RNA–Protein interactions for RNA: YBL056W

PTC3, Transcript of Type 2C protein phosphatase (PP2C), yeast

Gene PTC3, Length 1,407 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTC3	YBL056W	THG1	P53215	237 aa	Known RBP	4.71	□□□□□ -1.66
PTC3	YBL056W	SCW10	Q04951	389 aa		4.71	□□□□□ -1.66
PTC3	YBL056W	POR1	P04840	283 aa	Known RBP	4.7	□□□□□ -1.66
PTC3	YBL056W	RPL27A	P0C2H6	136 aa	Known RBP	4.7	□□□□□ -1.66
PTC3	YBL056W	RPL16B	P26785	198 aa	Known RBP	4.7	□□□□□ -1.66
PTC3	YBL056W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	4.7	□□□□□ -1.66	not detected
PTC3	YBL056W	YHR140W	P38842	239 aa		4.7	□□□□□ -1.66
PTC3	YBL056W	RRT13	P40042	185 aa		4.7	□□□□□ -1.66
PTC3	YBL056W	SDS23	P53172	527 aa		4.7	□□□□□ -1.66
PTC3	YBL056W	YDR366C	P87287	132 aa		4.7	□□□□□ -1.66
PTC3	YBL056W	GPI19	Q04082	140 aa		4.7	□□□□□ -1.66
PTC3	YBL056W	RDS3	Q06835	107 aa	Predicted RBP	4.7	□□□□□ -1.66
PTC3	YBL056W	TMA17	Q12513	150 aa		4.7	□□□□□ -1.66
PTC3	YBL056W	YCR024C-B	Q3E7Z8	88 aa		4.7	□□□□□ -1.66
PTC3	YBL056W	ZRT1	P32804	376 aa		4.69	□□□□□ -1.66
PTC3	YBL056W	SUR2	P38992	349 aa		4.69	□□□□□ -1.66
PTC3	YBL056W	GTO3	Q04806	366 aa		4.69	□□□□□ -1.66
PTC3	YBL056W	RPS22B	Q3E7Y3	130 aa	Known RBP	4.69	□□□□□ -1.66
PTC3	YBL056W	RPL23A	P0CX41	137 aa	Known RBP	4.68	□□□□□ -1.66
PTC3	YBL056W	RPL23B	P0CX42	137 aa	Known RBP	4.68	□□□□□ -1.66
PTC3	YBL056W	POM33	Q12164	279 aa		4.68	□□□□□ -1.66
PTC3	YBL056W	SEC4	P07560	215 aa	Known RBP	4.67	□□□□□ -1.66
PTC3	YBL056W	FRS1	P15624	595 aa	Known RBP	4.67	□□□□□ -1.66
PTC3	YBL056W	YCR001W	P25347	104 aa		4.67	□□□□□ -1.66
PTC3	YBL056W	SDH8	P38345	138 aa		4.67	□□□□□ -1.66
PTC3	YBL056W	URM1	P40554	99 aa	Predicted RBP	4.67	□□□□□ -1.66
PTC3	YBL056W	YCH1	P42937	148 aa		4.67	□□□□□ -1.66
PTC3	YBL056W	AIM34	Q03673	198 aa		4.67	□□□□□ -1.66
PTC3	YBL056W	VAM10	Q08474	114 aa		4.67	□□□□□ -1.66
PTC3	YBL056W	FSF1	Q12029	327 aa	Known RBP	4.67	□□□□□ -1.66
PTC3	YBL056W	YKR032W	P36127	104 aa		4.66	□□□□□ -1.66
PTC3	YBL056W	YGR149W	P48236	432 aa		4.66	□□□□□ -1.66
PTC3	YBL056W	YPS5	P53057	165 aa		4.66	□□□□□ -1.66
PTC3	YBL056W	CYT2	Q00873	224 aa		4.66	□□□□□ -1.66
PTC3	YBL056W	DXO1	Q06349	442 aa		4.66	□□□□□ -1.66
PTC3	YBL056W	PET8	P38921	284 aa		4.65	□□□□□ -1.66
PTC3	YBL056W	ARL3	Q02804	198 aa		4.65	□□□□□ -1.66
PTC3	YBL056W	YCR023C	P25351	611 aa		4.64	□□□□□ -1.67
PTC3	YBL056W	ELF1	P36053	145 aa		4.64	□□□□□ -1.67
PTC3	YBL056W	SGF11	Q03067	99 aa		4.64	□□□□□ -1.67
PTC3	YBL056W	YLR042C	Q07990	161 aa		4.64	□□□□□ -1.67
PTC3	YBL056W	YCR075W-A	Q3E830	75 aa		4.64	□□□□□ -1.67
PTC3	YBL056W	YBR126W-A	Q8TGU7	68 aa		4.64	□□□□□ -1.67
PTC3	YBL056W	RPS8A	P0CX39	200 aa	Known RBP	4.63	□□□□□ -1.67
PTC3	YBL056W	RPS8B	P0CX40	200 aa	Known RBP	4.63	□□□□□ -1.67
PTC3	YBL056W	PCL2	P25693	308 aa		4.63	□□□□□ -1.67
PTC3	YBL056W	MRPL28	P36527	147 aa		4.63	□□□□□ -1.67
PTC3	YBL056W	TVP18	Q04767	167 aa		4.63	□□□□□ -1.67
PTC3	YBL056W	ATP16	Q12165	160 aa		4.63	□□□□□ -1.67
PTC3	YBL056W	WIP1	Q2V2P8	89 aa		4.63	□□□□□ -1.67
PTC3	YBL056W	DIF1	O13577	133 aa		4.63	□□□□□ -1.67
PTC3	YBL056W	RPL42A	P0CX27	106 aa	Known RBP	4.63	□□□□□ -1.67
PTC3	YBL056W	RPL42B	P0CX28	106 aa	Known RBP	4.63	□□□□□ -1.67
PTC3	YBL056W	KTI12	P34253	313 aa	Known RBP	4.63	□□□□□ -1.67
PTC3	YBL056W	KRE9	P39005	276 aa		4.63	□□□□□ -1.67
PTC3	YBL056W	YNL217W	P40152	326 aa		4.63	□□□□□ -1.67
PTC3	YBL056W	HAL1	Q01766	294 aa		4.63	□□□□□ -1.67
PTC3	YBL056W	YNL200C	P40165	246 aa	Known RBP	4.62	□□□□□ -1.67
PTC3	YBL056W	YGR240C-A	Q3E786	66 aa		4.62	□□□□□ -1.67
PTC3	YBL056W	YIL014C-A	Q02598	104 aa		4.61	□□□□□ -1.67
PTC3	YBL056W	SAL1	D6W196	494 aa		4.6	□□□□□ -1.67
PTC3	YBL056W	GSP1	P32835	219 aa	Known RBP	4.6	□□□□□ -1.67
PTC3	YBL056W	GSP2	P32836	220 aa	Known RBP	4.6	□□□□□ -1.67
PTC3	YBL056W	YGL118C	P53132	145 aa		4.6	□□□□□ -1.67
PTC3	YBL056W	ATP23	P53722	227 aa		4.6	□□□□□ -1.67
PTC3	YBL056W	MGR2	Q02889	113 aa		4.6	□□□□□ -1.67
PTC3	YBL056W	DGA1	Q08650	418 aa		4.6	□□□□□ -1.67
PTC3	YBL056W	TMA7	Q3E764	64 aa	Known RBP	4.6	□□□□□ -1.67
PTC3	YBL056W	YBR182C-A	Q8TGU6	64 aa		4.6	□□□□□ -1.67
PTC3	YBL056W	PFY1	P07274	126 aa		4.59	□□□□□ -1.67
PTC3	YBL056W	TEM1	P38987	245 aa		4.59	□□□□□ -1.67
PTC3	YBL056W	SEC72	P39742	193 aa	Known RBP	4.59	□□□□□ -1.67
PTC3	YBL056W	YER076C	P40049	302 aa		4.59	□□□□□ -1.67
PTC3	YBL056W	YER134C	P40081	178 aa		4.59	□□□□□ -1.67
PTC3	YBL056W	DCV1	P43595	202 aa		4.59	□□□□□ -1.67
PTC3	YBL056W	UBC5	P15732	148 aa		4.58	□□□□□ -1.68
PTC3	YBL056W	PRE1	P22141	198 aa	Known RBP	4.58	□□□□□ -1.68
PTC3	YBL056W	YPT53	P36019	220 aa		4.58	□□□□□ -1.68
PTC3	YBL056W	CDC40	P40968	455 aa	Predicted RBP	4.58	□□□□□ -1.68
PTC3	YBL056W	CUE4	Q04201	117 aa	Predicted RBP	4.58	□□□□□ -1.68
PTC3	YBL056W	YPR014C	Q6B0W2	109 aa		4.58	□□□□□ -1.68
PTC3	YBL056W	AQY1	P0CD91	305 aa		4.57	□□□□□ -1.68
PTC3	YBL056W	SSS1	P35179	80 aa		4.57	□□□□□ -1.68
PTC3	YBL056W	GLO1	P50107	326 aa		4.57	□□□□□ -1.68
PTC3	YBL056W	CRC1	Q12289	327 aa		4.57	□□□□□ -1.68
PTC3	YBL056W	CMC2	Q3E7A4	109 aa		4.57	□□□□□ -1.68
PTC3	YBL056W	YKR070W	P36151	352 aa	Known RBP	4.56	□□□□□ -1.68
PTC3	YBL056W	OST3	P48439	350 aa		4.56	□□□□□ -1.68
PTC3	YBL056W	PMP3	P87284	55 aa		4.56	□□□□□ -1.68
PTC3	YBL056W	FCF1	Q05498	189 aa	Predicted RBP	4.56	□□□□□ -1.68
PTC3	YBL056W	MDN1	Q12019	4910 aa	Known RBP	4.56	□□□□□ -1.68
PTC3	YBL056W	YJL028W	P47062	111 aa		4.55	□□□□□ -1.68
PTC3	YBL056W	TOS6	P48560	102 aa		4.55	□□□□□ -1.68
PTC3	YBL056W	SEN15	Q04675	128 aa		4.55	□□□□□ -1.68
PTC3	YBL056W	ERG27	Q12452	347 aa	Known RBP	4.55	□□□□□ -1.68
PTC3	YBL056W	MRP49	P32388	137 aa		4.55	□□□□□ -1.68
PTC3	YBL056W	RPR2	P40571	144 aa		4.55	□□□□□ -1.68
PTC3	YBL056W	YJR146W	P47174	117 aa		4.55	□□□□□ -1.68
PTC3	YBL056W	YDR042C	Q03205	200 aa		4.55	□□□□□ -1.68
PTC3	YBL056W	RPL16A	P26784	199 aa	Known RBP	4.54	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 112.8 ms