RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 ZNF211Q13398 564 aaPredicted RBP28.17■■■□□ 2.1
MSX1-201ENST00000382723 TRNP1Q6NT89 227 aa28.17■■■□□ 2.1
MSX1-201ENST00000382723 CC2D1AQ6P1N0 951 aaPredicted RBP28.17■■■□□ 2.1
MSX1-201ENST00000382723 RXFP2Q8WXD0 754 aa28.17■■■□□ 2.1
MSX1-201ENST00000382723 RIN2Q8WYP3 895 aaPredicted RBP28.17■■■□□ 2.1
MSX1-201ENST00000382723 KHSRPQ92945 711 aaKnown RBP eCLIP28.17■■■□□ 2.1
MSX1-201ENST00000382723 VWA8A3KMH1 1905 aa28.17■■■□□ 2.1
MSX1-201ENST00000382723 HHLA1C9JL84 531 aa28.16■■■□□ 2.1
MSX1-201ENST00000382723 C2CD2LO14523 706 aa28.16■■■□□ 2.1
MSX1-201ENST00000382723 PDGFRAP16234 1089 aa28.16■■■□□ 2.1
MSX1-201ENST00000382723 GPD1P21695 349 aa28.16■■■□□ 2.1
MSX1-201ENST00000382723 GJC1P36383 396 aa28.16■■■□□ 2.1
MSX1-201ENST00000382723 GRIK1P39086 918 aa28.16■■■□□ 2.1
MSX1-201ENST00000382723 CKAP4Q07065 602 aaKnown RBP28.16■■■□□ 2.1
MSX1-201ENST00000382723 NFE2Q16621 373 aaPredicted RBP28.16■■■□□ 2.1
MSX1-201ENST00000382723 KIAA1841Q6NSI8 718 aa28.16■■■□□ 2.1
MSX1-201ENST00000382723 FNIP1Q8TF40 1166 aa28.16■■■□□ 2.1
MSX1-201ENST00000382723 SPG21Q9NZD8 308 aa28.16■■■□□ 2.1
MSX1-201ENST00000382723 SLC4A7Q9Y6M7 1214 aa28.16■■■□□ 2.1
MSX1-201ENST00000382723 C2CD4BA6NLJ0 364 aa28.16■■■□□ 2.1
MSX1-201ENST00000382723 ADCY1Q08828 1119 aa28.16■■■□□ 2.1
MSX1-201ENST00000382723 CFAP221Q4G0U5 840 aa28.16■■■□□ 2.1
MSX1-201ENST00000382723 NIPA2Q8N8Q9 360 aa28.16■■■□□ 2.1
MSX1-201ENST00000382723 HERVK_113Q902F9 699 aa28.16■■■□□ 2.1
MSX1-201ENST00000382723 NOL12Q9UGY1 213 aaKnown RBP eCLIP28.16■■■□□ 2.1
MSX1-201ENST00000382723 V9GYY5 206 aaPredicted RBP28.16■■■□□ 2.1
MSX1-201ENST00000382723 CTAGE15A4D2H0 777 aa28.15■■■□□ 2.1
MSX1-201ENST00000382723 CES2O00748 559 aa28.15■■■□□ 2.1
MSX1-201ENST00000382723 CTAGE8P0CG41 777 aa28.15■■■□□ 2.1
MSX1-201ENST00000382723 TCF4P15884 667 aa28.15■■■□□ 2.1
MSX1-201ENST00000382723 PAFAH1B1P43034 410 aa28.15■■■□□ 2.1
MSX1-201ENST00000382723 HTRA4P83105 476 aaPredicted RBP28.15■■■□□ 2.1
MSX1-201ENST00000382723 SLC26A9Q7LBE3 791 aa28.15■■■□□ 2.1
MSX1-201ENST00000382723 CTAGE6Q86UF2 777 aa28.15■■■□□ 2.1
MSX1-201ENST00000382723 SCN4BQ8IWT1 228 aa28.15■■■□□ 2.1
MSX1-201ENST00000382723 CTAGE4Q8IX94 777 aa28.15■■■□□ 2.1
MSX1-201ENST00000382723 RNF168Q8IYW5 571 aaPredicted RBP28.15■■■□□ 2.1
MSX1-201ENST00000382723 FIBCD1Q8N539 461 aa28.15■■■□□ 2.1
MSX1-201ENST00000382723 ULBP1Q9BZM6 244 aa28.15■■■□□ 2.1
MSX1-201ENST00000382723 UBXN6Q9BZV1 441 aa28.15■■■□□ 2.1
MSX1-201ENST00000382723 PCDHB5Q9Y5E4 795 aa28.15■■■□□ 2.1
MSX1-201ENST00000382723 TBC1D4O60343 1298 aa28.14■■■□□ 2.1
MSX1-201ENST00000382723 ZNF143P52747 638 aaPredicted RBP28.14■■■□□ 2.1
MSX1-201ENST00000382723 MRPS5P82675 430 aaKnown RBP28.14■■■□□ 2.1
MSX1-201ENST00000382723 RAB41Q5JT25 222 aa28.14■■■□□ 2.1
MSX1-201ENST00000382723 RHOT1Q8IXI2 618 aa28.14■■■□□ 2.1
MSX1-201ENST00000382723 UBE2Q2Q8WVN8 375 aa28.14■■■□□ 2.1
MSX1-201ENST00000382723 CFAP57Q96MR6 1250 aa28.14■■■□□ 2.1
MSX1-201ENST00000382723 CARD9Q9H257 536 aa28.14■■■□□ 2.1
MSX1-201ENST00000382723 INSL6Q9Y581 213 aa28.14■■■□□ 2.1
MSX1-201ENST00000382723 CDY1Q9Y6F8 540 aa28.14■■■□□ 2.1
MSX1-201ENST00000382723 PTPRSQ13332 1948 aa28.14■■■□□ 2.1
MSX1-201ENST00000382723 UQCRHLA0A096LP55 91 aa28.14■■■□□ 2.09
MSX1-201ENST00000382723 SOD2P04179 222 aa28.14■■■□□ 2.09
MSX1-201ENST00000382723 UQCRHP07919 91 aa28.14■■■□□ 2.09
MSX1-201ENST00000382723 RPL17P18621 184 aaKnown RBP28.14■■■□□ 2.09
MSX1-201ENST00000382723 RWDD2BP57060 319 aa28.14■■■□□ 2.09
MSX1-201ENST00000382723 PSMD5Q16401 504 aa28.14■■■□□ 2.09
MSX1-201ENST00000382723 AADACL2Q6P093 401 aa28.14■■■□□ 2.09
MSX1-201ENST00000382723 HERC6Q8IVU3 1022 aa28.14■■■□□ 2.09
MSX1-201ENST00000382723 ATAD1Q8NBU5 361 aa28.14■■■□□ 2.09
MSX1-201ENST00000382723 FAM149B1Q96BN6 582 aa28.14■■■□□ 2.09
MSX1-201ENST00000382723 ABHD8Q96I13 439 aa28.14■■■□□ 2.09
MSX1-201ENST00000382723 CHST7Q9NS84 486 aa28.14■■■□□ 2.09
MSX1-201ENST00000382723 SBDSQ9Y3A5 250 aaKnown RBP eCLIP28.14■■■□□ 2.09
MSX1-201ENST00000382723 USP17L7P0C7H9 530 aa28.13■■■□□ 2.09
MSX1-201ENST00000382723 ATP2A2P16615 1042 aaKnown RBP28.13■■■□□ 2.09
MSX1-201ENST00000382723 C15orf59Q2T9L4 293 aaPredicted RBP28.13■■■□□ 2.09
MSX1-201ENST00000382723 EFHC1Q5JVL4 640 aa28.13■■■□□ 2.09
MSX1-201ENST00000382723 AAASQ9NRG9 546 aa28.13■■■□□ 2.09
MSX1-201ENST00000382723 ASNSD1Q9NWL6 643 aa28.13■■■□□ 2.09
MSX1-201ENST00000382723 RNF14Q9UBS8 474 aa28.13■■■□□ 2.09
MSX1-201ENST00000382723 SCNN1AP37088 669 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 CDO1Q16878 200 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 CCDC14Q49A88 953 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 SH3PXD2AQ5TCZ1 1133 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 RNF19BQ6ZMZ0 732 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 ARFGAP1Q8N6T3 406 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 FBXO22Q8NEZ5 403 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 PIK3R5Q8WYR1 880 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 FUBP3Q96I24 572 aaKnown RBP eCLIP28.12■■■□□ 2.09
MSX1-201ENST00000382723 RNPC3Q96LT9 517 aaKnown RBP28.12■■■□□ 2.09
MSX1-201ENST00000382723 CNPY3Q9BT09 278 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 PCDHB12Q9Y5F1 795 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 ADAM12O43184 909 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 PSTPIP1O43586 416 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 LRCH4O75427 683 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 TADA3O75528 432 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 FBXO21O94952 628 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 PYGMP11217 842 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 ATP11AP98196 1134 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 GPR17Q13304 367 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 TTC9BQ8N6N2 239 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 SLC9A7Q96T83 725 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 OXCT2Q9BYC2 517 aaPredicted RBP28.12■■■□□ 2.09
MSX1-201ENST00000382723 MTRRQ9UBK8 725 aa28.12■■■□□ 2.09
MSX1-201ENST00000382723 CCDC85CA6NKD9 419 aa28.11■■■□□ 2.09
MSX1-201ENST00000382723 RNF8O76064 485 aa28.11■■■□□ 2.09
MSX1-201ENST00000382723 SDC4P31431 198 aa28.11■■■□□ 2.09
MSX1-201ENST00000382723 NAA30Q147X3 362 aaPredicted RBP28.11■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms