RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W DCV1P43595 202 aa2.61□□□□□ -1.99
USE1YGL098W YFR054CP43622 192 aa2.61□□□□□ -1.99
USE1YGL098W API2Q04413 109 aa2.61□□□□□ -1.99
USE1YGL098W GAT3Q07928 141 aa2.61□□□□□ -1.99
USE1YGL098W NIP7Q08962 181 aaKnown RBP2.61□□□□□ -1.99
USE1YGL098W YMR175W-AQ3E766 64 aa2.61□□□□□ -1.99
USE1YGL098W RPL28P02406 149 aaKnown RBP2.6□□□□□ -1.99
USE1YGL098W YSF3P0C074 85 aaPredicted RBP2.6□□□□□ -1.99
USE1YGL098W ARF1P11076 181 aaKnown RBP2.6□□□□□ -1.99
USE1YGL098W IES6P32617 166 aa2.6□□□□□ -1.99
USE1YGL098W YBL071CP38185 102 aa2.6□□□□□ -1.99
USE1YGL098W MED6P38782 295 aa2.6□□□□□ -1.99
USE1YGL098W MTC6P38849 526 aa2.6□□□□□ -1.99
USE1YGL098W CTR2P38865 189 aa2.6□□□□□ -1.99
USE1YGL098W YNL208WP40159 199 aaKnown RBP2.6□□□□□ -1.99
USE1YGL098W URM1P40554 99 aaPredicted RBP2.6□□□□□ -1.99
USE1YGL098W EAF6P47128 113 aa2.6□□□□□ -1.99
USE1YGL098W RPL15BP54780 204 aaPredicted RBP2.6□□□□□ -1.99
USE1YGL098W YMR181CQ03231 154 aa2.6□□□□□ -1.99
USE1YGL098W COA3Q3E7B2 85 aa2.6□□□□□ -1.99
USE1YGL098W YLR342W-AQ3E810 57 aa2.6□□□□□ -1.99
USE1YGL098W YHR022CP38763 256 aa2.59□□□□□ -1.99
USE1YGL098W TVP23P38962 199 aa2.59□□□□□ -1.99
USE1YGL098W VTC1P40046 129 aaRIP-Chip data2.59□□□□□ -1.99not detected
USE1YGL098W SPI1P40092 148 aa2.59□□□□□ -1.99
USE1YGL098W HUR1P45820 110 aa2.59□□□□□ -1.99
USE1YGL098W FHN1P53279 174 aa2.59□□□□□ -1.99
USE1YGL098W TRS23Q03784 219 aa2.59□□□□□ -1.99
USE1YGL098W RPC11Q04307 110 aaPredicted RBP2.59□□□□□ -1.99
USE1YGL098W PPT2Q12036 173 aa2.59□□□□□ -1.99
USE1YGL098W YOR008C-AQ3E7B9 74 aa2.59□□□□□ -1.99
USE1YGL098W RPS14AP06367 137 aaKnown RBP2.58□□□□□ -2
USE1YGL098W YDL022C-AP0C5L6 82 aa2.58□□□□□ -2
USE1YGL098W AIM4P38305 123 aaPredicted RBP2.58□□□□□ -2
USE1YGL098W YBR209WP38311 105 aa2.58□□□□□ -2
USE1YGL098W RPS14BP39516 138 aaKnown RBP2.58□□□□□ -2
USE1YGL098W PEX17P40155 199 aa2.58□□□□□ -2
USE1YGL098W ECO1P43605 281 aa2.58□□□□□ -2
USE1YGL098W NRM1P53718 249 aa2.58□□□□□ -2
USE1YGL098W TDA7P53882 636 aaPredicted RBP2.58□□□□□ -2
USE1YGL098W MOT3P54785 490 aaKnown RBP2.58□□□□□ -2
USE1YGL098W YMR295CQ03559 197 aa2.58□□□□□ -2
USE1YGL098W PBP4Q07362 185 aaKnown RBP2.58□□□□□ -2
USE1YGL098W YLR285C-AQ3E771 56 aa2.58□□□□□ -2
USE1YGL098W YCR022CP25620 114 aa2.57□□□□□ -2
USE1YGL098W AGA1P32323 725 aa2.57□□□□□ -2
USE1YGL098W SPT4P32914 102 aaPredicted RBP2.57□□□□□ -2
USE1YGL098W MSA2P36157 363 aa2.57□□□□□ -2
USE1YGL098W YMR141CP40211 102 aa2.57□□□□□ -2
USE1YGL098W YFL019CP43576 117 aa2.57□□□□□ -2
USE1YGL098W GLO1P50107 326 aa2.57□□□□□ -2
USE1YGL098W SPS100P13130 326 aa2.56□□□□□ -2
USE1YGL098W HSP150P32478 413 aa2.56□□□□□ -2
USE1YGL098W YBR144CP34215 104 aa2.56□□□□□ -2
USE1YGL098W YGR018CP53211 109 aa2.56□□□□□ -2
USE1YGL098W PCP1P53259 346 aa2.56□□□□□ -2
USE1YGL098W YNL234WP53857 426 aa2.56□□□□□ -2
USE1YGL098W YDL009CQ12210 107 aa2.56□□□□□ -2
USE1YGL098W MIC10Q96VH5 97 aa2.56□□□□□ -2
USE1YGL098W YHR214C-DP0CX93 97 aa2.55□□□□□ -2
USE1YGL098W ATP15P21306 62 aa2.55□□□□□ -2
USE1YGL098W MXR2P25566 168 aa2.55□□□□□ -2
USE1YGL098W RSM18P40033 138 aa2.55□□□□□ -2
USE1YGL098W KEG1P43614 200 aa2.55□□□□□ -2
USE1YGL098W ICY1Q04329 127 aa2.55□□□□□ -2
USE1YGL098W IRC21Q04772 201 aa2.55□□□□□ -2
USE1YGL098W ATP20Q12233 115 aa2.55□□□□□ -2
USE1YGL098W YBR126W-AQ8TGU7 68 aa2.55□□□□□ -2
USE1YGL098W QCR8P08525 94 aa2.54□□□□□ -2
USE1YGL098W YHR213WP0CI67 198 aa2.54□□□□□ -2
USE1YGL098W RPL16AP26784 199 aaKnown RBP2.54□□□□□ -2
USE1YGL098W RRT1P38192 103 aa2.54□□□□□ -2
USE1YGL098W GAT4P40569 121 aa2.54□□□□□ -2
USE1YGL098W PIR5P46999 287 aa2.54□□□□□ -2
USE1YGL098W YNL190WP53872 204 aa2.54□□□□□ -2
USE1YGL098W NCE102Q12207 173 aaRIP-Chip data2.54□□□□□ -2not detected
USE1YGL098W PRM7Q12459 698 aa2.54□□□□□ -2
USE1YGL098W TDA8Q6B2U8 126 aa2.54□□□□□ -2
USE1YGL098W YLR156WP0CE96 114 aa2.53□□□□□ -2
USE1YGL098W YLR159WP0CE97 114 aa2.53□□□□□ -2
USE1YGL098W YLR161WP0CE98 114 aa2.53□□□□□ -2
USE1YGL098W RPS27AP35997 82 aaKnown RBP2.53□□□□□ -2
USE1YGL098W RPS27BP38711 82 aa2.53□□□□□ -2
USE1YGL098W TDA2P40045 126 aa2.53□□□□□ -2
USE1YGL098W ICS3P47034 131 aa2.53□□□□□ -2
USE1YGL098W MRPS12P53732 153 aa2.53□□□□□ -2
USE1YGL098W YOR314WQ12506 109 aa2.53□□□□□ -2
USE1YGL098W YOR381W-AQ3E804 55 aa2.53□□□□□ -2
USE1YGL098W YAL065CO13511 128 aa2.52□□□□□ -2.01
USE1YGL098W RPL26AP05743 127 aaKnown RBP2.52□□□□□ -2.01
USE1YGL098W YJR107C-AP0CT86 78 aa2.52□□□□□ -2.01
USE1YGL098W SHU1P38751 150 aa2.52□□□□□ -2.01
USE1YGL098W REE1P40893 198 aa2.52□□□□□ -2.01
USE1YGL098W IMP2P46972 177 aa2.52□□□□□ -2.01
USE1YGL098W PGU1P47180 361 aa2.52□□□□□ -2.01
USE1YGL098W ERI1P62651 68 aaKnown RBP2.52□□□□□ -2.01
USE1YGL098W YKL065W-AQ2V2P2 73 aa2.52□□□□□ -2.01
USE1YGL098W YDR246W-AQ3E763 66 aa2.52□□□□□ -2.01
USE1YGL098W YDR182W-AQ3E796 67 aa2.52□□□□□ -2.01
USE1YGL098W RRT15Q3E811 62 aa2.52□□□□□ -2.01
Retrieved 100 of 5,963 RNA–protein pairs in 29.5 ms