RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 MAN2B1O00754 1011 aa20.76■□□□□ 0.91
USP40-207ENST00000450940 ATP2C2O75185 946 aa20.76■□□□□ 0.91
USP40-207ENST00000450940 NOL4O94818 638 aa20.76■□□□□ 0.91
USP40-207ENST00000450940 PRR29P0C7W0 189 aa20.76■□□□□ 0.91
USP40-207ENST00000450940 ATICP31939 592 aa20.76■□□□□ 0.91
USP40-207ENST00000450940 RPS9P46781 194 aaKnown RBP20.76■□□□□ 0.91
USP40-207ENST00000450940 GPR15P49685 360 aa20.76■□□□□ 0.91
USP40-207ENST00000450940 AP3M2P53677 418 aa20.76■□□□□ 0.91
USP40-207ENST00000450940 BECN1Q14457 450 aa20.76■□□□□ 0.91
USP40-207ENST00000450940 UBXN2BQ14CS0 331 aa20.76■□□□□ 0.91
USP40-207ENST00000450940 CCDC142Q17RM4 750 aa20.76■□□□□ 0.91
USP40-207ENST00000450940 TRMT2BQ96GJ1 504 aaKnown RBP20.76■□□□□ 0.91
USP40-207ENST00000450940 SYT15Q9BQS2 421 aa20.76■□□□□ 0.91
USP40-207ENST00000450940 SLC46A2Q9BY10 475 aa20.76■□□□□ 0.91
USP40-207ENST00000450940 BCO2Q9BYV7 579 aa20.76■□□□□ 0.91
USP40-207ENST00000450940 VRTNQ9H8Y1 702 aa20.76■□□□□ 0.91
USP40-207ENST00000450940 CRTAC1Q9NQ79 661 aa20.76■□□□□ 0.91
USP40-207ENST00000450940 TRAF3IP3Q9Y228 551 aa20.76■□□□□ 0.91
USP40-207ENST00000450940 MRPS17Q9Y2R5 130 aaKnown RBP20.76■□□□□ 0.91
USP40-207ENST00000450940 ANAPC1Q9H1A4 1944 aa20.75■□□□□ 0.91
USP40-207ENST00000450940 ZNF202O95125 648 aa20.75■□□□□ 0.91
USP40-207ENST00000450940 DDX6P26196 483 aaKnown RBP eCLIP20.75■□□□□ 0.91
USP40-207ENST00000450940 TARSP26639 723 aaKnown RBP20.75■□□□□ 0.91
USP40-207ENST00000450940 CASP4P49662 377 aa20.75■□□□□ 0.91
USP40-207ENST00000450940 MYL6P60660 151 aa20.75■□□□□ 0.91
USP40-207ENST00000450940 CYP4F8P98187 520 aa20.75■□□□□ 0.91
USP40-207ENST00000450940 MAPRE1Q15691 268 aaKnown RBP20.75■□□□□ 0.91
USP40-207ENST00000450940 DDR2Q16832 855 aa20.75■□□□□ 0.91
USP40-207ENST00000450940 WDR72Q3MJ13 1102 aa20.75■□□□□ 0.91
USP40-207ENST00000450940 C4orf50Q6ZRC1 276 aa20.75■□□□□ 0.91
USP40-207ENST00000450940 SPATA2LQ8IUW3 424 aaPredicted RBP20.75■□□□□ 0.91
USP40-207ENST00000450940 CEP295NLQ96MC4 621 aa20.75■□□□□ 0.91
USP40-207ENST00000450940 GCNAQ96QF7 691 aa20.75■□□□□ 0.91
USP40-207ENST00000450940 MMS19Q96T76 1030 aa20.75■□□□□ 0.91
USP40-207ENST00000450940 NME7Q9Y5B8 376 aa20.75■□□□□ 0.91
USP40-207ENST00000450940 LRRIQ3A6PVS8 624 aaPredicted RBP20.74■□□□□ 0.91
USP40-207ENST00000450940 NCAM2O15394 837 aa20.74■□□□□ 0.91
USP40-207ENST00000450940 KIF20AO95235 890 aa20.74■□□□□ 0.91
USP40-207ENST00000450940 PRAMEF12O95522 483 aa20.74■□□□□ 0.91
USP40-207ENST00000450940 C4BPAP04003 597 aaKnown RBP20.74■□□□□ 0.91
USP40-207ENST00000450940 NR3C1P04150 777 aa20.74■□□□□ 0.91
USP40-207ENST00000450940 GNL1P36915 607 aaPredicted RBP20.74■□□□□ 0.91
USP40-207ENST00000450940 TRPC3Q13507 836 aa20.74■□□□□ 0.91
USP40-207ENST00000450940 KCNB1Q14721 858 aa20.74■□□□□ 0.91
USP40-207ENST00000450940 NFIL3Q16649 462 aa20.74■□□□□ 0.91
USP40-207ENST00000450940 ARHGAP29Q52LW3 1261 aa20.74■□□□□ 0.91
USP40-207ENST00000450940 FRMD5Q7Z6J6 570 aa20.74■□□□□ 0.91
USP40-207ENST00000450940 YAF2Q8IY57 180 aa20.74■□□□□ 0.91
USP40-207ENST00000450940 MAML2Q8IZL2 1156 aaPredicted RBP20.74■□□□□ 0.91
USP40-207ENST00000450940 CMTM8Q8IZV2 173 aa20.74■□□□□ 0.91
