RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W HOT13P36078 116 aa5.81□□□□□ -1.48
UFD1YGR048W YAL064WP39711 94 aa5.81□□□□□ -1.48
UFD1YGR048W WWM1P43582 211 aaKnown RBP5.81□□□□□ -1.48
UFD1YGR048W PMP3P87284 55 aa5.81□□□□□ -1.48
UFD1YGR048W YMR122W-AQ3E842 84 aa5.81□□□□□ -1.48
UFD1YGR048W RPL29P05747 59 aaPredicted RBP5.8□□□□□ -1.48
UFD1YGR048W YKL097CP34245 136 aa5.8□□□□□ -1.48
UFD1YGR048W COX23P38824 151 aa5.8□□□□□ -1.48
UFD1YGR048W YER135CP40082 130 aa5.8□□□□□ -1.48
UFD1YGR048W LIP1Q03579 150 aa5.8□□□□□ -1.48
UFD1YGR048W YOL014WQ08110 124 aa5.8□□□□□ -1.48
UFD1YGR048W FAB1P34756 2278 aa5.79□□□□□ -1.48
UFD1YGR048W YOR011W-AQ3E807 68 aa5.79□□□□□ -1.48
UFD1YGR048W YPR010C-AA5Z2X5 72 aa5.78□□□□□ -1.48
UFD1YGR048W FYV5P25585 152 aa5.77□□□□□ -1.49
UFD1YGR048W YIL102CP40488 101 aa5.77□□□□□ -1.49
UFD1YGR048W YPR013CQ12145 317 aa5.77□□□□□ -1.49
UFD1YGR048W HUB1Q6Q546 73 aa5.77□□□□□ -1.49
UFD1YGR048W EDC2P40023 145 aaPredicted RBP5.75□□□□□ -1.49
UFD1YGR048W YCR095W-AQ3E787 52 aa5.73□□□□□ -1.49
UFD1YGR048W RPS11AP0CX47 156 aaKnown RBP5.72□□□□□ -1.49
UFD1YGR048W RPS11BP0CX48 156 aaKnown RBP5.72□□□□□ -1.49
UFD1YGR048W DDR48P18899 430 aaKnown RBP5.72□□□□□ -1.49
UFD1YGR048W SPC1P46965 94 aa5.72□□□□□ -1.49
UFD1YGR048W MRPS8Q03799 155 aa5.72□□□□□ -1.49
UFD1YGR048W YOL013W-AP0C272 63 aaPredicted RBP5.71□□□□□ -1.5
UFD1YGR048W YCR043CP25361 127 aa5.71□□□□□ -1.5
UFD1YGR048W YHR213W-BQ8TGK1 99 aa5.71□□□□□ -1.5
UFD1YGR048W YCL048W-AQ2V2Q2 79 aa5.7□□□□□ -1.5
UFD1YGR048W YDL241WQ07738 123 aa5.69□□□□□ -1.5
UFD1YGR048W MVB12P42939 101 aa5.68□□□□□ -1.5
UFD1YGR048W COX17Q12287 69 aa5.68□□□□□ -1.5
UFD1YGR048W YIL156W-BQ2V2P4 73 aa5.68□□□□□ -1.5
UFD1YGR048W SDH6Q3E785 79 aa5.68□□□□□ -1.5
UFD1YGR048W YNL162W-AQ3E7A8 72 aa5.67□□□□□ -1.5
UFD1YGR048W YLR157W-DP0CE99 70 aa5.66□□□□□ -1.5
UFD1YGR048W YDR010CQ12426 110 aa5.66□□□□□ -1.5
UFD1YGR048W YJL133C-AQ3E7A3 74 aa5.66□□□□□ -1.5
UFD1YGR048W YNL042W-BQ3E7Z2 85 aa5.66□□□□□ -1.5
UFD1YGR048W YMR001C-AQ8TGS9 76 aa5.66□□□□□ -1.5
UFD1YGR048W YAR023CD6VPM8 179 aa5.65□□□□□ -1.5
UFD1YGR048W YCR001WP25347 104 aa5.65□□□□□ -1.5
UFD1YGR048W YER145C-AA0A023PYF4 145 aa5.63□□□□□ -1.51
UFD1YGR048W QCR10P37299 77 aa5.63□□□□□ -1.51
UFD1YGR048W YGL149WP53116 101 aa5.63□□□□□ -1.51
UFD1YGR048W YBR230W-AQ3E762 66 aa5.63□□□□□ -1.51
UFD1YGR048W AQY2P0CD90 149 aa5.61□□□□□ -1.51
UFD1YGR048W YHR125WP38831 101 aa5.61□□□□□ -1.51
UFD1YGR048W YJL127C-BQ3E828 52 aa5.61□□□□□ -1.51
UFD1YGR048W YBL039W-BP0C268 59 aa5.6□□□□□ -1.51
UFD1YGR048W ECM19Q06011 112 aa5.6□□□□□ -1.51
UFD1YGR048W ATP17Q06405 101 aa5.6□□□□□ -1.51
UFD1YGR048W MRX7P53869 86 aa5.59□□□□□ -1.51
UFD1YGR048W TMC1Q08422 150 aaPredicted RBP5.59□□□□□ -1.51
UFD1YGR048W HOR7Q05827 59 aa5.58□□□□□ -1.52
UFD1YGR048W YLR307C-AQ3E825 87 aa5.57□□□□□ -1.52
UFD1YGR048W YBR027CP38220 110 aa5.56□□□□□ -1.52
UFD1YGR048W RPC10P40422 70 aa5.55□□□□□ -1.52
UFD1YGR048W BSC4P53841 131 aa5.55□□□□□ -1.52
UFD1YGR048W YBR182C-AQ8TGU6 64 aa5.53□□□□□ -1.52
UFD1YGR048W AUA1P32450 94 aa5.52□□□□□ -1.53
UFD1YGR048W SNA2P56508 79 aa5.52□□□□□ -1.53
UFD1YGR048W SOM1Q05676 74 aa5.52□□□□□ -1.53
UFD1YGR048W HFA1P32874 2273 aa5.51□□□□□ -1.53
UFD1YGR048W IGD1P43598 195 aa5.51□□□□□ -1.53
UFD1YGR048W RDS3Q06835 107 aaPredicted RBP5.51□□□□□ -1.53
UFD1YGR048W YGR240C-AQ3E786 66 aa5.51□□□□□ -1.53
UFD1YGR048W TAR1Q8TGM6 124 aa5.51□□□□□ -1.53
UFD1YGR048W YAR064WP39563 99 aa5.5□□□□□ -1.53
UFD1YGR048W DDR2P89113 61 aa5.49□□□□□ -1.53
UFD1YGR048W YFR032C-BQ8TGU2 87 aa5.48□□□□□ -1.53
UFD1YGR048W LCL2Q08045 131 aa5.47□□□□□ -1.53
UFD1YGR048W YJL197C-AP0C5P0 93 aa5.46□□□□□ -1.54
UFD1YGR048W YNL122CP53921 115 aaPredicted RBP5.46□□□□□ -1.54
UFD1YGR048W FYV12Q08559 129 aa5.44□□□□□ -1.54
UFD1YGR048W TOM1Q03280 3268 aa5.44□□□□□ -1.54
UFD1YGR048W IRA2P19158 3079 aa5.43□□□□□ -1.54
UFD1YGR048W YHR007C-AQ07074 71 aa5.4□□□□□ -1.54
UFD1YGR048W URA2P07259 2214 aaKnown RBP5.4□□□□□ -1.55
UFD1YGR048W YOR072WQ08486 104 aa5.39□□□□□ -1.55
UFD1YGR048W Q0032Q9ZZX7 96 aa5.39□□□□□ -1.55
UFD1YGR048W RPL33AP05744 107 aaKnown RBP5.36□□□□□ -1.55
UFD1YGR048W RPL33BP41056 107 aaKnown RBP5.36□□□□□ -1.55
UFD1YGR048W RTC6O14464 93 aa5.35□□□□□ -1.55
UFD1YGR048W YGL014C-AP0C5N1 53 aa5.35□□□□□ -1.55
UFD1YGR048W VPS13Q07878 3144 aa5.34□□□□□ -1.55
UFD1YGR048W SGF11Q03067 99 aa5.33□□□□□ -1.56
UFD1YGR048W CSF1Q12150 2958 aa5.32□□□□□ -1.56
UFD1YGR048W GIS2P53849 153 aaKnown RBP RIP-Chip data5.31□□□□□ -1.56not detected
UFD1YGR048W YDR115WQ04598 105 aa5.3□□□□□ -1.56
UFD1YGR048W YPL278CQ08990 100 aa5.29□□□□□ -1.56
UFD1YGR048W TAO3P40468 2376 aa5.28□□□□□ -1.56
UFD1YGR048W YDL012CQ12489 107 aa5.28□□□□□ -1.56
UFD1YGR048W YBL008W-AQ3E821 79 aa5.27□□□□□ -1.57
UFD1YGR048W YBR201C-AQ2V2Q3 67 aa5.25□□□□□ -1.57
UFD1YGR048W YGL041C-BQ3E750 60 aa5.24□□□□□ -1.57
UFD1YGR048W YHR212W-AP0CX91 67 aa5.22□□□□□ -1.57
UFD1YGR048W YCR041WP37265 110 aa5.22□□□□□ -1.57
UFD1YGR048W YLR255CO13574 117 aa5.21□□□□□ -1.58
UFD1YGR048W YJR128WP47162 119 aa5.21□□□□□ -1.58
Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms