RNA–Protein interactions for RNA: ENST00000248958.4

SDF2L1-201, Transcript of stromal cell derived factor 2 like 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDF2L1, Length 865 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2L1-201ENST00000248958 L3MBTL2Q969R5 705 aa35.11■■■■□ 3.21
SDF2L1-201ENST00000248958 PLEKHH1Q9ULM0 1364 aa35.1■■■■□ 3.21
SDF2L1-201ENST00000248958 AHDC1Q5TGY3 1603 aaPredicted RBP35.08■■■■□ 3.21
SDF2L1-201ENST00000248958 BRINP3Q76B58 766 aa35.08■■■■□ 3.21
SDF2L1-201ENST00000248958 PCGF6Q9BYE7 350 aa35.07■■■■□ 3.2
SDF2L1-201ENST00000248958 C1orf167Q5SNV9 1468 aa35.07■■■■□ 3.2
SDF2L1-201ENST00000248958 PRAM1Q96QH2 718 aa35.05■■■■□ 3.2
SDF2L1-201ENST00000248958 POGKQ9P215 609 aa35.05■■■■□ 3.2
SDF2L1-201ENST00000248958 MED1Q15648 1581 aaPredicted RBP35.04■■■■□ 3.2
SDF2L1-201ENST00000248958 TRAK1Q9UPV9 953 aa35.04■■■■□ 3.2
SDF2L1-201ENST00000248958 COL16A1Q07092 1604 aaPredicted RBP35■■■■□ 3.19
SDF2L1-201ENST00000248958 NHSL1Q5SYE7 1610 aa35■■■■□ 3.19
SDF2L1-201ENST00000248958 ARHGEF28Q8N1W1 1705 aaKnown RBP34.98■■■■□ 3.19
SDF2L1-201ENST00000248958 FMN2Q9NZ56 1722 aa34.98■■■■□ 3.19
SDF2L1-201ENST00000248958 TONSLQ96HA7 1378 aa34.97■■■■□ 3.19
SDF2L1-201ENST00000248958 ADGRB2O60241 1585 aa34.96■■■■□ 3.19
SDF2L1-201ENST00000248958 SAFB2Q14151 953 aaKnown RBP eCLIP34.94■■■■□ 3.18
SDF2L1-201ENST00000248958 TRPM1Q7Z4N2 1603 aa34.93■■■■□ 3.18
SDF2L1-201ENST00000248958 JCADQ9P266 1359 aa34.93■■■■□ 3.18
SDF2L1-201ENST00000248958 NBPF1Q3BBV0 1214 aa34.92■■■■□ 3.18
SDF2L1-201ENST00000248958 ORAI2Q96SN7 254 aa34.91■■■■□ 3.18
SDF2L1-201ENST00000248958 ESCO1Q5FWF5 840 aa34.89■■■■□ 3.18
SDF2L1-201ENST00000248958 CLSPNQ9HAW4 1339 aa34.87■■■■□ 3.17
SDF2L1-201ENST00000248958 EIF3AQ14152 1382 aaKnown RBP34.86■■■■□ 3.17
SDF2L1-201ENST00000248958 SHPRHQ149N8 1683 aa34.86■■■■□ 3.17
SDF2L1-201ENST00000248958 LRRC59Q96AG4 307 aaKnown RBP34.85■■■■□ 3.17
SDF2L1-201ENST00000248958 NUTM2FA1L443 756 aa34.84■■■■□ 3.17
SDF2L1-201ENST00000248958 KIF1AQ12756 1690 aa34.84■■■■□ 3.17
SDF2L1-201ENST00000248958 MINK1Q8N4C8 1332 aaPredicted RBP34.83■■■■□ 3.17
SDF2L1-201ENST00000248958 ANKARQ7Z5J8 1434 aa34.82■■■■□ 3.17
SDF2L1-201ENST00000248958 RGPD8O14715 1765 aaPredicted RBP34.82■■■■□ 3.16