USP40-207ENST00000450940 MYCBPAPQ8TBZ2 947 aa20.74■□□□□ 0.91
USP40-207ENST00000450940 TMC2Q8TDI7 906 aa20.74■□□□□ 0.91
USP40-207ENST00000450940 CCDC47Q96A33 483 aaKnown RBP20.74■□□□□ 0.91
USP40-207ENST00000450940 SYAP1Q96A49 352 aaPredicted RBP20.74■□□□□ 0.91
USP40-207ENST00000450940 MRPL45Q9BRJ2 306 aaKnown RBP20.74■□□□□ 0.91
USP40-207ENST00000450940 MAGEC2Q9UBF1 373 aaPredicted RBP20.74■□□□□ 0.91
USP40-207ENST00000450940 UXTQ9UBK9 157 aaPredicted RBP20.74■□□□□ 0.91
USP40-207ENST00000450940 SLC38A8A6NNN8 435 aa20.73■□□□□ 0.91
USP40-207ENST00000450940 DPYSL4O14531 572 aa20.73■□□□□ 0.91
USP40-207ENST00000450940 MAPK13O15264 365 aa20.73■□□□□ 0.91
USP40-207ENST00000450940 GFRA3O60609 400 aa20.73■□□□□ 0.91
USP40-207ENST00000450940 PDGFRBP09619 1106 aa20.73■□□□□ 0.91
USP40-207ENST00000450940 SDHAF4Q5VUM1 108 aa20.73■□□□□ 0.91
USP40-207ENST00000450940 TDRD10Q5VZ19 366 aaKnown RBP20.73■□□□□ 0.91
USP40-207ENST00000450940 VSTM1Q6UX27 236 aa20.73■□□□□ 0.91
USP40-207ENST00000450940 MON1AQ86VX9 555 aa20.73■□□□□ 0.91
USP40-207ENST00000450940 GPIHBP1Q8IV16 184 aa20.73■□□□□ 0.91
USP40-207ENST00000450940 CELF5Q8N6W0 485 aaKnown RBP20.73■□□□□ 0.91
USP40-207ENST00000450940 MSANTD3Q96H12 275 aa20.73■□□□□ 0.91
USP40-207ENST00000450940 SPATA17Q96L03 361 aa20.73■□□□□ 0.91
USP40-207ENST00000450940 GDPD2Q9HCC8 539 aa20.73■□□□□ 0.91
USP40-207ENST00000450940 PIAS3Q9Y6X2 628 aa20.73■□□□□ 0.91
USP40-207ENST00000450940 MYO15AQ9UKN7 3530 aa20.73■□□□□ 0.91
USP40-207ENST00000450940 SP9P0CG40 484 aa20.72■□□□□ 0.91
USP40-207ENST00000450940 PSMC1P62191 440 aaKnown RBP20.72■□□□□ 0.91
USP40-207ENST00000450940 TNNC1P63316 161 aa20.72■□□□□ 0.91
USP40-207ENST00000450940 NUCB2P80303 420 aa20.72■□□□□ 0.91
USP40-207ENST00000450940 MAMSTRQ6ZN01 415 aa20.72■□□□□ 0.91
USP40-207ENST00000450940 GUF1Q8N442 669 aaKnown RBP20.72■□□□□ 0.91
USP40-207ENST00000450940 STKLD1Q8NE28 680 aa20.72■□□□□ 0.91
USP40-207ENST00000450940 BPIFB1Q8TDL5 484 aa20.72■□□□□ 0.91
USP40-207ENST00000450940 MYLPFQ96A32 169 aa20.72■□□□□ 0.91
USP40-207ENST00000450940 SNX25Q9H3E2 840 aa20.72■□□□□ 0.91
USP40-207ENST00000450940 FBXO4Q9UKT5 387 aa20.72■□□□□ 0.91
USP40-207ENST00000450940 RIF1Q5UIP0 2472 aaKnown RBP20.71■□□□□ 0.91
USP40-207ENST00000450940 PRR23AA6NEV1 266 aa20.71■□□□□ 0.91
USP40-207ENST00000450940 IKBKBO14920 756 aa20.71■□□□□ 0.91
USP40-207ENST00000450940 CALUO43852 315 aaPredicted RBP20.71■□□□□ 0.91
USP40-207ENST00000450940 PHACTR2O75167 634 aa20.71■□□□□ 0.91
USP40-207ENST00000450940 TADA3O75528 432 aa20.71■□□□□ 0.91
USP40-207ENST00000450940 VNN1O95497 513 aa20.71■□□□□ 0.91
USP40-207ENST00000450940 MCCD1P59942 119 aaPredicted RBP20.71■□□□□ 0.91
USP40-207ENST00000450940 DLG4P78352 724 aa20.71■□□□□ 0.91
USP40-207ENST00000450940 PLCB2Q00722 1185 aa20.71■□□□□ 0.91
USP40-207ENST00000450940 ZNF528Q3MIS6 628 aa20.71■□□□□ 0.91
USP40-207ENST00000450940 ZACNQ401N2 412 aa20.71■□□□□ 0.91
USP40-207ENST00000450940 C1orf228Q6PIY5 440 aa20.71■□□□□ 0.91
USP40-207ENST00000450940 ASCL5Q7RTU5 278 aa20.71■□□□□ 0.91
USP40-207ENST00000450940 MAB21L3Q8N8X9 362 aa20.71■□□□□ 0.91
USP40-207ENST00000450940 CSGALNACT1Q8TDX6 532 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms