RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 IL17AQ16552 155 aa18.21■□□□□ 0.51
VPS29-204ENST00000548259 ANO7Q6IWH7 933 aa18.21■□□□□ 0.51
VPS29-204ENST00000548259 LPCAT2Q7L5N7 544 aa18.21■□□□□ 0.51
VPS29-204ENST00000548259 GPBP1Q86WP2 473 aa18.21■□□□□ 0.51
VPS29-204ENST00000548259 NT5DC4Q86YG4 428 aa18.21■□□□□ 0.51
VPS29-204ENST00000548259 LEO1Q8WVC0 666 aaPredicted RBP18.21■□□□□ 0.51
VPS29-204ENST00000548259 CALML4Q96GE6 196 aa18.21■□□□□ 0.51
VPS29-204ENST00000548259 CNOT6LQ96LI5 555 aaKnown RBP18.21■□□□□ 0.51
VPS29-204ENST00000548259 PNMA5Q96PV4 448 aa18.21■□□□□ 0.51
VPS29-204ENST00000548259 REEP2Q9BRK0 252 aa18.21■□□□□ 0.51
VPS29-204ENST00000548259 PI4K2AQ9BTU6 479 aa18.21■□□□□ 0.51
VPS29-204ENST00000548259 SCNM1Q9BWG6 230 aa18.21■□□□□ 0.51
VPS29-204ENST00000548259 ZHX3Q9H4I2 956 aa18.21■□□□□ 0.51
VPS29-204ENST00000548259 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.21■□□□□ 0.51
VPS29-204ENST00000548259 EVLQ9UI08 416 aaPredicted RBP18.21■□□□□ 0.51
VPS29-204ENST00000548259 NPHP3-ACAD11A0A0J9YXS1 232 aa18.2■□□□□ 0.5
VPS29-204ENST00000548259 MAP3K13O43283 966 aa18.2■□□□□ 0.5
VPS29-204ENST00000548259 TBCAO75347 108 aaKnown RBP18.2■□□□□ 0.5
VPS29-204ENST00000548259 IL18RAPO95256 599 aa18.2■□□□□ 0.5
VPS29-204ENST00000548259 SPINK2P20155 84 aa18.2■□□□□ 0.5
VPS29-204ENST00000548259 ATP2C1P98194 919 aaPredicted RBP18.2■□□□□ 0.5
VPS29-204ENST00000548259 MYL7Q01449 175 aa18.2■□□□□ 0.5
VPS29-204ENST00000548259 BYSLQ13895 437 aaKnown RBP18.2■□□□□ 0.5
VPS29-204ENST00000548259 ZNF77Q15935 545 aa18.2■□□□□ 0.5
VPS29-204ENST00000548259 ZCCHC14Q8WYQ9 949 aaKnown RBP18.2■□□□□ 0.5
VPS29-204ENST00000548259 PIGKQ92643 395 aa18.2■□□□□ 0.5
VPS29-204ENST00000548259 TPSD1Q9BZJ3 242 aa18.2■□□□□ 0.5
VPS29-204ENST00000548259 INVSQ9Y283 1065 aa18.2■□□□□ 0.5
VPS29-204ENST00000548259 WNT6Q9Y6F9 365 aa18.2■□□□□ 0.5
VPS29-204ENST00000548259 IGF2RP11717 2491 aa18.2■□□□□ 0.5
VPS29-204ENST00000548259 VWA3AA6NCI4 1184 aa18.19■□□□□ 0.5
VPS29-204ENST00000548259 HUS1O60921 280 aa18.19■□□□□ 0.5
VPS29-204ENST00000548259 NOL4O94818 638 aa18.19■□□□□ 0.5
VPS29-204ENST00000548259 LAMA1P25391 3075 aa18.19■□□□□ 0.5
VPS29-204ENST00000548259 EML3Q32P44 896 aa18.19■□□□□ 0.5
VPS29-204ENST00000548259 ARSHQ5FYA8 562 aa18.19■□□□□ 0.5
VPS29-204ENST00000548259 ARL6IP4Q66PJ3 421 aaKnown RBP18.19■□□□□ 0.5
VPS29-204ENST00000548259 RASSF3Q86WH2 238 aa18.19■□□□□ 0.5
VPS29-204ENST00000548259 TTC30AQ86WT1 665 aa18.19■□□□□ 0.5
VPS29-204ENST00000548259 RASSF8Q8NHQ8 419 aa18.19■□□□□ 0.5
VPS29-204ENST00000548259 USP33Q8TEY7 942 aa18.19■□□□□ 0.5
VPS29-204ENST00000548259 MYRFLQ96LU7 910 aa18.19■□□□□ 0.5
VPS29-204ENST00000548259 AK8Q96MA6 479 aa18.19■□□□□ 0.5
VPS29-204ENST00000548259 ACBD6Q9BR61 282 aa18.19■□□□□ 0.5
VPS29-204ENST00000548259 AGO2Q9UKV8 859 aaKnown RBP18.19■□□□□ 0.5
VPS29-204ENST00000548259 CIZ1Q9ULV3 898 aaPredicted RBP18.19■□□□□ 0.5
VPS29-204ENST00000548259 WASF3Q9UPY6 502 aa18.19■□□□□ 0.5
VPS29-204ENST00000548259 NEUROG3Q9Y4Z2 214 aa18.19■□□□□ 0.5
VPS29-204ENST00000548259 SRRM3A6NNA2 597 aaPredicted RBP18.18■□□□□ 0.5
VPS29-204ENST00000548259 TULP1O00294 542 aaPredicted RBP18.18■□□□□ 0.5
VPS29-204ENST00000548259 CDX4O14627 284 aaPredicted RBP18.18■□□□□ 0.5
VPS29-204ENST00000548259 UBA7P41226 1012 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 ZNF131P52739 623 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 ATXN3P54252 364 aaPredicted RBP18.18■□□□□ 0.5
VPS29-204ENST00000548259 IRX4P78413 519 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 MRPS21P82921 87 aaKnown RBP18.18■□□□□ 0.5
VPS29-204ENST00000548259 USP4Q13107 963 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 POSTNQ15063 836 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 DDR2Q16832 855 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 TMEM119Q4V9L6 283 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 C2orf27AQ580R0 203 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 TRIM61Q5EBN2 209 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 NAIF1Q69YI7 327 aaPredicted RBP18.18■□□□□ 0.5
VPS29-204ENST00000548259 MCTP1Q6DN14 999 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 SPATA2LQ8IUW3 424 aaPredicted RBP18.18■□□□□ 0.5
VPS29-204ENST00000548259 EFCAB13Q8IY85 973 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 TMEM86AQ8N2M4 240 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 DEFB124Q8NES8 71 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 SH3RF2Q8TEC5 729 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 GATA6Q92908 595 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 EHD2Q9NZN4 543 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 MMP17Q9ULZ9 603 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 R3HCC1Q9Y3T6 440 aaKnown RBP18.18■□□□□ 0.5
VPS29-204ENST00000548259 ZFYVE26Q68DK2 2539 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 ZZEF1O43149 2961 aa18.18■□□□□ 0.5
VPS29-204ENST00000548259 MYMKA6NI61 221 aa18.17■□□□□ 0.5
VPS29-204ENST00000548259 TNFRSF10BO14763 440 aa18.17■□□□□ 0.5
VPS29-204ENST00000548259 PFKLP17858 780 aa18.17■□□□□ 0.5
VPS29-204ENST00000548259 HDCP19113 662 aa18.17■□□□□ 0.5
VPS29-204ENST00000548259 PCSK1P29120 753 aa18.17■□□□□ 0.5
VPS29-204ENST00000548259 SEC13P55735 322 aa18.17■□□□□ 0.5
VPS29-204ENST00000548259 GTF2BQ00403 316 aa18.17■□□□□ 0.5
VPS29-204ENST00000548259 DHX8Q14562 1220 aaKnown RBP18.17■□□□□ 0.5
VPS29-204ENST00000548259 CRY1Q16526 586 aa18.17■□□□□ 0.5
VPS29-204ENST00000548259 HSF5Q4G112 596 aaPredicted RBP18.17■□□□□ 0.5
VPS29-204ENST00000548259 SPDYCQ5MJ68 293 aa18.17■□□□□ 0.5
VPS29-204ENST00000548259 RIN3Q8TB24 985 aa18.17■□□□□ 0.5
VPS29-204ENST00000548259 SPATA18Q8TC71 538 aa18.17■□□□□ 0.5
VPS29-204ENST00000548259 WHAMMQ8TF30 809 aa18.17■□□□□ 0.5
VPS29-204ENST00000548259 CACTINQ8WUQ7 758 aaKnown RBP18.17■□□□□ 0.5
VPS29-204ENST00000548259 POMGNT1Q8WZA1 660 aa18.17■□□□□ 0.5
VPS29-204ENST00000548259 FUBP3Q96I24 572 aaKnown RBP eCLIP18.17■□□□□ 0.5
VPS29-204ENST00000548259 CYP2S1Q96SQ9 504 aa18.17■□□□□ 0.5
VPS29-204ENST00000548259 POLMQ9NP87 494 aaPredicted RBP18.17■□□□□ 0.5
VPS29-204ENST00000548259 DDX43Q9NXZ2 648 aaKnown RBP18.17■□□□□ 0.5
VPS29-204ENST00000548259 ANKRD11Q6UB99 2663 aaPredicted RBP18.17■□□□□ 0.5
VPS29-204ENST00000548259 H0Y626 953 aa18.16■□□□□ 0.5
VPS29-204ENST00000548259 SLC9A3R1O14745 358 aaPredicted RBP18.16■□□□□ 0.5
VPS29-204ENST00000548259 TRIM16O95361 564 aa18.16■□□□□ 0.5
VPS29-204ENST00000548259 TCF3P15923 654 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 150.9 ms