RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W IRC23Q08416 157 aa3.41□□□□□ -1.86
SSH4YKL124W YPL264CQ08980 353 aa3.41□□□□□ -1.86
SSH4YKL124W FEX2Q08991 375 aa3.41□□□□□ -1.86
SSH4YKL124W MDN1Q12019 4910 aaKnown RBP3.41□□□□□ -1.86
SSH4YKL124W AQY1P0CD91 305 aa3.41□□□□□ -1.86
SSH4YKL124W MRS4P23500 304 aa3.41□□□□□ -1.86
SSH4YKL124W FLO5P38894 1075 aa3.41□□□□□ -1.86
SSH4YKL124W SHH3Q04487 196 aa3.41□□□□□ -1.86
SSH4YKL124W TIM18Q08749 192 aa3.41□□□□□ -1.86
SSH4YKL124W URA5P13298 226 aaKnown RBP3.4□□□□□ -1.87
SSH4YKL124W MRPL20P22354 195 aaPredicted RBP3.4□□□□□ -1.87
SSH4YKL124W SRB6P32570 121 aa3.4□□□□□ -1.87
SSH4YKL124W POR2P40478 281 aa3.4□□□□□ -1.87
SSH4YKL124W FEX1Q08913 375 aa3.4□□□□□ -1.87
SSH4YKL124W TSC3Q3E790 80 aa3.4□□□□□ -1.87
SSH4YKL124W MBF1O14467 151 aaKnown RBP3.39□□□□□ -1.87
SSH4YKL124W Q0255P03881 472 aa3.39□□□□□ -1.87
SSH4YKL124W COX10P21592 462 aa3.39□□□□□ -1.87
SSH4YKL124W LDS1P31379 325 aa3.39□□□□□ -1.87
SSH4YKL124W SRP21P32342 167 aa3.39□□□□□ -1.87
SSH4YKL124W AUA1P32450 94 aa3.39□□□□□ -1.87
SSH4YKL124W YRA2P36036 203 aaKnown RBP RIP-Chip data3.39□□□□□ -1.87not detected
SSH4YKL124W SPC25P40014 221 aa3.39□□□□□ -1.87
SSH4YKL124W YGL034CP53186 121 aa3.39□□□□□ -1.87
SSH4YKL124W YGR018CP53211 109 aa3.39□□□□□ -1.87
SSH4YKL124W YMR181CQ03231 154 aa3.39□□□□□ -1.87
SSH4YKL124W YMR090WQ04304 227 aaKnown RBP3.39□□□□□ -1.87
SSH4YKL124W KTI11Q3E840 82 aa3.39□□□□□ -1.87
SSH4YKL124W YBR298C-AQ8TGK4 73 aa3.39□□□□□ -1.87
SSH4YKL124W EMP24P32803 203 aaKnown RBP3.39□□□□□ -1.87
SSH4YKL124W RPB11P38902 120 aa3.39□□□□□ -1.87
SSH4YKL124W TEM1P38987 245 aa3.39□□□□□ -1.87
SSH4YKL124W COA2Q3E823 68 aa3.39□□□□□ -1.87
SSH4YKL124W YHR213W-AQ8TGT4 77 aa3.39□□□□□ -1.87
SSH4YKL124W YCR022CP25620 114 aa3.38□□□□□ -1.87
SSH4YKL124W AVT5P38176 459 aa3.38□□□□□ -1.87
SSH4YKL124W YBR013CP38215 129 aa3.38□□□□□ -1.87
SSH4YKL124W YAR029WP39549 74 aa3.38□□□□□ -1.87
SSH4YKL124W YER181CP40097 107 aa3.38□□□□□ -1.87
SSH4YKL124W GPI2P46961 280 aa3.38□□□□□ -1.87
SSH4YKL124W YJL027CP47063 138 aaPredicted RBP3.38□□□□□ -1.87
SSH4YKL124W CAX4P53223 239 aa3.38□□□□□ -1.87
SSH4YKL124W SCW10Q04951 389 aa3.38□□□□□ -1.87
SSH4YKL124W YPL162CQ12042 273 aa3.38□□□□□ -1.87
SSH4YKL124W POC4Q12245 148 aaPredicted RBP3.38□□□□□ -1.87
SSH4YKL124W YLR412C-AQ3E742 68 aa3.38□□□□□ -1.87
SSH4YKL124W TAR1Q8TGM6 124 aa3.38□□□□□ -1.87
SSH4YKL124W PIS1P06197 220 aaKnown RBP3.37□□□□□ -1.87
SSH4YKL124W MRS3P10566 314 aa3.37□□□□□ -1.87
SSH4YKL124W CKS1P20486 150 aaKnown RBP3.37□□□□□ -1.87
SSH4YKL124W SNF11P38956 169 aa3.37□□□□□ -1.87
SSH4YKL124W YIL059CP40520 121 aa3.37□□□□□ -1.87
SSH4YKL124W TDA4P47153 279 aa3.37□□□□□ -1.87
SSH4YKL124W YMR082CQ04276 118 aa3.37□□□□□ -1.87
SSH4YKL124W USV1Q12132 391 aa3.37□□□□□ -1.87
SSH4YKL124W YPR013CQ12145 317 aa3.37□□□□□ -1.87
SSH4YKL124W YLR146W-AQ2V2P1 62 aa3.37□□□□□ -1.87
SSH4YKL124W RRT7Q07829 113 aa3.36□□□□□ -1.87
SSH4YKL124W RPS25BP0C0T4 108 aaKnown RBP3.36□□□□□ -1.87
SSH4YKL124W SWM2P40342 146 aa3.36□□□□□ -1.87
SSH4YKL124W IMP2P46972 177 aa3.36□□□□□ -1.87
SSH4YKL124W YGL088WP53151 121 aa3.36□□□□□ -1.87
SSH4YKL124W YMR103CQ04436 120 aa3.36□□□□□ -1.87
SSH4YKL124W RPS25AQ3E792 108 aaPredicted RBP3.36□□□□□ -1.87
SSH4YKL124W YHR213WP0CI67 198 aa3.35□□□□□ -1.87
SSH4YKL124W HMRA1P0CY11 126 aa3.35□□□□□ -1.87
SSH4YKL124W YGR269WP40326 108 aa3.35□□□□□ -1.87
SSH4YKL124W FMP41P53889 259 aaKnown RBP3.35□□□□□ -1.87
SSH4YKL124W ATP5P09457 212 aa3.34□□□□□ -1.87
SSH4YKL124W YCR025CP25352 136 aa3.34□□□□□ -1.87
SSH4YKL124W IRC22P40006 225 aa3.34□□□□□ -1.87
SSH4YKL124W MIC27P50945 234 aa3.34□□□□□ -1.87
SSH4YKL124W UPS3Q04006 179 aa3.34□□□□□ -1.87
SSH4YKL124W LSM2P38203 95 aaKnown RBP3.33□□□□□ -1.88
SSH4YKL124W GAT4P40569 121 aa3.33□□□□□ -1.88
SSH4YKL124W COX12Q01519 83 aa3.33□□□□□ -1.88
SSH4YKL124W YNL146C-AQ3E7Z1 64 aa3.33□□□□□ -1.88
SSH4YKL124W AHT1P29589 182 aa3.33□□□□□ -1.88
SSH4YKL124W SFT2P38166 215 aa3.33□□□□□ -1.88
SSH4YKL124W YER134CP40081 178 aa3.33□□□□□ -1.88
SSH4YKL124W YFR045WP43617 309 aa3.33□□□□□ -1.88
SSH4YKL124W DAN1P47178 298 aa3.33□□□□□ -1.88
SSH4YKL124W AYT1Q12226 474 aa3.33□□□□□ -1.88
SSH4YKL124W YCR024C-BQ3E7Z8 88 aa3.33□□□□□ -1.88
SSH4YKL124W RPL23AP0CX41 137 aaKnown RBP3.32□□□□□ -1.88
SSH4YKL124W RPL23BP0CX42 137 aaKnown RBP3.32□□□□□ -1.88
SSH4YKL124W HAP3P13434 144 aa3.32□□□□□ -1.88
SSH4YKL124W QCR9P22289 66 aa3.32□□□□□ -1.88
SSH4YKL124W SKI6P46948 246 aaPredicted RBP3.32□□□□□ -1.88
SSH4YKL124W SEN15Q04675 128 aa3.32□□□□□ -1.88
SSH4YKL124W YOR376W-AQ3E805 51 aa3.32□□□□□ -1.88
SSH4YKL124W YFR032C-BQ8TGU2 87 aa3.32□□□□□ -1.88
SSH4YKL124W HTL1Q9URQ5 78 aa3.32□□□□□ -1.88
SSH4YKL124W YMR316C-AI2HB70 103 aa3.31□□□□□ -1.88
SSH4YKL124W RPB3P16370 318 aaKnown RBP3.31□□□□□ -1.88
SSH4YKL124W RPL16AP26784 199 aaKnown RBP3.31□□□□□ -1.88
SSH4YKL124W YBL059WP34224 193 aa3.31□□□□□ -1.88
SSH4YKL124W PAM17P36147 197 aa3.31□□□□□ -1.88
SSH4YKL124W PHS1P40857 217 aa3.31□□□□□ -1.88
SSH4YKL124W YFR035CP43608 114 aa3.31□□□□□ -1.88
Retrieved 100 of 5,963 RNA–protein pairs in 51.1 ms