RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TRIM14Q14142 442 aa4.96□□□□□ -1.62
VPS29-202ENST00000447578 GEN1Q17RS7 908 aa4.96□□□□□ -1.62
VPS29-202ENST00000447578 OTUD7BQ6GQQ9 843 aa4.96□□□□□ -1.62
VPS29-202ENST00000447578 FOXR2Q6PJQ5 311 aa4.96□□□□□ -1.62
VPS29-202ENST00000447578 TTC7BQ86TV6 843 aa4.96□□□□□ -1.62
VPS29-202ENST00000447578 SRRM1Q8IYB3 904 aaKnown RBP4.96□□□□□ -1.62
VPS29-202ENST00000447578 KAT5Q92993 513 aa4.96□□□□□ -1.62
VPS29-202ENST00000447578 RGMAQ96B86 450 aa4.96□□□□□ -1.62
VPS29-202ENST00000447578 RIPOR3Q96MK2 946 aa4.96□□□□□ -1.62
VPS29-202ENST00000447578 C7orf25Q9BPX7 421 aa4.96□□□□□ -1.62
VPS29-202ENST00000447578 ARMT1Q9H993 441 aa4.96□□□□□ -1.62
VPS29-202ENST00000447578 LANCL2Q9NS86 450 aa4.96□□□□□ -1.62
VPS29-202ENST00000447578 RBM12Q9NTZ6 932 aaKnown RBP4.96□□□□□ -1.62
VPS29-202ENST00000447578 KCTD5Q9NXV2 234 aa4.96□□□□□ -1.62
VPS29-202ENST00000447578 HSFX1Q9UBD0 423 aa4.96□□□□□ -1.62
VPS29-202ENST00000447578 RNF7Q9UBF6 113 aa4.96□□□□□ -1.62
VPS29-202ENST00000447578 SNX13Q9Y5W8 968 aa4.96□□□□□ -1.62
VPS29-202ENST00000447578 EHBP1L1Q8N3D4 1523 aa4.96□□□□□ -1.62
VPS29-202ENST00000447578 ADAMTS12P58397 1594 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 THOC2Q8NI27 1593 aaKnown RBP4.95□□□□□ -1.62
VPS29-202ENST00000447578 IFT140Q96RY7 1462 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 DNAJC9-AS1A6NH13 148 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 RASA4BC9J798 803 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 SLC16A6O15403 523 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 RASA4O43374 803 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 ERN1O75460 977 aaKnown RBP4.95□□□□□ -1.62
VPS29-202ENST00000447578 CKBP12277 381 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 MYF5P13349 255 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 VAV2P52735 878 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 NOMO3P69849 1222 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 SEPT2Q15019 361 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 POLD3Q15054 466 aaPredicted RBP4.95□□□□□ -1.62
VPS29-202ENST00000447578 PDCD2Q16342 344 aaPredicted RBP4.95□□□□□ -1.62
VPS29-202ENST00000447578 NOMO2Q5JPE7 1267 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 SWSAP1Q6NVH7 229 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 RHOT1Q8IXI2 618 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 PHKBQ93100 1093 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 CRB3Q9BUF7 120 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 ANAPC4Q9UJX5 808 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 RUVBL1Q9Y265 456 aaKnown RBP4.95□□□□□ -1.62
VPS29-202ENST00000447578 PCDHB1Q9Y5F3 818 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 MYOM3Q5VTT5 1437 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 IQGAP2Q13576 1575 aa4.95□□□□□ -1.62
VPS29-202ENST00000447578 CCDC18Q5T9S5 1454 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 ZNF608Q9ULD9 1512 aaPredicted RBP4.94□□□□□ -1.62
VPS29-202ENST00000447578 PBRM1Q86U86 1689 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 H3BUI4 141 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 KPNA5O15131 536 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 CD53P19397 219 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 SLC6A9P48067 706 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 KRTAP10-6P60371 365 aaPredicted RBP4.94□□□□□ -1.62
VPS29-202ENST00000447578 BIRC3Q13489 604 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 FGL2Q14314 439 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 COL23A1Q86Y22 540 aaPredicted RBP4.94□□□□□ -1.62
VPS29-202ENST00000447578 SH2D3CQ8N5H7 860 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 OR2C3Q8N628 320 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 C3orf20Q8ND61 904 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 OR2I1PQ8NGU4 316 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 PLBD2Q8NHP8 589 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 SSH3Q8TE77 659 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 CCT6BQ92526 530 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 APIPQ96GX9 242 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 NT5C1BQ96P26 610 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 LRRC27Q9C0I9 530 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 GSTO2Q9H4Y5 243 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 FAM30AQ9NZY2 134 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 SLC17A6Q9P2U8 582 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.94□□□□□ -1.62
VPS29-202ENST00000447578 CORO2BQ9UQ03 480 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 PTPRKQ15262 1439 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 HECW1Q76N89 1606 aa4.94□□□□□ -1.62
VPS29-202ENST00000447578 WDR62O43379 1518 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 MAGI3Q5TCQ9 1506 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 UGGT2Q9NYU1 1516 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 hCG_1642624A0A1W2PR95 340 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 TCRBV7S2A1N4TA0A589 114 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 HFM1A2PYH4 1435 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 CDHR4A6H8M9 788 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 CGB1A6NKQ9 187 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 FAM171A2A8MVW0 826 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 RPL17P18621 184 aaKnown RBP4.93□□□□□ -1.62
VPS29-202ENST00000447578 TNFSF4P23510 183 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 PROK1P58294 105 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 RAB1AP62820 205 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 SF3B3Q15393 1217 aaKnown RBP4.93□□□□□ -1.62
VPS29-202ENST00000447578 FAM209BQ5JX69 171 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 AKNAD1Q5T1N1 836 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 CCDC174Q6PII3 467 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 APOA5Q6Q788 366 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.93□□□□□ -1.62
VPS29-202ENST00000447578 SEM1Q6ZVN7 128 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 LNX2Q8N448 690 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 CCHCR1Q8TD31 782 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 TRIM63Q969Q1 353 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 MTFMTQ96DP5 389 aaKnown RBP4.93□□□□□ -1.62
VPS29-202ENST00000447578 CLPTM1LQ96KA5 538 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 SLC29A3Q9BZD2 475 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 C22orf23Q9BZE7 217 aa4.93□□□□□ -1.62
VPS29-202ENST00000447578 WDR12Q9GZL7 423 aaKnown RBP4.93□□□□□ -1.62
VPS29-202ENST00000447578 CERS4Q9HA82 394 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms