RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ATXN3LQ9H3M9 355 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 DNAJC12Q9UKB3 198 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 TSPAN16Q9UKR8 245 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 FAM50BQ9Y247 325 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 ASB3Q9Y575 518 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 PCDHB4Q9Y5E5 795 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 TICRRQ7Z2Z1 1910 aa9.77□□□□□ -0.85
VPS35-206ENST00000565228 ZNF318Q5VUA4 2279 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 ZNF840PA6NDX5 716 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 ARNTLO00327 626 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 AP5Z1O43299 807 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 CSH1P0DML2 217 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 CSH2P0DML3 217 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 P4HA1P13674 534 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 RPL10AP62906 217 aaKnown RBP9.76□□□□□ -0.85
VPS35-206ENST00000565228 GPC5P78333 572 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 PDE4CQ08493 712 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 IFRD2Q12894 506 aaPredicted RBP9.76□□□□□ -0.85
VPS35-206ENST00000565228 MAPRE1Q15691 268 aaKnown RBP9.76□□□□□ -0.85
VPS35-206ENST00000565228 ARHGAP44Q17R89 818 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 GPR158Q5T848 1215 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 CYP4A22Q5TCH4 519 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 PIGZQ86VD9 579 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 ARID3BQ8IVW6 561 aaPredicted RBP9.76□□□□□ -0.85
VPS35-206ENST00000565228 MAB21L3Q8N8X9 362 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 ZSCAN18Q8TBC5 510 aaPredicted RBP9.76□□□□□ -0.85
VPS35-206ENST00000565228 CLEC4CQ8WTT0 213 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 USP13Q92995 863 aaPredicted RBP9.76□□□□□ -0.85
VPS35-206ENST00000565228 SMARCD1Q96GM5 515 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 ZFRQ96KR1 1074 aaKnown RBP9.76□□□□□ -0.85
VPS35-206ENST00000565228 DUSP16Q9BY84 665 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.76□□□□□ -0.85
VPS35-206ENST00000565228 GMIPQ9P107 970 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 APEX2Q9UBZ4 518 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 CHORDC1Q9UHD1 332 aaPredicted RBP9.76□□□□□ -0.85
VPS35-206ENST00000565228 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.76□□□□□ -0.85
VPS35-206ENST00000565228 NR2E1Q9Y466 385 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 ZDBF2Q9HCK1 2354 aa9.76□□□□□ -0.85
VPS35-206ENST00000565228 DCHS1Q96JQ0 3298 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 KRBA1A5PL33 1030 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 OTOL1A6NHN0 477 aaPredicted RBP9.75□□□□□ -0.85
VPS35-206ENST00000565228 LGALS16A8MUM7 142 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 PIK3R2O00459 728 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 TRIM66O15016 1216 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 CYP26A1O43174 497 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 DCXO43602 365 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 OLFM2O95897 454 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 TBX18O95935 607 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 OAS1P00973 400 aaKnown RBP9.75□□□□□ -0.85
VPS35-206ENST00000565228 NPR3P17342 541 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 TBXAS1P24557 533 aaPredicted RBP9.75□□□□□ -0.85
VPS35-206ENST00000565228 KIF11P52732 1056 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 RAB41Q5JT25 222 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 E4F1Q66K89 784 aaPredicted RBP9.75□□□□□ -0.85
VPS35-206ENST00000565228 PMF1Q6P1K2 205 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 ELMSAN1Q6PJG2 1045 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 HFE2Q6ZVN8 426 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 ITIH5Q86UX2 942 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 SLC47A2Q86VL8 602 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 GAS2L3Q86XJ1 694 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 FAM114A1Q8IWE2 563 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 NUP93Q8N1F7 819 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 ARL14EPQ8N8R7 260 aaPredicted RBP9.75□□□□□ -0.85
VPS35-206ENST00000565228 ANKRD52Q8NB46 1076 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 CCDC150Q8NCX0 1101 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 DDX1Q92499 740 aaKnown RBP9.75□□□□□ -0.85
VPS35-206ENST00000565228 SECISBP2LQ93073 1101 aaKnown RBP9.75□□□□□ -0.85
VPS35-206ENST00000565228 ZFYVE19Q96K21 471 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 TASP1Q9H6P5 420 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 TRPV4Q9HBA0 871 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 DMAP1Q9NPF5 467 aaPredicted RBP9.75□□□□□ -0.85
VPS35-206ENST00000565228 RTN4Q9NQC3 1192 aaKnown RBP9.75□□□□□ -0.85
VPS35-206ENST00000565228 GDE1Q9NZC3 331 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 NUDT5Q9UKK9 219 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 USP3Q9Y6I4 520 aa9.75□□□□□ -0.85
VPS35-206ENST00000565228 KMT2EQ8IZD2 1858 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 ANTXRLA6NF34 631 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 HEPACAM2A8MVW5 462 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 ZNF197O14709 1029 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 SCAMP3O14828 347 aaKnown RBP9.74□□□□□ -0.85
VPS35-206ENST00000565228 MDM4O15151 490 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 GREM1O60565 184 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 ECI2O75521 394 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 PAEPP09466 180 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 FAM200BP0CF97 657 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 VDRP11473 427 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 UCHL3P15374 230 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 CD19P15391 556 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 CHRNB2P17787 502 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 PBX1P40424 430 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 GPD2P43304 727 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 RGS7P49802 495 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 JAM2P57087 298 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 TDGQ13569 410 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 DRAP1Q14919 205 aaPredicted RBP9.74□□□□□ -0.85
VPS35-206ENST00000565228 VEPH1Q14D04 833 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 SYCP1Q15431 976 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 CNGA2Q16280 664 aa9.74□□□□□ -0.85
VPS35-206ENST00000565228 NAIF1Q69YI7 327 aaPredicted RBP9.74□□□□□ -0.85
VPS35-206ENST00000565228 LCLAT1Q6UWP7 414 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 1069.6 ms