RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 TAF10Q12962 218 aa20.6■□□□□ 0.89
USP40-207ENST00000450940 PON2Q15165 354 aa20.6■□□□□ 0.89
USP40-207ENST00000450940 TRIM68Q6AZZ1 485 aa20.6■□□□□ 0.89
USP40-207ENST00000450940 ACOT1Q86TX2 421 aa20.6■□□□□ 0.89
USP40-207ENST00000450940 ZC3H3Q8IXZ2 948 aaKnown RBP20.6■□□□□ 0.89
USP40-207ENST00000450940 ADSSL1Q8N142 457 aa20.6■□□□□ 0.89
USP40-207ENST00000450940 SUMF1Q8NBK3 374 aa20.6■□□□□ 0.89
USP40-207ENST00000450940 OSCP1Q8WVF1 389 aa20.6■□□□□ 0.89
USP40-207ENST00000450940 OVCA2Q8WZ82 227 aa20.6■□□□□ 0.89
USP40-207ENST00000450940 KCNK16Q96T55 309 aa20.6■□□□□ 0.89
USP40-207ENST00000450940 CYP3A43Q9HB55 503 aa20.6■□□□□ 0.89
USP40-207ENST00000450940 APOBEC3GQ9HC16 384 aaKnown RBP20.6■□□□□ 0.89
USP40-207ENST00000450940 TMEM8AQ9HCN3 771 aa20.6■□□□□ 0.89
USP40-207ENST00000450940 CSNK1G1Q9HCP0 422 aa20.6■□□□□ 0.89
USP40-207ENST00000450940 RBM12Q9NTZ6 932 aaKnown RBP20.6■□□□□ 0.89
USP40-207ENST00000450940 COMMD8Q9NX08 183 aa20.6■□□□□ 0.89
USP40-207ENST00000450940 EP300Q09472 2414 aaPredicted RBP20.6■□□□□ 0.89
USP40-207ENST00000450940 FAM92AA1XBS5 289 aa20.59■□□□□ 0.89
USP40-207ENST00000450940 CETN3O15182 167 aa20.59■□□□□ 0.89
USP40-207ENST00000450940 KINO60870 393 aaKnown RBP20.59■□□□□ 0.89
USP40-207ENST00000450940 OAS1P00973 400 aaKnown RBP20.59■□□□□ 0.89
USP40-207ENST00000450940 ARSAP15289 507 aa20.59■□□□□ 0.89
USP40-207ENST00000450940 ZXDBP98169 803 aa20.59■□□□□ 0.89
USP40-207ENST00000450940 TMEM196Q5HYL7 178 aa20.59■□□□□ 0.89
USP40-207ENST00000450940 TSSK4Q6SA08 328 aa20.59■□□□□ 0.89
USP40-207ENST00000450940 SH3RF2Q8TEC5 729 aa20.59■□□□□ 0.89
USP40-207ENST00000450940 SMARCD1Q96GM5 515 aa20.59■□□□□ 0.89
USP40-207ENST00000450940 FAXDC2Q96IV6 333 aa20.59■□□□□ 0.89
USP40-207ENST00000450940 SLITRK1Q96PX8 696 aa20.59■□□□□ 0.89
USP40-207ENST00000450940 IMPG2Q9BZV3 1241 aa20.59■□□□□ 0.89
USP40-207ENST00000450940 RNF38Q9H0F5 515 aa20.59■□□□□ 0.89
USP40-207ENST00000450940 DUS2Q9NX74 493 aaKnown RBP20.59■□□□□ 0.89
USP40-207ENST00000450940 HMGXB4Q9UGU5 601 aa20.59■□□□□ 0.89
USP40-207ENST00000450940 YWHAQP27348 245 aa20.58■□□□□ 0.89
USP40-207ENST00000450940 CXCL12P48061 93 aa20.58■□□□□ 0.89
USP40-207ENST00000450940 NRLP54845 237 aa20.58■□□□□ 0.89
USP40-207ENST00000450940 AMPD2Q01433 879 aa20.58■□□□□ 0.89
USP40-207ENST00000450940 PPP2R5DQ14738 602 aa20.58■□□□□ 0.89
USP40-207ENST00000450940 EML3Q32P44 896 aa20.58■□□□□ 0.89
USP40-207ENST00000450940 SNX30Q5VWJ9 437 aa20.58■□□□□ 0.89
USP40-207ENST00000450940 KRT39Q6A163 491 aa20.58■□□□□ 0.89
USP40-207ENST00000450940 PDZD8Q8NEN9 1154 aa20.58■□□□□ 0.89
USP40-207ENST00000450940 ATRIPQ8WXE1 791 aa20.58■□□□□ 0.89
USP40-207ENST00000450940 ATP2A3Q93084 1043 aa20.58■□□□□ 0.89
USP40-207ENST00000450940 SMARCE1Q969G3 411 aa20.58■□□□□ 0.89
USP40-207ENST00000450940 ECT2Q9H8V3 914 aa20.58■□□□□ 0.89
USP40-207ENST00000450940 DMAP1Q9NPF5 467 aaPredicted RBP20.58■□□□□ 0.89
USP40-207ENST00000450940 HOOK1Q9UJC3 728 aaKnown RBP20.58■□□□□ 0.89
USP40-207ENST00000450940 CLSTN1O94985 981 aa20.57■□□□□ 0.88
USP40-207ENST00000450940 GJA4P35212 333 aa20.57■□□□□ 0.88
USP40-207ENST00000450940 SATB1Q01826 763 aa20.57■□□□□ 0.88
USP40-207ENST00000450940 ANKRD40Q6AI12 368 aa20.57■□□□□ 0.88
USP40-207ENST00000450940 CPA6Q8N4T0 437 aa20.57■□□□□ 0.88
USP40-207ENST00000450940 ZMIZ2Q8NF64 920 aa20.57■□□□□ 0.88
USP40-207ENST00000450940 WHAMMQ8TF30 809 aa20.57■□□□□ 0.88
USP40-207ENST00000450940 EEF2KMTQ96G04 330 aa20.57■□□□□ 0.88
USP40-207ENST00000450940 SMOQ99835 787 aa20.57■□□□□ 0.88
USP40-207ENST00000450940 MED10Q9BTT4 135 aa20.57■□□□□ 0.88
USP40-207ENST00000450940 NIF3L1Q9GZT8 377 aa20.57■□□□□ 0.88
USP40-207ENST00000450940 STX10O60499 249 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 AP1G2O75843 785 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 ZDHHC11BP0C7U3 371 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 EPB41P11171 864 aaKnown RBP20.56■□□□□ 0.88
USP40-207ENST00000450940 CCDC130P13994 396 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 IFNAR2P48551 515 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 FKBP3Q00688 224 aaKnown RBP20.56■□□□□ 0.88
USP40-207ENST00000450940 ORC1Q13415 861 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 FSTL4Q6MZW2 842 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 Q6ZS52 159 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 C12orf29Q8N999 325 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 SCAMP5Q8TAC9 235 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 SLC2A14Q8TDB8 520 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 SEMA4DQ92854 862 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 ERCC4Q92889 916 aaPredicted RBP20.56■□□□□ 0.88
USP40-207ENST00000450940 FBXO32Q969P5 355 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 TWNKQ96RR1 684 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 HNRNPABQ99729 332 aaKnown RBP20.56■□□□□ 0.88
USP40-207ENST00000450940 EPC1Q9H2F5 836 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 LINC00597Q9H2U6 94 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 KRT82Q9NSB4 513 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 WNT6Q9Y6F9 365 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 SPTBN4Q9H254 2564 aa20.56■□□□□ 0.88
USP40-207ENST00000450940 LEFTY2O00292 366 aa20.55■□□□□ 0.88
USP40-207ENST00000450940 SLC16A3O15427 465 aaKnown RBP20.55■□□□□ 0.88
USP40-207ENST00000450940 CILPO75339 1184 aa20.55■□□□□ 0.88
USP40-207ENST00000450940 BEST1O76090 585 aa20.55■□□□□ 0.88
USP40-207ENST00000450940 HOXA6P31267 233 aa20.55■□□□□ 0.88
USP40-207ENST00000450940 GALK1P51570 392 aa20.55■□□□□ 0.88
USP40-207ENST00000450940 SLC5A3P53794 718 aa20.55■□□□□ 0.88
USP40-207ENST00000450940 PMS1P54277 932 aaKnown RBP20.55■□□□□ 0.88
USP40-207ENST00000450940 LRRC63Q05C16 580 aa20.55■□□□□ 0.88
USP40-207ENST00000450940 GRSF1Q12849 480 aaKnown RBP eCLIP20.55■□□□□ 0.88
USP40-207ENST00000450940 CCDC150Q8NCX0 1101 aa20.55■□□□□ 0.88
USP40-207ENST00000450940 FBXL13Q8NEE6 735 aa20.55■□□□□ 0.88
USP40-207ENST00000450940 TSG101Q99816 390 aa20.55■□□□□ 0.88
USP40-207ENST00000450940 NT5C1AQ9BXI3 368 aa20.55■□□□□ 0.88
USP40-207ENST00000450940 FAM124BQ9H5Z6 455 aaPredicted RBP20.55■□□□□ 0.88
USP40-207ENST00000450940 FBRSL1Q9HCM7 1045 aaKnown RBP20.55■□□□□ 0.88
USP40-207ENST00000450940 CIZ1Q9ULV3 898 aaPredicted RBP20.55■□□□□ 0.88
USP40-207ENST00000450940 COQ4Q9Y3A0 265 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms