RNA–Protein interactions for RNA: YMR012W

CLU1, Transcript of Subunit of the eukaryotic translation initiation factor 3 (eIF3), yeast

Gene CLU1, Length 3,834 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLU1	YMR012W	UGX2	P32772	223 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	YFL012W	P43580	148 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	YJR146W	P47174	117 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	NHP10	Q03435	203 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	URA5	P13298	226 aa	Known RBP	0.66	□□□□□ -2.3
CLU1	YMR012W	SPO13	P23624	291 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	NUF2	P33895	451 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	YNL019C	P53975	284 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	COF1	Q03048	143 aa	Known RBP	0.66	□□□□□ -2.3
CLU1	YMR012W	YCL048W-A	Q2V2Q2	79 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	MHF2	Q3E829	80 aa		0.66	□□□□□ -2.3
CLU1	YMR012W	YLR462W	O13556	202 aa		0.65	□□□□□ -2.3
CLU1	YMR012W	YBR027C	P38220	110 aa		0.65	□□□□□ -2.3
CLU1	YMR012W	JAC1	P53193	184 aa		0.65	□□□□□ -2.31
CLU1	YMR012W	HPT1	Q04178	221 aa	Known RBP	0.65	□□□□□ -2.31
CLU1	YMR012W	YDR114C	Q04597	100 aa		0.65	□□□□□ -2.31
CLU1	YMR012W	YMR252C	Q04814	134 aa		0.65	□□□□□ -2.31
CLU1	YMR012W	YDL157C	Q12082	118 aa		0.65	□□□□□ -2.31
CLU1	YMR012W	CSF1	Q12150	2958 aa		0.65	□□□□□ -2.31
CLU1	YMR012W	COX8	P04039	78 aa		0.64	□□□□□ -2.31
CLU1	YMR012W	RRT1	P38192	103 aa		0.64	□□□□□ -2.31
CLU1	YMR012W	PHS1	P40857	217 aa		0.64	□□□□□ -2.31
CLU1	YMR012W	YPI1	P43587	155 aa		0.64	□□□□□ -2.31
CLU1	YMR012W	PAC10	P48363	199 aa		0.64	□□□□□ -2.31
CLU1	YMR012W	ARL3	Q02804	198 aa		0.64	□□□□□ -2.31
CLU1	YMR012W	SYM1	Q06563	197 aa		0.64	□□□□□ -2.31
CLU1	YMR012W	MID2	P36027	376 aa		0.64	□□□□□ -2.31
CLU1	YMR012W	SHB17	P36136	271 aa	Known RBP	0.64	□□□□□ -2.31
CLU1	YMR012W	YPT31	P38555	223 aa	Known RBP	0.64	□□□□□ -2.31
CLU1	YMR012W	TEM1	P38987	245 aa		0.64	□□□□□ -2.31
CLU1	YMR012W	YNL010W	P53981	241 aa	Known RBP	0.64	□□□□□ -2.31
CLU1	YMR012W	LCL2	Q08045	131 aa		0.64	□□□□□ -2.31
CLU1	YMR012W	MPD1	Q12404	318 aa	Known RBP	0.64	□□□□□ -2.31
CLU1	YMR012W	Q0017	Q9ZZX8	53 aa		0.64	□□□□□ -2.31
CLU1	YMR012W	ELP6	Q04868	273 aa		0.64	□□□□□ -2.31
CLU1	YMR012W	FRQ1	Q06389	190 aa		0.64	□□□□□ -2.31
CLU1	YMR012W	AGA2	P32781	87 aa		0.63	□□□□□ -2.31
CLU1	YMR012W	YHR180W	P38868	163 aa		0.63	□□□□□ -2.31
CLU1	YMR012W	SMD3	P43321	101 aa	Known RBP	0.63	□□□□□ -2.31
CLU1	YMR012W	KSH1	Q8TGJ3	72 aa		0.63	□□□□□ -2.31
CLU1	YMR012W	SOM1	Q05676	74 aa		0.63	□□□□□ -2.31
CLU1	YMR012W	KEI1	Q06346	221 aa		0.63	□□□□□ -2.31
CLU1	YMR012W	ANT1	Q06497	328 aa		0.63	□□□□□ -2.31
CLU1	YMR012W	YLR099W-A	Q3E798	87 aa		0.63	□□□□□ -2.31
CLU1	YMR012W	RPL9A	P05738	191 aa	Known RBP	0.63	□□□□□ -2.31
CLU1	YMR012W	STF2	P16965	84 aa		0.63	□□□□□ -2.31
CLU1	YMR012W	YJL144W	P47009	104 aa		0.63	□□□□□ -2.31
CLU1	YMR012W	RPL9B	P51401	191 aa	Known RBP	0.63	□□□□□ -2.31
CLU1	YMR012W	MAG1	P22134	296 aa	Known RBP	0.62	□□□□□ -2.31
CLU1	YMR012W	YEL014C	P39999	101 aa		0.62	□□□□□ -2.31
CLU1	YMR012W	GVP36	P40531	326 aa	Known RBP	0.62	□□□□□ -2.31
CLU1	YMR012W	VPS13	Q07878	3144 aa		0.62	□□□□□ -2.31
CLU1	YMR012W	MIC19	P43594	170 aa		0.62	□□□□□ -2.31
CLU1	YMR012W	PGA1	P53896	198 aa		0.62	□□□□□ -2.31
CLU1	YMR012W	TVP15	Q03860	143 aa		0.62	□□□□□ -2.31
CLU1	YMR012W	FIT3	Q08907	204 aa		0.62	□□□□□ -2.31
CLU1	YMR012W	YPR063C	Q12160	140 aa		0.62	□□□□□ -2.31
CLU1	YMR012W	ATP20	Q12233	115 aa		0.62	□□□□□ -2.31
CLU1	YMR012W	YOR376W-A	Q3E805	51 aa		0.62	□□□□□ -2.31
CLU1	YMR012W	LSM12	P38828	187 aa	Known RBP	0.62	□□□□□ -2.31
CLU1	YMR012W	IPT1	P38954	527 aa		0.62	□□□□□ -2.31
CLU1	YMR012W	CCS1	P40202	249 aa	Known RBP	0.62	□□□□□ -2.31
CLU1	YMR012W	RPL33B	P41056	107 aa	Known RBP	0.62	□□□□□ -2.31
CLU1	YMR012W	VMA10	P48836	114 aa	Known RBP	0.62	□□□□□ -2.31
CLU1	YMR012W	COA4	Q05809	96 aa		0.62	□□□□□ -2.31
CLU1	YMR012W	RRT7	Q07829	113 aa		0.62	□□□□□ -2.31
CLU1	YMR012W	YGR240C-A	Q3E786	66 aa		0.62	□□□□□ -2.31
CLU1	YMR012W	YLR236C	A0A023PZG4	107 aa		0.61	□□□□□ -2.31
CLU1	YMR012W	YNL217W	P40152	326 aa		0.61	□□□□□ -2.31
CLU1	YMR012W	YBR298C-A	Q8TGK4	73 aa		0.61	□□□□□ -2.31
CLU1	YMR012W	YFR045W	P43617	309 aa		0.61	□□□□□ -2.31
CLU1	YMR012W	RPL37B	P51402	88 aa	Known RBP	0.61	□□□□□ -2.31
CLU1	YMR012W	RPL22B	P56628	122 aa	Known RBP	0.61	□□□□□ -2.31
CLU1	YMR012W	MRPS8	Q03799	155 aa		0.61	□□□□□ -2.31
CLU1	YMR012W	YEA6	P39953	335 aa		0.61	□□□□□ -2.31
CLU1	YMR012W	YDR366C	P87287	132 aa		0.61	□□□□□ -2.31
CLU1	YMR012W	ATG41	Q12048	136 aa		0.61	□□□□□ -2.31
CLU1	YMR012W	YDL085C-A	Q3E7B7	68 aa	Known RBP	0.61	□□□□□ -2.31
CLU1	YMR012W	YOL085C	Q99345	113 aa		0.61	□□□□□ -2.31
CLU1	YMR012W	BPH1	P25356	2167 aa		0.6	□□□□□ -2.31
CLU1	YMR012W	YHR213W	P0CI67	198 aa		0.6	□□□□□ -2.31
CLU1	YMR012W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	0.6	□□□□□ -2.31	not detected
CLU1	YMR012W	COS8	P38723	381 aa		0.6	□□□□□ -2.31
CLU1	YMR012W	NSE4	P43124	402 aa		0.6	□□□□□ -2.31
CLU1	YMR012W	DID2	P69771	204 aa		0.6	□□□□□ -2.31
CLU1	YMR012W	MET31	Q03081	177 aa		0.6	□□□□□ -2.31
CLU1	YMR012W	YDR010C	Q12426	110 aa		0.6	□□□□□ -2.31
CLU1	YMR012W	SEC59	P20048	519 aa		0.6	□□□□□ -2.31
CLU1	YMR012W	YBR219C	P38317	127 aa		0.6	□□□□□ -2.31
CLU1	YMR012W	ERI1	P62651	68 aa	Known RBP	0.6	□□□□□ -2.31
CLU1	YMR012W	YLR296W	Q05898	108 aa		0.6	□□□□□ -2.31
CLU1	YMR012W	PRM7	Q12459	698 aa		0.6	□□□□□ -2.31
CLU1	YMR012W	KTI11	Q3E840	82 aa		0.6	□□□□□ -2.31
CLU1	YMR012W	YOR268C	Q08734	132 aa		0.6	□□□□□ -2.31
CLU1	YMR012W	YCR099C	P25657	155 aa		0.59	□□□□□ -2.31
CLU1	YMR012W	YER187W	P40102	141 aa		0.59	□□□□□ -2.31
CLU1	YMR012W	YLR307C-A	Q3E825	87 aa		0.59	□□□□□ -2.31
CLU1	YMR012W	DAN1	P47178	298 aa		0.59	□□□□□ -2.31
CLU1	YMR012W	YGR026W	P53217	278 aa		0.59	□□□□□ -2.31
CLU1	YMR012W	NMA1	Q06178	401 aa	Known RBP	0.59	□□□□□ -2.31

Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms