RNA–Protein interactions for RNA: YBR263W

SHM1, Transcript of Mitochondrial serine hydroxymethyltransferase, yeast

Gene SHM1, Length 1,473 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHM1	YBR263W	YPR145C-A	Q2V2P0	78 aa		4.24	□□□□□ -1.73
SHM1	YBR263W	PCC1	Q3E833	88 aa		4.24	□□□□□ -1.73
SHM1	YBR263W	MRPL20	P22354	195 aa	Predicted RBP	4.24	□□□□□ -1.73
SHM1	YBR263W	YER135C	P40082	130 aa		4.24	□□□□□ -1.73
SHM1	YBR263W	YMR141C	P40211	102 aa		4.24	□□□□□ -1.73
SHM1	YBR263W	YCH1	P42937	148 aa		4.24	□□□□□ -1.73
SHM1	YBR263W	YMR244W	Q04018	355 aa		4.24	□□□□□ -1.73
SHM1	YBR263W	SRP21	P32342	167 aa		4.23	□□□□□ -1.73
SHM1	YBR263W	YBR090C	P38253	122 aa		4.23	□□□□□ -1.73
SHM1	YBR263W	MIG3	P39943	394 aa		4.23	□□□□□ -1.73
SHM1	YBR263W	GET2	P40056	285 aa		4.23	□□□□□ -1.73
SHM1	YBR263W	APS2	Q00381	147 aa		4.23	□□□□□ -1.73
SHM1	YBR263W	YPL162C	Q12042	273 aa		4.23	□□□□□ -1.73
SHM1	YBR263W	ERG27	Q12452	347 aa	Known RBP	4.23	□□□□□ -1.73
SHM1	YBR263W	PCL2	P25693	308 aa		4.22	□□□□□ -1.73
SHM1	YBR263W	YPT10	P38146	199 aa		4.22	□□□□□ -1.73
SHM1	YBR263W	SPI1	P40092	148 aa		4.22	□□□□□ -1.73
SHM1	YBR263W	DAD4	P69851	72 aa		4.22	□□□□□ -1.73
SHM1	YBR263W	MRPS8	Q03799	155 aa		4.22	□□□□□ -1.73
SHM1	YBR263W	STP4	Q07351	490 aa		4.22	□□□□□ -1.73
SHM1	YBR263W	CCW12	Q12127	133 aa		4.22	□□□□□ -1.73
SHM1	YBR263W	ARO2	P28777	376 aa	Known RBP	4.21	□□□□□ -1.74
SHM1	YBR263W	AUA1	P32450	94 aa		4.21	□□□□□ -1.74
SHM1	YBR263W	NTF2	P33331	125 aa	Known RBP	4.21	□□□□□ -1.74
SHM1	YBR263W	YHR022C	P38763	256 aa		4.21	□□□□□ -1.74
SHM1	YBR263W	GLC8	P41818	229 aa		4.21	□□□□□ -1.74
SHM1	YBR263W	DAD3	P69850	94 aa		4.21	□□□□□ -1.74
SHM1	YBR263W	ATP19	P81451	68 aa		4.21	□□□□□ -1.74
SHM1	YBR263W	NAT3	Q06504	195 aa		4.21	□□□□□ -1.74
SHM1	YBR263W	FMP49	A0A023PZB3	126 aa		4.2	□□□□□ -1.74
SHM1	YBR263W	SAL1	D6W196	494 aa		4.2	□□□□□ -1.74
SHM1	YBR263W	ADH3	P07246	375 aa	Known RBP	4.2	□□□□□ -1.74
SHM1	YBR263W	ATP5	P09457	212 aa		4.2	□□□□□ -1.74
SHM1	YBR263W	FZF1	P32805	299 aa		4.2	□□□□□ -1.74
SHM1	YBR263W	SSS1	P35179	80 aa		4.2	□□□□□ -1.74
SHM1	YBR263W	NRG2	P38082	220 aa		4.2	□□□□□ -1.74
SHM1	YBR263W	MRPS9	P38120	278 aa		4.2	□□□□□ -1.74
SHM1	YBR263W	ABF2	Q02486	183 aa		4.2	□□□□□ -1.74
SHM1	YBR263W	ELC1	Q03071	99 aa		4.2	□□□□□ -1.74
SHM1	YBR263W	YKL183C-A	Q3E765	70 aa		4.2	□□□□□ -1.74
SHM1	YBR263W	YDL085C-A	Q3E7B7	68 aa	Known RBP	4.2	□□□□□ -1.74
SHM1	YBR263W	YOL085C	Q99345	113 aa		4.2	□□□□□ -1.74
SHM1	YBR263W	TIR1	P10863	254 aa		4.19	□□□□□ -1.74
SHM1	YBR263W	CPT1	P17898	393 aa		4.19	□□□□□ -1.74
SHM1	YBR263W	FUN14	P18411	198 aa		4.19	□□□□□ -1.74
SHM1	YBR263W	YFR035C	P43608	114 aa		4.19	□□□□□ -1.74
SHM1	YBR263W	YDR366C	P87287	132 aa		4.19	□□□□□ -1.74
SHM1	YBR263W	COX12	Q01519	83 aa		4.19	□□□□□ -1.74
SHM1	YBR263W	DAD1	Q12248	94 aa		4.19	□□□□□ -1.74
SHM1	YBR263W	YCR075W-A	Q3E830	75 aa		4.19	□□□□□ -1.74
SHM1	YBR263W	ATG8	P38182	117 aa	RIP-Chip data	4.18	□□□□□ -1.74	not detected
SHM1	YBR263W	YOR105W	Q08504	108 aa		4.18	□□□□□ -1.74
SHM1	YBR263W	SMT3	Q12306	101 aa	Known RBP	4.18	□□□□□ -1.74
SHM1	YBR263W	YLR118C	Q12354	227 aa		4.18	□□□□□ -1.74
SHM1	YBR263W	YLR342W-A	Q3E810	57 aa		4.18	□□□□□ -1.74
SHM1	YBR263W	VAR1	P02381	398 aa		4.18	□□□□□ -1.74
SHM1	YBR263W	QRI5	P32344	111 aa		4.18	□□□□□ -1.74
SHM1	YBR263W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	4.18	□□□□□ -1.74	not detected
SHM1	YBR263W	VMA21	P41806	77 aa		4.18	□□□□□ -1.74
SHM1	YBR263W	YFR045W	P43617	309 aa		4.18	□□□□□ -1.74
SHM1	YBR263W	YFR057W	P43625	151 aa		4.18	□□□□□ -1.74
SHM1	YBR263W	CNL1	Q06333	122 aa		4.18	□□□□□ -1.74
SHM1	YBR263W	HSP10	P38910	106 aa		4.17	□□□□□ -1.74
SHM1	YBR263W	DAN1	P47178	298 aa		4.17	□□□□□ -1.74
SHM1	YBR263W	SCW10	Q04951	389 aa		4.17	□□□□□ -1.74
SHM1	YBR263W	RDS3	Q06835	107 aa	Predicted RBP	4.17	□□□□□ -1.74
SHM1	YBR263W	UTP23	Q12339	254 aa	Known RBP	4.17	□□□□□ -1.74
SHM1	YBR263W	RPL2A	P0CX45	254 aa	Known RBP	4.16	□□□□□ -1.74
SHM1	YBR263W	RPL2B	P0CX46	254 aa	Known RBP	4.16	□□□□□ -1.74
SHM1	YBR263W	RPS11A	P0CX47	156 aa	Known RBP	4.16	□□□□□ -1.74
SHM1	YBR263W	RPS11B	P0CX48	156 aa	Known RBP	4.16	□□□□□ -1.74
SHM1	YBR263W	HAP3	P13434	144 aa		4.16	□□□□□ -1.74
SHM1	YBR263W	MRPL31	P14063	131 aa	Predicted RBP	4.16	□□□□□ -1.74
SHM1	YBR263W	PAU15	P40585	124 aa		4.16	□□□□□ -1.74
SHM1	YBR263W	YGL010W	P25338	174 aa		4.15	□□□□□ -1.75
SHM1	YBR263W	MIX23	P38162	196 aa		4.15	□□□□□ -1.75
SHM1	YBR263W	VHS2	P40463	436 aa		4.15	□□□□□ -1.75
SHM1	YBR263W	MGA1	P53050	456 aa		4.15	□□□□□ -1.75
SHM1	YBR263W	TIM22	Q12328	207 aa		4.15	□□□□□ -1.75
SHM1	YBR263W	RPL12A	P0CX53	165 aa	Known RBP	4.14	□□□□□ -1.75
SHM1	YBR263W	RPL12B	P0CX54	165 aa		4.14	□□□□□ -1.75
SHM1	YBR263W	AGA1	P32323	725 aa		4.14	□□□□□ -1.75
SHM1	YBR263W	MRP49	P32388	137 aa		4.14	□□□□□ -1.75
SHM1	YBR263W	UPS3	Q04006	179 aa		4.14	□□□□□ -1.75
SHM1	YBR263W	SEN15	Q04675	128 aa		4.14	□□□□□ -1.75
SHM1	YBR263W	YNR034W-A	Q3E841	98 aa		4.14	□□□□□ -1.75
SHM1	YBR263W	COA6	Q3E846	104 aa		4.14	□□□□□ -1.75
SHM1	YBR263W	Q0255	P03881	472 aa		4.13	□□□□□ -1.75
SHM1	YBR263W	HMRA1	P0CY11	126 aa		4.13	□□□□□ -1.75
SHM1	YBR263W	PAM17	P36147	197 aa		4.13	□□□□□ -1.75
SHM1	YBR263W	RPB11	P38902	120 aa		4.13	□□□□□ -1.75
SHM1	YBR263W	YER076C	P40049	302 aa		4.13	□□□□□ -1.75
SHM1	YBR263W	KEG1	P43614	200 aa		4.13	□□□□□ -1.75
SHM1	YBR263W	CUE4	Q04201	117 aa	Predicted RBP	4.13	□□□□□ -1.75
SHM1	YBR263W	YLR050C	Q12155	161 aa	Known RBP	4.13	□□□□□ -1.75
SHM1	YBR263W	YBR200W-A	Q3E755	54 aa		4.13	□□□□□ -1.75
SHM1	YBR263W	RPS8A	P0CX39	200 aa	Known RBP	4.12	□□□□□ -1.75
SHM1	YBR263W	RPS8B	P0CX40	200 aa	Known RBP	4.12	□□□□□ -1.75
SHM1	YBR263W	YCR001W	P25347	104 aa		4.12	□□□□□ -1.75
SHM1	YBR263W	PAU5	P43575	122 aa		4.12	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 59.7 ms