SDF2L1-201ENST00000248958 NPHP3Q7Z494 1330 aa34.81■■■■□ 3.16
SDF2L1-201ENST00000248958 ROCK2O75116 1388 aaKnown RBP34.81■■■■□ 3.16
SDF2L1-201ENST00000248958 SPATA31A6Q5VVP1 1343 aa34.81■■■■□ 3.16
SDF2L1-201ENST00000248958 SOS2Q07890 1332 aaPredicted RBP34.8■■■■□ 3.16
SDF2L1-201ENST00000248958 WASLO00401 505 aaPredicted RBP34.79■■■■□ 3.16
SDF2L1-201ENST00000248958 DDX17Q92841 729 aaKnown RBP34.79■■■■□ 3.16
SDF2L1-201ENST00000248958 HIRIP3Q9BW71 556 aaPredicted RBP34.79■■■■□ 3.16
SDF2L1-201ENST00000248958 NBPF8Q3BBV2 869 aa34.78■■■■□ 3.16
SDF2L1-201ENST00000248958 TULP4Q9NRJ4 1543 aa34.76■■■■□ 3.16
SDF2L1-201ENST00000248958 USP32Q8NFA0 1604 aa34.75■■■■□ 3.15
SDF2L1-201ENST00000248958 CENPJQ9HC77 1338 aaPredicted RBP34.75■■■■□ 3.15
SDF2L1-201ENST00000248958 GPRASP1Q5JY77 1395 aa34.74■■■■□ 3.15
SDF2L1-201ENST00000248958 FOXO3O43524 673 aa34.73■■■■□ 3.15
SDF2L1-201ENST00000248958 PHF23Q9BUL5 403 aaPredicted RBP34.73■■■■□ 3.15
SDF2L1-201ENST00000248958 PHF8Q9UPP1 1060 aa34.73■■■■□ 3.15
SDF2L1-201ENST00000248958 TIMELESSQ9UNS1 1208 aa34.71■■■■□ 3.15
SDF2L1-201ENST00000248958 QRICH2Q9H0J4 1663 aa34.7■■■■□ 3.15
SDF2L1-201ENST00000248958 RALGAPBQ86X10 1494 aa34.7■■■■□ 3.15
SDF2L1-201ENST00000248958 PXDNQ92626 1479 aa34.7■■■■□ 3.15
SDF2L1-201ENST00000248958 ITSN1Q15811 1721 aa34.68■■■■□ 3.14
SDF2L1-201ENST00000248958 PNPLA6Q8IY17 1366 aa34.67■■■■□ 3.14
SDF2L1-201ENST00000248958 CDK19Q9BWU1 502 aa34.65■■■■□ 3.14
SDF2L1-201ENST00000248958 CARD11Q9BXL7 1154 aa34.64■■■■□ 3.14
SDF2L1-201ENST00000248958 PRR36Q9H6K5 1346 aa34.63■■■■□ 3.13
SDF2L1-201ENST00000248958 PSME1Q06323 249 aa34.63■■■■□ 3.13
SDF2L1-201ENST00000248958 CCER1Q8TC90 406 aaPredicted RBP34.63■■■■□ 3.13
SDF2L1-201ENST00000248958 ATP7BP35670 1465 aa34.61■■■■□ 3.13
SDF2L1-201ENST00000248958 KRT28Q7Z3Y7 464 aa34.61■■■■□ 3.13
SDF2L1-201ENST00000248958 NUDT16Q96DE0 195 aaKnown RBP34.61■■■■□ 3.13
SDF2L1-201ENST00000248958 LRP6O75581 1613 aa34.6■■■■□ 3.13
SDF2L1-201ENST00000248958 COL22A1Q8NFW1 1626 aaPredicted RBP34.6■■■■□ 3.13
SDF2L1-201ENST00000248958 XPCQ01831 940 aaPredicted RBP34.59■■■■□ 3.13
SDF2L1-201ENST00000248958 PMFBP1Q8TBY8 1022 aa34.59■■■■□ 3.13
SDF2L1-201ENST00000248958 MEX3CQ5U5Q3 659 aaKnown RBP34.57■■■■□ 3.12
SDF2L1-201ENST00000248958 NUTM2BA6NNL0 878 aaPredicted RBP34.56■■■■□ 3.12
SDF2L1-201ENST00000248958 NUTM2EB1AL46 878 aaPredicted RBP34.56■■■■□ 3.12
SDF2L1-201ENST00000248958 NUTM2AQ8IVF1 878 aaPredicted RBP34.56■■■■□ 3.12
SDF2L1-201ENST00000248958 TOPAZ1Q8N9V7 1692 aa34.55■■■■□ 3.12
SDF2L1-201ENST00000248958 SBNO1A3KN83 1393 aa34.55■■■■□ 3.12
SDF2L1-201ENST00000248958 CCDC61Q9Y6R9 512 aa34.55■■■■□ 3.12
SDF2L1-201ENST00000248958 SPATA31A3Q5VYP0 1347 aa34.55■■■■□ 3.12
SDF2L1-201ENST00000248958 SRPK2P78362 688 aaKnown RBP34.54■■■■□ 3.12
SDF2L1-201ENST00000248958 EVC2Q86UK5 1308 aa34.54■■■■□ 3.12
SDF2L1-201ENST00000248958 NGDNQ8NEJ9 315 aaKnown RBP34.52■■■■□ 3.12
SDF2L1-201ENST00000248958 SBNO2Q9Y2G9 1366 aa34.5■■■■□ 3.11
SDF2L1-201ENST00000248958 TNS3Q68CZ2 1445 aa34.5■■■■□ 3.11
SDF2L1-201ENST00000248958 RGS17Q9UGC6 210 aaPredicted RBP34.48■■■■□ 3.11
SDF2L1-201ENST00000248958 TRPM3Q9HCF6 1732 aaPredicted RBP34.47■■■■□ 3.11
SDF2L1-201ENST00000248958 PLEKHG3A1L390 1219 aa34.47■■■■□ 3.11
SDF2L1-201ENST00000248958 CABP2Q9NPB3 220 aa34.47■■■■□ 3.11
SDF2L1-201ENST00000248958 ARHGEF10O15013 1369 aa34.46■■■■□ 3.11
SDF2L1-201ENST00000248958 POLR3AO14802 1390 aaPredicted RBP34.44■■■■□ 3.1
SDF2L1-201ENST00000248958 PPIP5K1Q6PFW1 1433 aa34.42■■■■□ 3.1
SDF2L1-201ENST00000248958 ZNF772Q68DY9 489 aaPredicted RBP34.42■■■■□ 3.1
SDF2L1-201ENST00000248958 ACEP12821 1306 aa34.4■■■■□ 3.1
SDF2L1-201ENST00000248958 SLC24A1O60721 1099 aa34.4■■■■□ 3.1
SDF2L1-201ENST00000248958 MARF1Q9Y4F3 1742 aaKnown RBP34.4■■■■□ 3.1
SDF2L1-201ENST00000248958 ALS2Q96Q42 1657 aa34.4■■■■□ 3.1
SDF2L1-201ENST00000248958 ADAMTS2O95450 1211 aa34.38■■■■□ 3.09
SDF2L1-201ENST00000248958 LMOD2Q6P5Q4 547 aa34.37■■■■□ 3.09
SDF2L1-201ENST00000248958 C8orf37Q96NL8 207 aa34.37■■■■□ 3.09
SDF2L1-201ENST00000248958 ATAD2Q6PL18 1390 aa34.36■■■■□ 3.09
SDF2L1-201ENST00000248958 AFF2P51816 1311 aa34.33■■■■□ 3.09
SDF2L1-201ENST00000248958 PAK3O75914 559 aaPredicted RBP34.33■■■■□ 3.09
SDF2L1-201ENST00000248958 NGLY1Q96IV0 654 aa34.33■■■■□ 3.09
SDF2L1-201ENST00000248958 BRD4O60885 1362 aaPredicted RBP34.33■■■■□ 3.09
SDF2L1-201ENST00000248958 POTEAQ6S8J7 498 aa34.32■■■■□ 3.08
SDF2L1-201ENST00000248958 CABP1Q9NZU7 370 aa34.32■■■■□ 3.08
SDF2L1-201ENST00000248958 ST20-MTHFSA0A0A6YYL1 179 aa34.31■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms