RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 RHOBTB2Q9BYZ6 727 aa12.3□□□□□ -0.44
YBX3-213ENST00000542641 ZNF518BQ9C0D4 1074 aa12.3□□□□□ -0.44
YBX3-213ENST00000542641 ABCB6Q9NP58 842 aa12.3□□□□□ -0.44
YBX3-213ENST00000542641 MTMR10Q9NXD2 777 aa12.3□□□□□ -0.44
YBX3-213ENST00000542641 AIPL1Q9NZN9 384 aa12.3□□□□□ -0.44
YBX3-213ENST00000542641 DPP7Q9UHL4 492 aa12.3□□□□□ -0.44
YBX3-213ENST00000542641 TSPAN16Q9UKR8 245 aa12.3□□□□□ -0.44
YBX3-213ENST00000542641 HCFC2Q9Y5Z7 792 aa12.3□□□□□ -0.44
YBX3-213ENST00000542641 ATP8B3O60423 1300 aa12.3□□□□□ -0.44
YBX3-213ENST00000542641 SZT2Q5T011 3432 aa12.3□□□□□ -0.44
YBX3-213ENST00000542641 O00370 1275 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 MFAP3LO75121 409 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 AP1G2O75843 785 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 SEC24AO95486 1093 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 FAM200BP0CF97 657 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 FOSL2P15408 326 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 SSTR3P32745 418 aaPredicted RBP12.29□□□□□ -0.44
YBX3-213ENST00000542641 GRIK1P39086 918 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 TUFMP49411 452 aaKnown RBP12.29□□□□□ -0.44
YBX3-213ENST00000542641 ADKP55263 362 aaKnown RBP12.29□□□□□ -0.44
YBX3-213ENST00000542641 GOLGA7BQ2TAP0 167 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 LIN9Q5TKA1 542 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 LCLAT1Q6UWP7 414 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 VSTM1Q6UX27 236 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 CCDC149Q6ZUS6 474 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 IRF2BP2Q7Z5L9 587 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 NOP9Q86U38 636 aaKnown RBP12.29□□□□□ -0.44
YBX3-213ENST00000542641 SCN4BQ8IWT1 228 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 TTC9BQ8N6N2 239 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 EFHBQ8N7U6 833 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 SLC7A14Q8TBB6 771 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 EPS8L1Q8TE68 723 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 HDAC7Q8WUI4 952 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 SYN2Q92777 582 aaPredicted RBP12.29□□□□□ -0.44
YBX3-213ENST00000542641 SMARCD1Q96GM5 515 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 ZSWIM1Q9BR11 485 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 PDCL3Q9H2J4 239 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 CRISPLD1Q9H336 500 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 PLEKHA4Q9H4M7 779 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 MAN1C1Q9NR34 630 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 KRT82Q9NSB4 513 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 IMPACTQ9P2X3 320 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 HSFX1Q9UBD0 423 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 HESX1Q9UBX0 185 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 FBXW11Q9UKB1 542 aa12.29□□□□□ -0.44
YBX3-213ENST00000542641 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.29□□□□□ -0.44
YBX3-213ENST00000542641 GOLGA6L6A8MZA4 724 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 NCK2O43639 380 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 SOAT2O75908 522 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 MICAL2O94851 1124 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 C8AP07357 584 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 SRGAP2BP0DMP2 458 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 HAPLN1P10915 354 aaPredicted RBP12.28□□□□□ -0.44
YBX3-213ENST00000542641 MAGEA11P43364 429 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 ALDH1A3P47895 512 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 SLC8A3P57103 927 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 RPL10AP62906 217 aaKnown RBP12.28□□□□□ -0.44
YBX3-213ENST00000542641 RBM10P98175 930 aaKnown RBP12.28□□□□□ -0.44
YBX3-213ENST00000542641 GOLGA8FQ08AF8 430 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 GOLGA8DPQ0D2H9 430 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 PPM1LQ5SGD2 360 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 TAF3Q5VWG9 929 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 E4F1Q66K89 784 aaPredicted RBP12.28□□□□□ -0.44
YBX3-213ENST00000542641 RTL10Q7L3V2 364 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 ZNF677Q86XU0 584 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 ANKRD52Q8NB46 1076 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 VN1R2Q8NFZ6 395 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 UBA3Q8TBC4 463 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 CASP10Q92851 521 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 DUSP16Q9BY84 665 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 ABHD10Q9NUJ1 306 aa12.28□□□□□ -0.44
YBX3-213ENST00000542641 ZNHIT6Q9NWK9 470 aaKnown RBP12.28□□□□□ -0.44
YBX3-213ENST00000542641 M0QYV0 167 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 TRIM66O15016 1216 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 LINC01565O15544 149 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 LRG1P02750 347 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 SERPING1P05155 500 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 MMEP08473 750 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 CFHP08603 1231 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 SKILP12757 684 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 NPR3P17342 541 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 ANXA13P27216 316 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 HNRNPH3P31942 346 aaKnown RBP12.27□□□□□ -0.45
YBX3-213ENST00000542641 CACNA2D1P54289 1103 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 BCAT1P54687 386 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 MAP3K7CLP57077 242 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 CDR2Q01850 454 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 KLHL30Q0D2K2 578 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 TWF1Q12792 350 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 ADAM15Q13444 863 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 KCNC3Q14003 757 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 CCDC85BQ15834 202 aaPredicted RBP12.27□□□□□ -0.45
YBX3-213ENST00000542641 DDR2Q16832 855 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 DENND1BQ6P3S1 775 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 TMEM184AQ6ZMB5 413 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 EP400NLQ6ZTU2 488 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 CLEC20AQ6ZU45 233 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 TTC30AQ86WT1 665 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 PASD1Q8IV76 773 aa12.27□□□□□ -0.45
YBX3-213ENST00000542641 TC2NQ8N9U0 490 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms