RNA–Protein interactions for RNA: YFR002W

NIC96, Transcript of Linker nucleoporin component of the nuclear pore complex (NPC), yeastyeast

Gene NIC96, Length 2,520 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIC96YFR002W VPS28Q02767 242 aa1.4□□□□□ -2.19
NIC96YFR002W SHH3Q04487 196 aa1.4□□□□□ -2.19
NIC96YFR002W WIP1Q2V2P8 89 aa1.4□□□□□ -2.19
NIC96YFR002W ATG40Q99325 256 aa1.4□□□□□ -2.19
NIC96YFR002W YLR236CA0A023PZG4 107 aa1.39□□□□□ -2.19
NIC96YFR002W NHP6AP11632 93 aaKnown RBP1.39□□□□□ -2.19
NIC96YFR002W MRPL24P36525 258 aaPredicted RBP1.39□□□□□ -2.19
NIC96YFR002W ERV15P38312 142 aa1.39□□□□□ -2.19
NIC96YFR002W HTD2P38790 280 aaKnown RBP1.39□□□□□ -2.19
NIC96YFR002W YDR366CP87287 132 aa1.39□□□□□ -2.19
NIC96YFR002W RNH202Q05635 350 aa1.39□□□□□ -2.19
NIC96YFR002W YOR381W-AQ3E804 55 aa1.39□□□□□ -2.19
NIC96YFR002W CDC39P25655 2108 aaKnown RBP1.39□□□□□ -2.19
NIC96YFR002W RAS2P01120 322 aaKnown RBP1.39□□□□□ -2.19
NIC96YFR002W PEX4P29340 183 aa1.39□□□□□ -2.19
NIC96YFR002W CIN5P40917 295 aa1.39□□□□□ -2.19
NIC96YFR002W YPD1Q07688 167 aa1.39□□□□□ -2.19
NIC96YFR002W FAS1P07149 2051 aaKnown RBP1.38□□□□□ -2.19
NIC96YFR002W RAD6P06104 172 aa1.38□□□□□ -2.19
NIC96YFR002W YOL162WP0CF19 215 aa1.38□□□□□ -2.19
NIC96YFR002W YOR062CP36025 268 aa1.38□□□□□ -2.19
NIC96YFR002W YNL217WP40152 326 aa1.38□□□□□ -2.19
NIC96YFR002W AYR1P40471 297 aa1.38□□□□□ -2.19
NIC96YFR002W HHO1P53551 258 aa1.38□□□□□ -2.19
NIC96YFR002W BLM10P43583 2143 aa1.38□□□□□ -2.19
NIC96YFR002W MRS4P23500 304 aa1.38□□□□□ -2.19
NIC96YFR002W RPC19P28000 142 aaKnown RBP1.38□□□□□ -2.19
NIC96YFR002W SRP21P32342 167 aa1.38□□□□□ -2.19
NIC96YFR002W HYM1P32464 399 aa1.38□□□□□ -2.19
NIC96YFR002W YHR140WP38842 239 aa1.38□□□□□ -2.19
NIC96YFR002W YEL073CP39974 107 aa1.38□□□□□ -2.19
NIC96YFR002W GPI2P46961 280 aa1.38□□□□□ -2.19
NIC96YFR002W YGR039WP53225 103 aa1.38□□□□□ -2.19
NIC96YFR002W EST3Q03096 181 aa1.38□□□□□ -2.19
NIC96YFR002W CGI121Q03705 181 aaKnown RBP1.38□□□□□ -2.19
NIC96YFR002W RIM9Q04734 239 aa1.38□□□□□ -2.19
NIC96YFR002W ANT1Q06497 328 aa1.38□□□□□ -2.19
NIC96YFR002W SPC3Q12133 184 aa1.38□□□□□ -2.19
NIC96YFR002W TRA1P38811 3744 aa1.38□□□□□ -2.19
NIC96YFR002W UBR1P19812 1950 aa1.38□□□□□ -2.19
NIC96YFR002W DDR48P18899 430 aaKnown RBP1.37□□□□□ -2.19
NIC96YFR002W SHB17P36136 271 aaKnown RBP1.37□□□□□ -2.19
NIC96YFR002W BUD25P85052 153 aa1.37□□□□□ -2.19
NIC96YFR002W YDR278CQ05612 105 aa1.37□□□□□ -2.19
NIC96YFR002W LDB18Q07887 179 aa1.37□□□□□ -2.19
NIC96YFR002W MEU1Q07938 337 aaKnown RBP RIP-Chip data1.37□□□□□ -2.19not detected
NIC96YFR002W YOR015WQ12169 119 aa1.37□□□□□ -2.19
NIC96YFR002W DDI2P0CH63 225 aa1.37□□□□□ -2.19
NIC96YFR002W DDI3P0CH64 225 aa1.37□□□□□ -2.19
NIC96YFR002W UGX2P32772 223 aa1.37□□□□□ -2.19
NIC96YFR002W RPS1AP33442 255 aaKnown RBP1.37□□□□□ -2.19
NIC96YFR002W RPL14AP36105 138 aaKnown RBP1.37□□□□□ -2.19
NIC96YFR002W RPS20P38701 121 aaKnown RBP1.37□□□□□ -2.19
NIC96YFR002W RPL14BP38754 138 aaKnown RBP1.37□□□□□ -2.19
NIC96YFR002W RIO2P40160 425 aaKnown RBP1.37□□□□□ -2.19
NIC96YFR002W ALB1P47019 175 aaPredicted RBP1.37□□□□□ -2.19
NIC96YFR002W YNR064CP53750 290 aa1.37□□□□□ -2.19
NIC96YFR002W LIP1Q03579 150 aa1.37□□□□□ -2.19
NIC96YFR002W ATP14Q12349 124 aa1.37□□□□□ -2.19
NIC96YFR002W EMC6Q12431 108 aa1.37□□□□□ -2.19
NIC96YFR002W FMP49A0A023PZB3 126 aa1.36□□□□□ -2.19
NIC96YFR002W HSP12P22943 109 aaKnown RBP1.36□□□□□ -2.19
NIC96YFR002W MRP49P32388 137 aa1.36□□□□□ -2.19
NIC96YFR002W CLB6P32943 380 aa1.36□□□□□ -2.19
NIC96YFR002W SVP26P38869 228 aa1.36□□□□□ -2.19
NIC96YFR002W YER135CP40082 130 aa1.36□□□□□ -2.19
NIC96YFR002W SEC11P15367 167 aa1.36□□□□□ -2.19
NIC96YFR002W AHT1P29589 182 aa1.36□□□□□ -2.19
NIC96YFR002W SUI1P32911 108 aaKnown RBP1.36□□□□□ -2.19
NIC96YFR002W LHP1P33399 275 aaKnown RBP1.36□□□□□ -2.19
NIC96YFR002W YPT31P38555 223 aaKnown RBP1.36□□□□□ -2.19
NIC96YFR002W KNH1P50112 268 aa1.36□□□□□ -2.19
NIC96YFR002W POP3P53833 195 aaPredicted RBP1.36□□□□□ -2.19
NIC96YFR002W YNL019CP53975 284 aa1.36□□□□□ -2.19
NIC96YFR002W DML1Q03652 475 aa1.36□□□□□ -2.19
NIC96YFR002W YDR391CQ04170 232 aa1.36□□□□□ -2.19
NIC96YFR002W CNL1Q06333 122 aa1.36□□□□□ -2.19
NIC96YFR002W FRQ1Q06389 190 aa1.36□□□□□ -2.19
NIC96YFR002W RAD28Q12021 506 aa1.36□□□□□ -2.19
NIC96YFR002W YPR013CQ12145 317 aa1.36□□□□□ -2.19
NIC96YFR002W Q0144Q9ZZW2 109 aa1.36□□□□□ -2.19
NIC96YFR002W YHR022CP38763 256 aa1.35□□□□□ -2.19
NIC96YFR002W HPM1P40481 377 aa1.35□□□□□ -2.19
NIC96YFR002W EMC4P53073 190 aa1.35□□□□□ -2.19
NIC96YFR002W THG1P53215 237 aaKnown RBP1.35□□□□□ -2.19
NIC96YFR002W DAD3P69850 94 aa1.35□□□□□ -2.19
NIC96YFR002W CYT2Q00873 224 aa1.35□□□□□ -2.19
NIC96YFR002W UPS1Q05776 175 aa1.35□□□□□ -2.19
NIC96YFR002W SLO1Q3E784 85 aa1.35□□□□□ -2.19
NIC96YFR002W YFR010W-AP0C5N0 62 aa1.35□□□□□ -2.19
NIC96YFR002W RPS1BP23248 255 aaKnown RBP1.35□□□□□ -2.19
NIC96YFR002W YKR070WP36151 352 aaKnown RBP1.35□□□□□ -2.19
NIC96YFR002W YBR209WP38311 105 aa1.35□□□□□ -2.19
NIC96YFR002W YHL018WP38744 120 aaPredicted RBP1.35□□□□□ -2.19
NIC96YFR002W NSE4P43124 402 aa1.35□□□□□ -2.19
NIC96YFR002W PAC10P48363 199 aa1.35□□□□□ -2.19
NIC96YFR002W CUE4Q04201 117 aaPredicted RBP1.35□□□□□ -2.19
NIC96YFR002W NKP2Q06162 153 aa1.35□□□□□ -2.19
NIC96YFR002W YDL241WQ07738 123 aa1.35□□□□□ -2.19
NIC96YFR002W CSI2Q08054 341 aa1.35□□□□□ -2.19
Retrieved 100 of 5,963 RNA–protein pairs in 31.8 ms