RNA–Protein interactions for RNA: YJR060W

CBF1, Transcript of Basic helix-loop-helix (bHLH) protein, yeastyeast

Gene CBF1, Length 1,056 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CBF1YJR060W PAU11P0CE93 120 aa4.02□□□□□ -1.77
CBF1YJR060W RPS8AP0CX39 200 aaKnown RBP4.02□□□□□ -1.77
CBF1YJR060W RPS8BP0CX40 200 aaKnown RBP4.02□□□□□ -1.77
CBF1YJR060W LSM2P38203 95 aaKnown RBP4.02□□□□□ -1.77
CBF1YJR060W PAU13P38725 120 aa4.02□□□□□ -1.77
CBF1YJR060W GPI2P46961 280 aa4.02□□□□□ -1.77
CBF1YJR060W DSK2P48510 373 aa4.02□□□□□ -1.77
CBF1YJR060W FMP41P53889 259 aaKnown RBP4.02□□□□□ -1.77
CBF1YJR060W PAU10Q03050 120 aa4.02□□□□□ -1.77
CBF1YJR060W PAU20Q08322 120 aa4.02□□□□□ -1.77
CBF1YJR060W FIT2Q08906 153 aa4.02□□□□□ -1.77
CBF1YJR060W YPR013CQ12145 317 aa4.02□□□□□ -1.77
CBF1YJR060W PAU9Q3E770 120 aa4.02□□□□□ -1.77
CBF1YJR060W MRS1P07266 363 aa4.01□□□□□ -1.77
CBF1YJR060W RPS22AP0C0W1 130 aaKnown RBP4.01□□□□□ -1.77
CBF1YJR060W DDI2P0CH63 225 aa4.01□□□□□ -1.77
CBF1YJR060W DDI3P0CH64 225 aa4.01□□□□□ -1.77
CBF1YJR060W RPB3P16370 318 aaKnown RBP4.01□□□□□ -1.77
CBF1YJR060W RPL16AP26784 199 aaKnown RBP4.01□□□□□ -1.77
CBF1YJR060W GLE2P40066 365 aa4.01□□□□□ -1.77
CBF1YJR060W HAC1P41546 238 aa4.01□□□□□ -1.77
CBF1YJR060W YCH1P42937 148 aa4.01□□□□□ -1.77
CBF1YJR060W COX16P47081 118 aa4.01□□□□□ -1.77
CBF1YJR060W SNN1P48232 102 aa4.01□□□□□ -1.77
CBF1YJR060W MST27P53176 234 aa4.01□□□□□ -1.77
CBF1YJR060W YIP3P53633 176 aa4.01□□□□□ -1.77
CBF1YJR060W LOA1Q06508 300 aa4.01□□□□□ -1.77
CBF1YJR060W PPT2Q12036 173 aa4.01□□□□□ -1.77
CBF1YJR060W ATP14Q12349 124 aa4.01□□□□□ -1.77
CBF1YJR060W YPR145C-AQ2V2P0 78 aa4.01□□□□□ -1.77
CBF1YJR060W VMA9Q3E7B6 73 aa4.01□□□□□ -1.77
CBF1YJR060W YNL146C-AQ3E7Z1 64 aa4.01□□□□□ -1.77
CBF1YJR060W SEC59P20048 519 aa4□□□□□ -1.77
CBF1YJR060W RNA15P25299 296 aaPredicted RBP4□□□□□ -1.77
CBF1YJR060W LDS1P31379 325 aa4□□□□□ -1.77
CBF1YJR060W SRB6P32570 121 aa4□□□□□ -1.77
CBF1YJR060W TRS20P38334 175 aa4□□□□□ -1.77
CBF1YJR060W YHR173CP38864 112 aa4□□□□□ -1.77
CBF1YJR060W MIC26P50087 233 aa4□□□□□ -1.77
CBF1YJR060W YPL080CQ02826 108 aa4□□□□□ -1.77
CBF1YJR060W YPR063CQ12160 140 aa4□□□□□ -1.77
CBF1YJR060W YCL021W-AQ96VH3 125 aa4□□□□□ -1.77
CBF1YJR060W RPL14AP36105 138 aaKnown RBP3.99□□□□□ -1.77
CBF1YJR060W ECM33P38248 429 aaKnown RBP3.99□□□□□ -1.77
CBF1YJR060W RPL14BP38754 138 aaKnown RBP3.99□□□□□ -1.77
CBF1YJR060W CYB5P40312 120 aa3.99□□□□□ -1.77
CBF1YJR060W HAM1P47119 197 aaKnown RBP3.99□□□□□ -1.77
CBF1YJR060W MCM22P47167 239 aa3.99□□□□□ -1.77
CBF1YJR060W ZRT1P32804 376 aa3.98□□□□□ -1.77
CBF1YJR060W MRPS8Q03799 155 aa3.98□□□□□ -1.77
CBF1YJR060W RAV2Q03956 351 aa3.98□□□□□ -1.77
CBF1YJR060W YMR244WQ04018 355 aa3.98□□□□□ -1.77
CBF1YJR060W YOL160WQ08321 113 aa3.98□□□□□ -1.77
CBF1YJR060W UTP23Q12339 254 aaKnown RBP3.98□□□□□ -1.77
CBF1YJR060W HTB2P02294 131 aa3.97□□□□□ -1.77
CBF1YJR060W AME1P38313 324 aa3.97□□□□□ -1.77
CBF1YJR060W ATP19P81451 68 aa3.97□□□□□ -1.77
CBF1YJR060W PBA1Q05778 276 aa3.97□□□□□ -1.77
CBF1YJR060W CCW12Q12127 133 aa3.97□□□□□ -1.77
CBF1YJR060W PRM7Q12459 698 aa3.97□□□□□ -1.77
CBF1YJR060W YER078W-AQ3E7A2 54 aa3.97□□□□□ -1.77
CBF1YJR060W YOR011W-AQ3E807 68 aa3.97□□□□□ -1.77
CBF1YJR060W CPT1P17898 393 aa3.96□□□□□ -1.78
CBF1YJR060W YHR022CP38763 256 aa3.96□□□□□ -1.78
CBF1YJR060W POG1P40473 351 aa3.96□□□□□ -1.78
CBF1YJR060W PHS1P40857 217 aa3.96□□□□□ -1.78
CBF1YJR060W YJR085CP47131 105 aaKnown RBP3.96□□□□□ -1.78
CBF1YJR060W COX12Q01519 83 aa3.96□□□□□ -1.78
CBF1YJR060W PCC1Q3E833 88 aa3.96□□□□□ -1.78
CBF1YJR060W HHF1P02309 103 aaKnown RBP3.95□□□□□ -1.78
CBF1YJR060W RPL23AP0CX41 137 aaKnown RBP3.95□□□□□ -1.78
CBF1YJR060W RPL23BP0CX42 137 aaKnown RBP3.95□□□□□ -1.78
CBF1YJR060W RPL2AP0CX45 254 aaKnown RBP3.95□□□□□ -1.78
CBF1YJR060W RPL2BP0CX46 254 aaKnown RBP3.95□□□□□ -1.78
CBF1YJR060W PRE5P40302 234 aaKnown RBP3.95□□□□□ -1.78
CBF1YJR060W TOM7P53507 60 aa3.95□□□□□ -1.78
CBF1YJR060W YOR105WQ08504 108 aa3.95□□□□□ -1.78
CBF1YJR060W DAD1Q12248 94 aa3.95□□□□□ -1.78
CBF1YJR060W ERV2Q12284 196 aa3.95□□□□□ -1.78
CBF1YJR060W YLR342W-AQ3E810 57 aa3.95□□□□□ -1.78
CBF1YJR060W AUA1P32450 94 aa3.94□□□□□ -1.78
CBF1YJR060W SPI1P40092 148 aa3.94□□□□□ -1.78
CBF1YJR060W YFR057WP43625 151 aa3.94□□□□□ -1.78
CBF1YJR060W TIM21P53220 239 aa3.94□□□□□ -1.78
CBF1YJR060W RPS11AP0CX47 156 aaKnown RBP3.93□□□□□ -1.78
CBF1YJR060W RPS11BP0CX48 156 aaKnown RBP3.93□□□□□ -1.78
CBF1YJR060W TIR1P10863 254 aa3.93□□□□□ -1.78
CBF1YJR060W POF1P25576 258 aa3.93□□□□□ -1.78
CBF1YJR060W YRA2P36036 203 aaKnown RBP RIP-Chip data3.93□□□□□ -1.78not detected
CBF1YJR060W MRPS9P38120 278 aa3.93□□□□□ -1.78
CBF1YJR060W MIG3P39943 394 aa3.93□□□□□ -1.78
CBF1YJR060W YER135CP40082 130 aa3.93□□□□□ -1.78
CBF1YJR060W YIL163CP40448 117 aa3.93□□□□□ -1.78
CBF1YJR060W MOG1P47123 218 aa3.93□□□□□ -1.78
CBF1YJR060W YGR025WP53216 100 aa3.93□□□□□ -1.78
CBF1YJR060W UPS3Q04006 179 aa3.93□□□□□ -1.78
CBF1YJR060W YMR253CQ04835 414 aa3.93□□□□□ -1.78
CBF1YJR060W SCW10Q04951 389 aa3.93□□□□□ -1.78
CBF1YJR060W SMT3Q12306 101 aaKnown RBP3.93□□□□□ -1.78
CBF1YJR060W SRP21P32342 167 aa3.92□□□□□ -1.78
Retrieved 100 of 5,963 RNA–protein pairs in 76.1 ms