CLN6, transmembrane ER protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN6, Length 2,243 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-201ENST00000249806 PPP6R1Q9UPN7 881 aa28.66■■■□□ 2.18
CLN6-201ENST00000249806 PLIN1O60240 522 aa28.65■■■□□ 2.18
CLN6-201ENST00000249806 PUS7Q96PZ0 661 aaKnown RBP28.65■■■□□ 2.18
CLN6-201ENST00000249806 APAF1O14727 1248 aa28.65■■■□□ 2.18
CLN6-201ENST00000249806 DUSP27Q5VZP5 1158 aa28.62■■■□□ 2.17
CLN6-201ENST00000249806 GOLGA2Q08379 1002 aa28.62■■■□□ 2.17
CLN6-201ENST00000249806 POLR3AO14802 1390 aaPredicted RBP28.61■■■□□ 2.17
CLN6-201ENST00000249806 KIF13AQ9H1H9 1805 aa28.61■■■□□ 2.17
CLN6-201ENST00000249806 CGNL1Q0VF96 1302 aa28.61■■■□□ 2.17
CLN6-201ENST00000249806 PRAM1Q96QH2 718 aa28.61■■■□□ 2.17
CLN6-201ENST00000249806 ANKRD36BQ8N2N9 1353 aa28.59■■■□□ 2.17
CLN6-201ENST00000249806 PTPRMP28827 1452 aa28.59■■■□□ 2.17
CLN6-201ENST00000249806 YTHDC2Q9H6S0 1430 aaKnown RBP28.59■■■□□ 2.17
CLN6-201ENST00000249806 SRPK2P78362 688 aaKnown RBP28.59■■■□□ 2.17
CLN6-201ENST00000249806 MINK1Q8N4C8 1332 aaPredicted RBP28.59■■■□□ 2.17
CLN6-201ENST00000249806 ALKQ9UM73 1620 aa28.57■■■□□ 2.16
CLN6-201ENST00000249806 POGKQ9P215 609 aa28.57■■■□□ 2.16
CLN6-201ENST00000249806 USP32Q8NFA0 1604 aa28.56■■■□□ 2.16
CLN6-201ENST00000249806 SLFN5Q08AF3 891 aa28.55■■■□□ 2.16
CLN6-201ENST00000249806 SPINK5Q9NQ38 1064 aaPredicted RBP28.55■■■□□ 2.16
CLN6-201ENST00000249806 MTHFSP49914 203 aa28.54■■■□□ 2.16
CLN6-201ENST00000249806 A2ML1A8K2U0 1454 aa28.54■■■□□ 2.16
CLN6-201ENST00000249806 SPATA31D1Q6ZQQ2 1576 aa28.53■■■□□ 2.16
CLN6-201ENST00000249806 A0A1W2PP64 1363 aa28.51■■■□□ 2.15
CLN6-201ENST00000249806 ARHGEF40Q8TER5 1519 aa28.51■■■□□ 2.15
CLN6-201ENST00000249806 SHPRHQ149N8 1683 aa28.51■■■□□ 2.15
CLN6-201ENST00000249806 TRMT2AQ8IZ69 625 aaKnown RBP28.5■■■□□ 2.15
CLN6-201ENST00000249806 CRBNQ96SW2 442 aa28.49■■■□□ 2.15
CLN6-201ENST00000249806 DMRT2Q9Y5R5 561 aa28.49■■■□□ 2.15
CLN6-201ENST00000249806 C20orf194Q5TEA3 1177 aa28.48■■■□□ 2.15
CLN6-201ENST00000249806 RIMS2Q9UQ26 1411 aa28.48■■■□□ 2.15
CLN6-201ENST00000249806 ESF1Q9H501 851 aaKnown RBP28.47■■■□□ 2.15
CLN6-201ENST00000249806 ZMYM3Q14202 1370 aa28.46■■■□□ 2.15
CLN6-201ENST00000249806 CDK19Q9BWU1 502 aa28.45■■■□□ 2.15
CLN6-201ENST00000249806 NSD2O96028 1365 aa28.45■■■□□ 2.14
CLN6-201ENST00000249806 NINLQ9Y2I6 1382 aa28.45■■■□□ 2.14
CLN6-201ENST00000249806 ATAD2Q6PL18 1390 aa28.44■■■□□ 2.14
CLN6-201ENST00000249806 WAPLQ7Z5K2 1190 aa28.44■■■□□ 2.14
CLN6-201ENST00000249806 GGNBP2Q9H3C7 697 aa28.43■■■□□ 2.14
CLN6-201ENST00000249806 ABCC11Q96J66 1382 aa28.43■■■□□ 2.14
CLN6-201ENST00000249806 CFAP53Q96M91 514 aa28.42■■■□□ 2.14
CLN6-201ENST00000249806 FANCIQ9NVI1 1328 aa28.42■■■□□ 2.14
CLN6-201ENST00000249806 NEUROD2Q15784 382 aa28.42■■■□□ 2.14
CLN6-201ENST00000249806 WWC1Q8IX03 1113 aa28.42■■■□□ 2.14
CLN6-201ENST00000249806 NGEFQ8N5V2 710 aa28.42■■■□□ 2.14
CLN6-201ENST00000249806 E9PSI1 815 aa28.41■■■□□ 2.14
CLN6-201ENST00000249806 RUNDC1Q96C34 613 aa28.41■■■□□ 2.14
CLN6-201ENST00000249806 TERF2IPQ9NYB0 399 aa28.41■■■□□ 2.14
CLN6-201ENST00000249806 RRP7AQ9Y3A4 280 aaKnown RBP28.41■■■□□ 2.14
CLN6-201ENST00000249806 CD163L1Q9NR16 1453 aa28.4■■■□□ 2.14
CLN6-201ENST00000249806 CABP1Q9NZU7 370 aa28.39■■■□□ 2.14
CLN6-201ENST00000249806 NKTRP30414 1462 aaKnown RBP28.39■■■□□ 2.13
CLN6-201ENST00000249806 FYB1O15117 783 aa28.38■■■□□ 2.13
CLN6-201ENST00000249806 TCP11L2Q8N4U5 519 aa28.38■■■□□ 2.13
CLN6-201ENST00000249806 MSH5O43196 834 aa28.38■■■□□ 2.13
CLN6-201ENST00000249806 SETD1AO15047 1707 aaKnown RBP28.37■■■□□ 2.13
CLN6-201ENST00000249806 BCAR3O75815 825 aa28.33■■■□□ 2.13
CLN6-201ENST00000249806 U2AF1L5P0DN76 240 aaPredicted RBP28.33■■■□□ 2.13
CLN6-201ENST00000249806 U2AF1Q01081 240 aaKnown RBP eCLIP28.33■■■□□ 2.13
CLN6-201ENST00000249806 HDGFL2Q7Z4V5 671 aaPredicted RBP28.33■■■□□ 2.13
CLN6-201ENST00000249806 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.32■■■□□ 2.12
CLN6-201ENST00000249806 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.32■■■□□ 2.12
CLN6-201ENST00000249806 DLC1Q96QB1 1528 aa28.32■■■□□ 2.12
CLN6-201ENST00000249806 NRXN3Q9Y4C0 1643 aa28.32■■■□□ 2.12
CLN6-201ENST00000249806 METP08581 1390 aa28.32■■■□□ 2.12
CLN6-201ENST00000249806 IQSEC2Q5JU85 1478 aa28.31■■■□□ 2.12
CLN6-201ENST00000249806 NLRP1Q9C000 1473 aa28.3■■■□□ 2.12
CLN6-201ENST00000249806 PHF23Q9BUL5 403 aaPredicted RBP28.28■■■□□ 2.12
CLN6-201ENST00000249806 TXNDC2Q86VQ3 553 aa28.28■■■□□ 2.12
CLN6-201ENST00000249806 TNRQ92752 1358 aa28.28■■■□□ 2.12
CLN6-201ENST00000249806 ANP32EQ9BTT0 268 aa28.27■■■□□ 2.12
CLN6-201ENST00000249806 ANKRD26Q9UPS8 1709 aa28.25■■■□□ 2.11
CLN6-201ENST00000249806 U2SURPO15042 1029 aaKnown RBP28.24■■■□□ 2.11
CLN6-201ENST00000249806 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.24■■■□□ 2.11
CLN6-201ENST00000249806 MED14O60244 1454 aa28.24■■■□□ 2.11
CLN6-201ENST00000249806 HDGFP51858 240 aaKnown RBP28.23■■■□□ 2.11
CLN6-201ENST00000249806 SKAP1Q86WV1 359 aa28.22■■■□□ 2.11
CLN6-201ENST00000249806 WDR63Q8IWG1 891 aa28.22■■■□□ 2.11
CLN6-201ENST00000249806 WASLO00401 505 aaPredicted RBP28.22■■■□□ 2.11
CLN6-201ENST00000249806 CCDC27Q2M243 656 aa28.21■■■□□ 2.11
CLN6-201ENST00000249806 TCERG1O14776 1098 aaKnown RBP28.2■■■□□ 2.11
CLN6-201ENST00000249806 COL3A1P02461 1466 aaPredicted RBP28.2■■■□□ 2.11
CLN6-201ENST00000249806 FBLN1P23142 703 aa28.2■■■□□ 2.1
CLN6-201ENST00000249806 TMEM2Q9UHN6 1383 aa28.19■■■□□ 2.1
CLN6-201ENST00000249806 KIF20BQ96Q89 1820 aa28.19■■■□□ 2.1
CLN6-201ENST00000249806 CEBPAP49715 358 aaPredicted RBP28.18■■■□□ 2.1
CLN6-201ENST00000249806 PLEKHF1Q96S99 279 aa28.18■■■□□ 2.1
CLN6-201ENST00000249806 UBR1Q8IWV7 1749 aa28.17■■■□□ 2.1
CLN6-201ENST00000249806 KDM2BQ8NHM5 1336 aa28.17■■■□□ 2.1
CLN6-201ENST00000249806 NCKAP5LQ9HCH0 1330 aa28.17■■■□□ 2.1
CLN6-201ENST00000249806 ATP7BP35670 1465 aa28.16■■■□□ 2.1
CLN6-201ENST00000249806 PPIP5K1Q6PFW1 1433 aa28.15■■■□□ 2.1
CLN6-201ENST00000249806 ADGRB2O60241 1585 aa28.14■■■□□ 2.1
CLN6-201ENST00000249806 DIAPH1O60610 1272 aaKnown RBP28.14■■■□□ 2.09
CLN6-201ENST00000249806 NUDT16Q96DE0 195 aaKnown RBP28.13■■■□□ 2.09
CLN6-201ENST00000249806 PNPLA6Q8IY17 1366 aa28.12■■■□□ 2.09
CLN6-201ENST00000249806 PPM1GO15355 546 aaPredicted RBP28.12■■■□□ 2.09
CLN6-201ENST00000249806 NCBP3Q53F19 620 aaKnown RBP28.12■■■□□ 2.09
CLN6-201ENST00000249806 LTKP29376 864 aa28.12■■■□□ 2.09
CLN6-201ENST00000249806 RARSP54136 660 aaKnown RBP28.12■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms