RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ZNF536O15090 1300 aa8.53□□□□□ -1.04
NUP54-215ENST00000514313 TISP43B9A030 160 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 ZFPL1O95159 310 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 NTSR2O95665 410 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 GPANK1O95872 356 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 SRGAP2BP0DMP2 458 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 HGFP14210 728 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 JUPP14923 745 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 TNFAIP3P21580 790 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 DDIT3P35638 169 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 ANXA11P50995 505 aaKnown RBP8.52□□□□□ -1.05
NUP54-215ENST00000514313 DDX10Q13206 875 aaKnown RBP8.52□□□□□ -1.05
NUP54-215ENST00000514313 CUL4BQ13620 913 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 ATP1A4Q13733 1029 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 ZNF124Q15973 351 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 PDCD4Q53EL6 469 aaKnown RBP8.52□□□□□ -1.05
NUP54-215ENST00000514313 XP32Q5T750 250 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 ARHGAP40Q5TG30 622 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 RGS7BPQ6MZT1 257 aaPredicted RBP8.52□□□□□ -1.05
NUP54-215ENST00000514313 TMTC1Q8IUR5 882 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 GSPT2Q8IYD1 628 aaKnown RBP8.52□□□□□ -1.05
NUP54-215ENST00000514313 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.52□□□□□ -1.05
NUP54-215ENST00000514313 TMEM171Q8WVE6 324 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 THAP4Q8WY91 577 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 SKA1Q96BD8 255 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 GRAMD1AQ96CP6 724 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 TEX101Q9BY14 249 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 GPR87Q9BY21 358 aa8.52□□□□□ -1.05
NUP54-215ENST00000514313 IFT80Q9P2H3 777 aaPredicted RBP8.52□□□□□ -1.05
NUP54-215ENST00000514313 NPEPPSL1A6NEC2 478 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 CCNT2O60583 730 aaKnown RBP8.51□□□□□ -1.05
NUP54-215ENST00000514313 ERN1O75460 977 aaKnown RBP8.51□□□□□ -1.05
NUP54-215ENST00000514313 VIPP01282 170 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 CSF1RP07333 972 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 ANXA6P08133 673 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 ELANEP08246 267 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 NDUFV1P49821 464 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 BCAT1P54687 386 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 SCAPQ12770 1279 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 PKN1Q16512 942 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 ANKRD45Q5TZF3 282 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 SPOCD1Q6ZMY3 1216 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 LRRC55Q6ZSA7 311 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 SGMS1Q86VZ5 419 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 CPOQ8IVL8 374 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 HERC6Q8IVU3 1022 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 ZNF808Q8N4W9 903 aaPredicted RBP8.51□□□□□ -1.05
NUP54-215ENST00000514313 TRIM5Q9C035 493 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 ZHX3Q9H4I2 956 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 GBA2Q9HCG7 927 aaPredicted RBP8.51□□□□□ -1.05
NUP54-215ENST00000514313 RIC8AQ9NPQ8 531 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 DNAJB11Q9UBS4 358 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 FBXO9Q9UK97 447 aaPredicted RBP8.51□□□□□ -1.05
NUP54-215ENST00000514313 NEU2Q9Y3R4 380 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 CHST2Q9Y4C5 530 aa8.51□□□□□ -1.05
NUP54-215ENST00000514313 J3KTA2 159 aa8.5□□□□□ -1.05
NUP54-215ENST00000514313 GPR42O15529 346 aa8.5□□□□□ -1.05
NUP54-215ENST00000514313 PPIFP30405 207 aaKnown RBP8.5□□□□□ -1.05
NUP54-215ENST00000514313 NTSR1P30989 418 aa8.5□□□□□ -1.05
NUP54-215ENST00000514313 AKT1P31749 480 aa8.5□□□□□ -1.05
NUP54-215ENST00000514313 HHEXQ03014 270 aa8.5□□□□□ -1.05
NUP54-215ENST00000514313 GRM4Q14833 912 aa8.5□□□□□ -1.05
NUP54-215ENST00000514313 BTBD16Q32M84 506 aa8.5□□□□□ -1.05
NUP54-215ENST00000514313 PREPLQ4J6C6 727 aaPredicted RBP8.5□□□□□ -1.05
NUP54-215ENST00000514313 TBC1D10BQ4KMP7 808 aaPredicted RBP8.5□□□□□ -1.05
NUP54-215ENST00000514313 FOXR2Q6PJQ5 311 aa8.5□□□□□ -1.05
NUP54-215ENST00000514313 MAATS1Q7Z4T9 603 aa8.5□□□□□ -1.05
NUP54-215ENST00000514313 CLNKQ7Z7G1 428 aa8.5□□□□□ -1.05
NUP54-215ENST00000514313 PCGF5Q86SE9 256 aa8.5□□□□□ -1.05
NUP54-215ENST00000514313 MAPKAPK5Q8IW41 473 aa8.5□□□□□ -1.05
NUP54-215ENST00000514313 SLC15A3Q8IY34 581 aa8.5□□□□□ -1.05
NUP54-215ENST00000514313 ADGRG5Q8IZF4 528 aa8.5□□□□□ -1.05
NUP54-215ENST00000514313 ZNF668Q96K58 619 aaPredicted RBP8.5□□□□□ -1.05
NUP54-215ENST00000514313 FSCN3Q9NQT6 498 aa8.5□□□□□ -1.05
NUP54-215ENST00000514313 RNF181Q9P0P0 153 aa8.5□□□□□ -1.05
NUP54-215ENST00000514313 EIF2B4Q9UI10 523 aaKnown RBP8.5□□□□□ -1.05
NUP54-215ENST00000514313 PRAMEF33A0A0G2JMD5 474 aa8.49□□□□□ -1.05
NUP54-215ENST00000514313 A0A1W2PS29 197 aa8.49□□□□□ -1.05
NUP54-215ENST00000514313 GOLGA6L6A8MZA4 724 aa8.49□□□□□ -1.05
NUP54-215ENST00000514313 DIRC3C9JPN6 131 aa8.49□□□□□ -1.05
NUP54-215ENST00000514313 AGPSO00116 658 aa8.49□□□□□ -1.05
NUP54-215ENST00000514313 DHHO43323 396 aa8.49□□□□□ -1.05
NUP54-215ENST00000514313 PRAMEF10O60809 474 aa8.49□□□□□ -1.05
NUP54-215ENST00000514313 LMNAP02545 664 aaKnown RBP8.49□□□□□ -1.05
NUP54-215ENST00000514313 BDNFP23560 247 aa8.49□□□□□ -1.05
NUP54-215ENST00000514313 ADORA2AP29274 412 aa8.49□□□□□ -1.05
NUP54-215ENST00000514313 NPTX2P47972 431 aa8.49□□□□□ -1.05
NUP54-215ENST00000514313 PAPOLAP51003 745 aaKnown RBP8.49□□□□□ -1.05
NUP54-215ENST00000514313 G3BP1Q13283 466 aaKnown RBP eCLIP8.49□□□□□ -1.05
NUP54-215ENST00000514313 CD300EQ496F6 205 aaPredicted RBP8.49□□□□□ -1.05
NUP54-215ENST00000514313 RBM20Q5T481 1227 aaKnown RBP8.49□□□□□ -1.05
NUP54-215ENST00000514313 VPS53Q5VIR6 699 aa8.49□□□□□ -1.05
NUP54-215ENST00000514313 ESX1Q8N693 406 aa8.49□□□□□ -1.05
NUP54-215ENST00000514313 SLC30A5Q8TAD4 765 aa8.49□□□□□ -1.05
NUP54-215ENST00000514313 FEZF2Q8TBJ5 459 aa8.49□□□□□ -1.05
NUP54-215ENST00000514313 AFG1LQ8WV93 481 aa8.49□□□□□ -1.05
NUP54-215ENST00000514313 HERVK_113Q902F9 699 aa8.49□□□□□ -1.05
NUP54-215ENST00000514313 SEC62Q99442 399 aaKnown RBP8.49□□□□□ -1.05
NUP54-215ENST00000514313 SEPSECSQ9HD40 501 aaKnown RBP8.49□□□□□ -1.05
NUP54-215ENST00000514313 SSX2IPQ9Y2D8 614 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 135.6 ms