RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 CYP2F1P24903 491 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 PSMA2P25787 234 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 SCNN1AP37088 669 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 TKTL1P51854 596 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 TAS2R40P59535 323 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 PIGHQ14442 188 aaPredicted RBP19.55■□□□□ 0.72
CLN3-206ENST00000360019 NFE2Q16621 373 aaPredicted RBP19.55■□□□□ 0.72
CLN3-206ENST00000360019 COL13A1Q5TAT6 717 aaPredicted RBP19.55■□□□□ 0.72
CLN3-206ENST00000360019 SLC26A9Q7LBE3 791 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 HERC6Q8IVU3 1022 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 MYRIPQ8NFW9 859 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 UBE2Q2Q8WVN8 375 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 NDRG1Q92597 394 aaKnown RBP19.55■□□□□ 0.72
CLN3-206ENST00000360019 PGLYRP2Q96PD5 576 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 ABI2Q9NYB9 513 aaPredicted RBP19.55■□□□□ 0.72
CLN3-206ENST00000360019 SMARCAL1Q9NZC9 954 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 PCDHA3Q9Y5H8 950 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 SLC4A7Q9Y6M7 1214 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 CHD7Q9P2D1 2997 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 CCDC66A2RUB6 948 aa19.54■□□□□ 0.72
CLN3-206ENST00000360019 H7C4K7 107 aa19.54■□□□□ 0.72
CLN3-206ENST00000360019 CES2O00748 559 aa19.54■□□□□ 0.72
CLN3-206ENST00000360019 TCF4P15884 667 aa19.54■□□□□ 0.72
CLN3-206ENST00000360019 ARFGAP1Q8N6T3 406 aa19.54■□□□□ 0.72
CLN3-206ENST00000360019 UBL4BQ8N7F7 174 aa19.54■□□□□ 0.72
CLN3-206ENST00000360019 RXFP2Q8WXD0 754 aa19.54■□□□□ 0.72
CLN3-206ENST00000360019 RIN2Q8WYP3 895 aaPredicted RBP19.54■□□□□ 0.72
CLN3-206ENST00000360019 PIK3R5Q8WYR1 880 aa19.54■□□□□ 0.72
CLN3-206ENST00000360019 DPF3Q92784 378 aa19.54■□□□□ 0.72
CLN3-206ENST00000360019 FUBP3Q96I24 572 aaKnown RBP eCLIP19.54■□□□□ 0.72
CLN3-206ENST00000360019 PBKQ96KB5 322 aa19.54■□□□□ 0.72
CLN3-206ENST00000360019 SLC9A7Q96T83 725 aa19.54■□□□□ 0.72
CLN3-206ENST00000360019 ZBED2Q9BTP6 218 aa19.54■□□□□ 0.72
CLN3-206ENST00000360019 SPG21Q9NZD8 308 aa19.54■□□□□ 0.72
CLN3-206ENST00000360019 INSL6Q9Y581 213 aa19.54■□□□□ 0.72
CLN3-206ENST00000360019 CPB1P15086 417 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 ZNF143P52747 638 aaPredicted RBP19.53■□□□□ 0.72
CLN3-206ENST00000360019 ARPP19P56211 112 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 MRPS5P82675 430 aaKnown RBP19.53■□□□□ 0.72
CLN3-206ENST00000360019 SIX6OS1Q8N1H7 587 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 LBHD1Q9BQE6 289 aaPredicted RBP19.53■□□□□ 0.72
CLN3-206ENST00000360019 OXCT2Q9BYC2 517 aaPredicted RBP19.53■□□□□ 0.72
CLN3-206ENST00000360019 ULBP1Q9BZM6 244 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 CARD9Q9H257 536 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 PNPLA8Q9NP80 782 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 MTRRQ9UBK8 725 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 PCDHB5Q9Y5E4 795 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 CEP290O15078 2479 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 ADAM12O43184 909 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 PDGFRAP16234 1089 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 GPD1P21695 349 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 GPR17Q13304 367 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 PSMD5Q16401 504 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 SLC8B1Q6J4K2 584 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 CC2D1AQ6P1N0 951 aaPredicted RBP19.53■□□□□ 0.72
CLN3-206ENST00000360019 FIBCD1Q8N539 461 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 CEP112Q8N8E3 955 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 ATAD1Q8NBU5 361 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 FBXO22Q8NEZ5 403 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 PHOSPHO2Q8TCD6 241 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 HERC2P3Q9BVR0 1158 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 CDY1Q9Y6F8 540 aa19.53■□□□□ 0.72
CLN3-206ENST00000360019 CDH23Q9H251 3354 aa19.52■□□□□ 0.72
CLN3-206ENST00000360019 MTMR11A4FU01 709 aa19.52■□□□□ 0.72
CLN3-206ENST00000360019 CARNS1A5YM72 827 aa19.52■□□□□ 0.72
CLN3-206ENST00000360019 C2CD2LO14523 706 aa19.52■□□□□ 0.72
CLN3-206ENST00000360019 LRCH4O75427 683 aa19.52■□□□□ 0.72
CLN3-206ENST00000360019 VNN2O95498 520 aa19.52■□□□□ 0.72
CLN3-206ENST00000360019 ATP2A2P16615 1042 aaKnown RBP19.52■□□□□ 0.72
CLN3-206ENST00000360019 GRIK1P39086 918 aa19.52■□□□□ 0.72
CLN3-206ENST00000360019 CCDC14Q49A88 953 aa19.52■□□□□ 0.72
CLN3-206ENST00000360019 RNF19BQ6ZMZ0 732 aa19.52■□□□□ 0.72
CLN3-206ENST00000360019 ARCQ7LC44 396 aa19.52■□□□□ 0.72
CLN3-206ENST00000360019 TTC9BQ8N6N2 239 aa19.52■□□□□ 0.72
CLN3-206ENST00000360019 MNS1Q8NEH6 495 aa19.52■□□□□ 0.72
CLN3-206ENST00000360019 SP7Q8TDD2 431 aaPredicted RBP19.52■□□□□ 0.72
CLN3-206ENST00000360019 CLP1Q92989 425 aaKnown RBP19.52■□□□□ 0.72
CLN3-206ENST00000360019 CFAP57Q96MR6 1250 aa19.52■□□□□ 0.72
CLN3-206ENST00000360019 RAD9AQ99638 391 aa19.52■□□□□ 0.72
CLN3-206ENST00000360019 CNPY3Q9BT09 278 aa19.52■□□□□ 0.72
CLN3-206ENST00000360019 CRISPLD1Q9H336 500 aa19.52■□□□□ 0.72
CLN3-206ENST00000360019 CNGB3Q9NQW8 809 aa19.52■□□□□ 0.72
CLN3-206ENST00000360019 BACE2Q9Y5Z0 518 aa19.52■□□□□ 0.72
CLN3-206ENST00000360019 PATJQ8NI35 1801 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 LCHNA4D1U4 455 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 DPYSL4O14531 572 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 CEP104O60308 925 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 RPL17P18621 184 aaKnown RBP19.51■□□□□ 0.71
CLN3-206ENST00000360019 PPM1AP35813 382 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 DAOAP59103 153 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 DSG1Q02413 1049 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 CKAP4Q07065 602 aaKnown RBP19.51■□□□□ 0.71
CLN3-206ENST00000360019 ZNF211Q13398 564 aaPredicted RBP19.51■□□□□ 0.71
CLN3-206ENST00000360019 C15orf59Q2T9L4 293 aaPredicted RBP19.51■□□□□ 0.71
CLN3-206ENST00000360019 EFHC1Q5JVL4 640 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 SH3PXD2AQ5TCZ1 1133 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 RASIP1Q5U651 963 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 KIAA1841Q6NSI8 718 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 AADACL2Q6P093 401 aa19.51■□□□□ 0.71
CLN3-206ENST00000360019 VSTM1Q6UX27 236 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms