RNA–Protein interactions for RNA: YEL012W

UBC8, Transcript of Ubiquitin-conjugating enzyme that regulates gluconeogenesis, yeast

Gene UBC8, Length 657 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC8	YEL012W	UBC7	Q02159	165 aa		2.89	□□□□□ -1.95
UBC8	YEL012W	ECM19	Q06011	112 aa		2.89	□□□□□ -1.95
UBC8	YEL012W	DFM1	Q12743	341 aa	Known RBP	2.89	□□□□□ -1.95
UBC8	YEL012W	RPS25A	Q3E792	108 aa	Predicted RBP	2.89	□□□□□ -1.95
UBC8	YEL012W	CMC2	Q3E7A4	109 aa		2.89	□□□□□ -1.95
UBC8	YEL012W	CUP2	P15315	225 aa		2.88	□□□□□ -1.95
UBC8	YEL012W	YCR025C	P25352	136 aa		2.88	□□□□□ -1.95
UBC8	YEL012W	POP7	P38291	140 aa		2.88	□□□□□ -1.95
UBC8	YEL012W	MCM22	P47167	239 aa		2.88	□□□□□ -1.95
UBC8	YEL012W	MRPS17	Q03246	237 aa	Predicted RBP	2.88	□□□□□ -1.95
UBC8	YEL012W	YPL264C	Q08980	353 aa		2.88	□□□□□ -1.95
UBC8	YEL012W	ARG80	P07249	177 aa		2.87	□□□□□ -1.95
UBC8	YEL012W	COX10	P21592	462 aa		2.87	□□□□□ -1.95
UBC8	YEL012W	YCR016W	P25617	290 aa	Known RBP	2.87	□□□□□ -1.95
UBC8	YEL012W	SPT4	P32914	102 aa	Predicted RBP	2.87	□□□□□ -1.95
UBC8	YEL012W	MRPL3	P36516	390 aa		2.87	□□□□□ -1.95
UBC8	YEL012W	MRPS9	P38120	278 aa		2.87	□□□□□ -1.95
UBC8	YEL012W	SFT2	P38166	215 aa		2.87	□□□□□ -1.95
UBC8	YEL012W	IPI1	P38803	334 aa	Predicted RBP	2.87	□□□□□ -1.95
UBC8	YEL012W	YNL200C	P40165	246 aa	Known RBP	2.87	□□□□□ -1.95
UBC8	YEL012W	LSM7	P53905	115 aa	Known RBP	2.87	□□□□□ -1.95
UBC8	YEL012W	SDH7	Q04401	133 aa		2.87	□□□□□ -1.95
UBC8	YEL012W	YPL162C	Q12042	273 aa		2.87	□□□□□ -1.95
UBC8	YEL012W	YHR022C	P38763	256 aa		2.86	□□□□□ -1.95
UBC8	YEL012W	YGR269W	P40326	108 aa		2.86	□□□□□ -1.95
UBC8	YEL012W	TPN1	P53099	579 aa		2.86	□□□□□ -1.95
UBC8	YEL012W	PDR17	P53844	350 aa		2.86	□□□□□ -1.95
UBC8	YEL012W	LOA1	Q06508	300 aa		2.86	□□□□□ -1.95
UBC8	YEL012W	RRT7	Q07829	113 aa		2.86	□□□□□ -1.95
UBC8	YEL012W	POM33	Q12164	279 aa		2.86	□□□□□ -1.95
UBC8	YEL012W	UTP11	P34247	250 aa	Predicted RBP	2.85	□□□□□ -1.95
UBC8	YEL012W	HUA1	P40325	198 aa		2.85	□□□□□ -1.95
UBC8	YEL012W	YAR1	P46683	200 aa		2.85	□□□□□ -1.95
UBC8	YEL012W	HIT1	P46973	164 aa		2.85	□□□□□ -1.95
UBC8	YEL012W	TOM7	P53507	60 aa		2.85	□□□□□ -1.95
UBC8	YEL012W	YML108W	Q03759	105 aa		2.85	□□□□□ -1.95
UBC8	YEL012W	YMR090W	Q04304	227 aa	Known RBP	2.85	□□□□□ -1.95
UBC8	YEL012W	SHH3	Q04487	196 aa		2.85	□□□□□ -1.95
UBC8	YEL012W	DPP1	Q05521	289 aa		2.85	□□□□□ -1.95
UBC8	YEL012W	CTR3	Q06686	241 aa		2.85	□□□□□ -1.95
UBC8	YEL012W	YAL063C-A	Q3E791	96 aa		2.85	□□□□□ -1.95
UBC8	YEL012W	GCN3	P14741	305 aa		2.84	□□□□□ -1.95
UBC8	YEL012W	SPT14	P32363	452 aa		2.84	□□□□□ -1.95
UBC8	YEL012W	FPR2	P32472	135 aa		2.84	□□□□□ -1.95
UBC8	YEL012W	SUA5	P32579	426 aa		2.84	□□□□□ -1.95
UBC8	YEL012W	MID2	P36027	376 aa		2.84	□□□□□ -1.95
UBC8	YEL012W	IRC22	P40006	225 aa		2.84	□□□□□ -1.95
UBC8	YEL012W	DSK2	P48510	373 aa		2.84	□□□□□ -1.95
UBC8	YEL012W	ORM1	P53224	222 aa		2.84	□□□□□ -1.95
UBC8	YEL012W	GIM5	Q04493	163 aa		2.84	□□□□□ -1.95
UBC8	YEL012W	CCW12	Q12127	133 aa		2.84	□□□□□ -1.95
UBC8	YEL012W	YPR063C	Q12160	140 aa		2.84	□□□□□ -1.95
UBC8	YEL012W	SWM2	P40342	146 aa		2.83	□□□□□ -1.96
UBC8	YEL012W	YIA6	P40556	373 aa		2.83	□□□□□ -1.96
UBC8	YEL012W	MIC27	P50945	234 aa		2.83	□□□□□ -1.96
UBC8	YEL012W	YMR007W	Q03675	126 aa		2.83	□□□□□ -1.96
UBC8	YEL012W	YDL012C	Q12489	107 aa		2.83	□□□□□ -1.96
UBC8	YEL012W	YLL066W-B	Q8TGJ7	56 aa		2.83	□□□□□ -1.96
UBC8	YEL012W	SPS2	P08459	502 aa		2.82	□□□□□ -1.96
UBC8	YEL012W	POF1	P25576	258 aa		2.82	□□□□□ -1.96
UBC8	YEL012W	YBR242W	P38331	238 aa		2.82	□□□□□ -1.96
UBC8	YEL012W	SLM6	P38343	150 aa		2.82	□□□□□ -1.96
UBC8	YEL012W	SUR2	P38992	349 aa		2.82	□□□□□ -1.96
UBC8	YEL012W	PLP1	Q04004	230 aa		2.82	□□□□□ -1.96
UBC8	YEL012W	YMR082C	Q04276	118 aa		2.82	□□□□□ -1.96
UBC8	YEL012W	PRR2	Q12310	699 aa		2.82	□□□□□ -1.96
UBC8	YEL012W	YCR075W-A	Q3E830	75 aa		2.82	□□□□□ -1.96
UBC8	YEL012W	YJL197C-A	P0C5P0	93 aa		2.81	□□□□□ -1.96
UBC8	YEL012W	DDI2	P0CH63	225 aa		2.81	□□□□□ -1.96
UBC8	YEL012W	DDI3	P0CH64	225 aa		2.81	□□□□□ -1.96
UBC8	YEL012W	NHP6B	P11633	99 aa	Known RBP	2.81	□□□□□ -1.96
UBC8	YEL012W	RPB3	P16370	318 aa	Known RBP	2.81	□□□□□ -1.96
UBC8	YEL012W	AIM29	P36154	155 aa		2.81	□□□□□ -1.96
UBC8	YEL012W	DER1	P38307	211 aa		2.81	□□□□□ -1.96
UBC8	YEL012W	YEA6	P39953	335 aa		2.81	□□□□□ -1.96
UBC8	YEL012W	YGL118C	P53132	145 aa		2.81	□□□□□ -1.96
UBC8	YEL012W	SMD1	Q02260	146 aa	Predicted RBP	2.81	□□□□□ -1.96
UBC8	YEL012W	TMA23	Q03525	211 aa		2.81	□□□□□ -1.96
UBC8	YEL012W	RRT15	Q3E811	62 aa		2.81	□□□□□ -1.96
UBC8	YEL012W	PUT1	P09368	476 aa		2.8	□□□□□ -1.96
UBC8	YEL012W	EMP24	P32803	203 aa	Known RBP	2.8	□□□□□ -1.96
UBC8	YEL012W	ASP1	P38986	381 aa	Predicted RBP	2.8	□□□□□ -1.96
UBC8	YEL012W	YMR141C	P40211	102 aa		2.8	□□□□□ -1.96
UBC8	YEL012W	YKE4	P40544	346 aa		2.8	□□□□□ -1.96
UBC8	YEL012W	CIN5	P40917	295 aa		2.8	□□□□□ -1.96
UBC8	YEL012W	MRPL50	P53724	139 aa		2.8	□□□□□ -1.96
UBC8	YEL012W	SNO1	Q03144	224 aa		2.8	□□□□□ -1.96
UBC8	YEL012W	ATC1	Q04005	294 aa		2.8	□□□□□ -1.96
UBC8	YEL012W	GTO3	Q04806	366 aa		2.8	□□□□□ -1.96
UBC8	YEL012W	YPR145C-A	Q2V2P0	78 aa		2.8	□□□□□ -1.96
UBC8	YEL012W	YLR146W-A	Q2V2P1	62 aa		2.8	□□□□□ -1.96
UBC8	YEL012W	YHR213W-A	Q8TGT4	77 aa		2.8	□□□□□ -1.96
UBC8	YEL012W	VAR1	P02381	398 aa		2.79	□□□□□ -1.96
UBC8	YEL012W	Q0255	P03881	472 aa		2.79	□□□□□ -1.96
UBC8	YEL012W	YJR111C	P47148	283 aa	Known RBP	2.79	□□□□□ -1.96
UBC8	YEL012W	TIM21	P53220	239 aa		2.79	□□□□□ -1.96
UBC8	YEL012W	COA4	Q05809	96 aa		2.79	□□□□□ -1.96
UBC8	YEL012W	FIT2	Q08906	153 aa		2.79	□□□□□ -1.96
UBC8	YEL012W	HTB2	P02294	131 aa		2.78	□□□□□ -1.96
UBC8	YEL012W	SPO13	P23624	291 aa		2.78	□□□□□ -1.96

Retrieved 100 of 5,963 RNA–protein pairs in 15.9 ms