RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 SPECC1L-ADORA2AF8WAN1 911 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 ATP2C2O75185 946 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 PFKLP17858 780 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 CTHP32929 405 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 PDE6CP51160 858 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 CCR3P51677 355 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 SDHAF4Q5VUM1 108 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 TXNDC8Q6A555 127 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 SYNPOQ8N3V7 929 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 ZBTB44Q8NCP5 570 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 PARD3BQ8TEW8 1205 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 USP13Q92995 863 aaPredicted RBP20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 MYLPFQ96A32 169 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 FAM83CQ9BQN1 747 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 GZF1Q9H116 711 aaPredicted RBP20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 KCTD10Q9H3F6 313 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 GTSE1Q9NYZ3 720 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 PTPRDP23468 1912 aa20.37■□□□□ 0.85
CCDC28A-203ENST00000617445 ANAPC1Q9H1A4 1944 aa20.36■□□□□ 0.85
CCDC28A-203ENST00000617445 TRIM66O15016 1216 aa20.36■□□□□ 0.85
CCDC28A-203ENST00000617445 HCRTO43612 131 aa20.36■□□□□ 0.85
CCDC28A-203ENST00000617445 RPN1P04843 607 aaKnown RBP20.36■□□□□ 0.85
CCDC28A-203ENST00000617445 ANXA13P27216 316 aa20.36■□□□□ 0.85
CCDC28A-203ENST00000617445 GRIK1P39086 918 aa20.36■□□□□ 0.85
CCDC28A-203ENST00000617445 PPP3CCP48454 512 aa20.36■□□□□ 0.85
CCDC28A-203ENST00000617445 MYL6P60660 151 aa20.36■□□□□ 0.85
CCDC28A-203ENST00000617445 PSMC1P62191 440 aaKnown RBP20.36■□□□□ 0.85
CCDC28A-203ENST00000617445 AMPD2Q01433 879 aa20.36■□□□□ 0.85
CCDC28A-203ENST00000617445 CC2D1AQ6P1N0 951 aaPredicted RBP20.36■□□□□ 0.85
CCDC28A-203ENST00000617445 OR6B3Q8NGW1 331 aa20.36■□□□□ 0.85
CCDC28A-203ENST00000617445 CCDC34Q96HJ3 373 aa20.36■□□□□ 0.85
CCDC28A-203ENST00000617445 ZFYVE19Q96K21 471 aa20.36■□□□□ 0.85
CCDC28A-203ENST00000617445 MRPL45Q9BRJ2 306 aaKnown RBP20.36■□□□□ 0.85
CCDC28A-203ENST00000617445 XYLT2Q9H1B5 865 aa20.36■□□□□ 0.85
CCDC28A-203ENST00000617445 GKN1Q9NS71 199 aa20.36■□□□□ 0.85
CCDC28A-203ENST00000617445 KIF26AQ9ULI4 1882 aaPredicted RBP20.36■□□□□ 0.85
CCDC28A-203ENST00000617445 TRAV19A0A0A6YYK7 116 aa20.35■□□□□ 0.85
CCDC28A-203ENST00000617445 IKBKBO14920 756 aa20.35■□□□□ 0.85
CCDC28A-203ENST00000617445 CALUO43852 315 aaPredicted RBP20.35■□□□□ 0.85
CCDC28A-203ENST00000617445 USP17L7P0C7H9 530 aa20.35■□□□□ 0.85
CCDC28A-203ENST00000617445 PTPN1P18031 435 aaKnown RBP20.35■□□□□ 0.85
CCDC28A-203ENST00000617445 BDNFP23560 247 aa20.35■□□□□ 0.85
CCDC28A-203ENST00000617445 NDUFA8P51970 172 aa20.35■□□□□ 0.85
CCDC28A-203ENST00000617445 CYP27A1Q02318 531 aa20.35■□□□□ 0.85
CCDC28A-203ENST00000617445 FAM160A1Q05DH4 1040 aa20.35■□□□□ 0.85
CCDC28A-203ENST00000617445 BIRC3Q13489 604 aa20.35■□□□□ 0.85
CCDC28A-203ENST00000617445 SPEM1Q8N4L4 309 aa20.35■□□□□ 0.85
CCDC28A-203ENST00000617445 TMC2Q8TDI7 906 aa20.35■□□□□ 0.85
CCDC28A-203ENST00000617445 PCED1BQ96HM7 432 aa20.35■□□□□ 0.85
CCDC28A-203ENST00000617445 C8orf48Q96LL4 319 aa20.35■□□□□ 0.85
CCDC28A-203ENST00000617445 SMG9Q9H0W8 520 aaKnown RBP20.35■□□□□ 0.85
CCDC28A-203ENST00000617445 TRAF3IP3Q9Y228 551 aa20.35■□□□□ 0.85
CCDC28A-203ENST00000617445 FRMD4BQ9Y2L6 1034 aa20.35■□□□□ 0.85
CCDC28A-203ENST00000617445 GPR179Q6PRD1 2367 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 A8MXQ7 604 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 MAPK13O15264 365 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 LILRB5O75023 590 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 RHOBTB3O94955 611 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 C4BPAP04003 597 aaKnown RBP20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 NR3C1P04150 777 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 P4HA1P13674 534 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 CXCL12P48061 93 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 SOX9P48436 509 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 RUNX3Q13761 415 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 PDGFRLQ15198 375 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 CCDC142Q17RM4 750 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 ZNF667Q5HYK9 610 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 DENND5BQ6ZUT9 1274 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 SUMF1Q8NBK3 374 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 RUBCNQ92622 972 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 EXOC4Q96A65 974 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 ELOVL4Q9GZR5 314 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 NXF1Q9UBU9 619 aaKnown RBP20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 CCL26Q9Y258 94 aa20.34■□□□□ 0.85
CCDC28A-203ENST00000617445 LRRIQ3A6PVS8 624 aaPredicted RBP20.33■□□□□ 0.85
CCDC28A-203ENST00000617445 TADA3O75528 432 aa20.33■□□□□ 0.85
CCDC28A-203ENST00000617445 CASP4P49662 377 aa20.33■□□□□ 0.85
CCDC28A-203ENST00000617445 NOP14P78316 857 aaKnown RBP20.33■□□□□ 0.85
CCDC28A-203ENST00000617445 TNK2Q07912 1038 aa20.33■□□□□ 0.85
CCDC28A-203ENST00000617445 NCOA4Q13772 614 aa20.33■□□□□ 0.85
CCDC28A-203ENST00000617445 NFIL3Q16649 462 aa20.33■□□□□ 0.85
CCDC28A-203ENST00000617445 ZNF699Q32M78 642 aa20.33■□□□□ 0.85
CCDC28A-203ENST00000617445 MDH1BQ5I0G3 518 aa20.33■□□□□ 0.85
CCDC28A-203ENST00000617445 TDRD10Q5VZ19 366 aaKnown RBP20.33■□□□□ 0.85
CCDC28A-203ENST00000617445 B3GALNT2Q8NCR0 500 aa20.33■□□□□ 0.85
CCDC28A-203ENST00000617445 STKLD1Q8NE28 680 aa20.33■□□□□ 0.85
CCDC28A-203ENST00000617445 PLEKHO2Q8TD55 490 aa20.33■□□□□ 0.85
CCDC28A-203ENST00000617445 TAF4BQ92750 862 aa20.33■□□□□ 0.85
CCDC28A-203ENST00000617445 TTLL2Q9BWV7 592 aa20.33■□□□□ 0.85
CCDC28A-203ENST00000617445 TRPM5Q9NZQ8 1165 aa20.33■□□□□ 0.85
CCDC28A-203ENST00000617445 PAPSS2O95340 614 aaPredicted RBP20.32■□□□□ 0.84
CCDC28A-203ENST00000617445 CKMP06732 381 aa20.32■□□□□ 0.84
CCDC28A-203ENST00000617445 TCF3P15923 654 aa20.32■□□□□ 0.84
CCDC28A-203ENST00000617445 ENPEPQ07075 957 aa20.32■□□□□ 0.84
CCDC28A-203ENST00000617445 DPYDQ12882 1025 aa20.32■□□□□ 0.84
CCDC28A-203ENST00000617445 BECN1Q14457 450 aa20.32■□□□□ 0.84
CCDC28A-203ENST00000617445 KCNB1Q14721 858 aa20.32■□□□□ 0.84
CCDC28A-203ENST00000617445 SGSM1Q2NKQ1 1148 aa20.32■□□□□ 0.84
CCDC28A-203ENST00000617445 TXNDC11Q6PKC3 985 aa20.32■□□□□ 0.84
CCDC28A-203ENST00000617445 KRBA2Q6ZNG9 492 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms