RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 FAM35AQ86V20 835 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 SCN4BQ8IWT1 228 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 CRYBG2Q8N1P7 616 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 TTC9BQ8N6N2 239 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 EFHBQ8N7U6 833 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 SLC7A14Q8TBB6 771 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 SLC2A14Q8TDB8 520 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 C2orf15Q8WU43 125 aaKnown RBP15.9■□□□□ 0.14
NUP54-213ENST00000513352 CYFIP2Q96F07 1278 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 NUP58Q9BVL2 599 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 B3GNT5Q9BYG0 378 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 DPP7Q9UHL4 492 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.9■□□□□ 0.14
NUP54-213ENST00000513352 PTPRDP23468 1912 aa15.9■□□□□ 0.14
NUP54-213ENST00000513352 SEC24AO95486 1093 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 C8AP07357 584 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 TPM1P09493 284 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 VDRP11473 427 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 CYP2F1P24903 491 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 GNA15P30679 374 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 SSTR3P32745 418 aaPredicted RBP15.89■□□□□ 0.13
NUP54-213ENST00000513352 SOX5P35711 763 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 ARID5AQ03989 594 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 PTK2Q05397 1052 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 GOLGA7BQ2TAP0 167 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 PPM1LQ5SGD2 360 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 PPP1R26Q5T8A7 1209 aaPredicted RBP15.89■□□□□ 0.13
NUP54-213ENST00000513352 LILRA6Q6PI73 481 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 VSTM4Q8IW00 320 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 DRC7Q8IY82 874 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 ZNF397Q8NF99 534 aaPredicted RBP15.89■□□□□ 0.13
NUP54-213ENST00000513352 VN1R2Q8NFZ6 395 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 APOL5Q9BWW9 433 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 ZNF518BQ9C0D4 1074 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 GPR88Q9GZN0 384 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 PLEKHA4Q9H4M7 779 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 KRT82Q9NSB4 513 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 DZANK1Q9NVP4 752 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 YIPF1Q9Y548 306 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 CDH23Q9H251 3354 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 ITIH6Q6UXX5 1313 aa15.89■□□□□ 0.13
NUP54-213ENST00000513352 NCK2O43639 380 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 AP1G2O75843 785 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 VNN2O95498 520 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 GLP2RO95838 553 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 LRG1P02750 347 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 ANXA13P27216 316 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 GRIK1P39086 918 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 ALDH1A3P47895 512 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 ZNF132P52740 706 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 JAM2P57087 298 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 BPIFB4P59827 614 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 TRIM14Q14142 442 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 FAM71AQ8IYT1 594 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 MAFAQ8NHW3 353 aaPredicted RBP15.88■□□□□ 0.13
NUP54-213ENST00000513352 IQCDQ96DY2 449 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 SMARCD1Q96GM5 515 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 FUBP3Q96I24 572 aaKnown RBP eCLIP15.88■□□□□ 0.13
NUP54-213ENST00000513352 CRISPLD1Q9H336 500 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 GRPEL1Q9HAV7 217 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 ABCB6Q9NP58 842 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 HESX1Q9UBX0 185 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 MAFFQ9ULX9 164 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 CNTN6Q9UQ52 1028 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 INSL5Q9Y5Q6 135 aa15.88■□□□□ 0.13
NUP54-213ENST00000513352 LRRC53A6NM62 1247 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 CCL16O15467 120 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 MED7O43513 233 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 RFPL2O75678 378 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 ADCY5O95622 1261 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 FAM200BP0CF97 657 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 HAPLN1P10915 354 aaPredicted RBP15.87■□□□□ 0.13
NUP54-213ENST00000513352 TUFMP49411 452 aaKnown RBP15.87■□□□□ 0.13
NUP54-213ENST00000513352 GPR15P49685 360 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 PDE6CP51160 858 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 TWF1Q12792 350 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 ADAM15Q13444 863 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 VEPH1Q14D04 833 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 ASIC2Q16515 512 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 CFAP221Q4G0U5 840 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 FIGNQ5HY92 759 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 RARS2Q5T160 578 aaKnown RBP15.87■□□□□ 0.13
NUP54-213ENST00000513352 SLC47A2Q86VL8 602 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 TCEAL8Q8IYN2 117 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 FUKQ8N0W3 1084 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 ELMOD1Q8N336 334 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 C12orf76Q8N812 135 aaPredicted RBP15.87■□□□□ 0.13
NUP54-213ENST00000513352 TFAP2BQ92481 460 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 PABPC5Q96DU9 382 aaKnown RBP15.87■□□□□ 0.13
NUP54-213ENST00000513352 MRFAP1L1Q96HT8 127 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 HNRNPABQ99729 332 aaKnown RBP15.87■□□□□ 0.13
NUP54-213ENST00000513352 PDCL3Q9H2J4 239 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 SFXN1Q9H9B4 322 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 ACP6Q9NPH0 428 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 KIAA1257Q9ULG3 409 aa15.87■□□□□ 0.13
NUP54-213ENST00000513352 M0QYV0 167 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 TRIM66O15016 1216 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 ZMYND10O75800 440 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 C1RP00736 705 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 GYPCP04921 128 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms