RNA–Protein interactions for RNA: YLR086W

SMC4, Transcript of Subunit of the condensin complex, yeast

Gene SMC4, Length 4,257 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMC4	YLR086W	PET9	P18239	318 aa	Known RBP	1.03	□□□□□ -2.24
SMC4	YLR086W	BUD23	P25627	275 aa	Predicted RBP	1.03	□□□□□ -2.24
SMC4	YLR086W	UTR5	P32630	166 aa		1.03	□□□□□ -2.24
SMC4	YLR086W	LHP1	P33399	275 aa	Known RBP	1.03	□□□□□ -2.24
SMC4	YLR086W	PAN3	P36102	679 aa	Predicted RBP	1.03	□□□□□ -2.24
SMC4	YLR086W	MSA2	P36157	363 aa		1.03	□□□□□ -2.24
SMC4	YLR086W	IGO1	P53897	168 aa		1.03	□□□□□ -2.24
SMC4	YLR086W	APS2	Q00381	147 aa		1.03	□□□□□ -2.24
SMC4	YLR086W	NUP49	Q02199	472 aa		1.03	□□□□□ -2.24
SMC4	YLR086W	VPS28	Q02767	242 aa		1.03	□□□□□ -2.24
SMC4	YLR086W	UPS3	Q04006	179 aa		1.03	□□□□□ -2.24
SMC4	YLR086W	ATG39	Q06159	398 aa		1.03	□□□□□ -2.24
SMC4	YLR086W	YPR174C	Q06616	221 aa	Predicted RBP	1.03	□□□□□ -2.24
SMC4	YLR086W	GPI11	Q06636	219 aa		1.03	□□□□□ -2.24
SMC4	YLR086W	MDM32	Q12171	622 aa		1.03	□□□□□ -2.24
SMC4	YLR086W	YSF3	P0C074	85 aa	Predicted RBP	1.03	□□□□□ -2.25
SMC4	YLR086W	SNF4	P12904	322 aa		1.03	□□□□□ -2.25
SMC4	YLR086W	YBR032W	P38223	100 aa		1.03	□□□□□ -2.25
SMC4	YLR086W	RPB11	P38902	120 aa		1.03	□□□□□ -2.25
SMC4	YLR086W	CCS1	P40202	249 aa	Known RBP	1.03	□□□□□ -2.25
SMC4	YLR086W	PGD1	P40356	397 aa		1.03	□□□□□ -2.25
SMC4	YLR086W	PIR5	P46999	287 aa		1.03	□□□□□ -2.25
SMC4	YLR086W	YDR391C	Q04170	232 aa		1.03	□□□□□ -2.25
SMC4	YLR086W	SCP1	Q08873	200 aa		1.03	□□□□□ -2.25
SMC4	YLR086W	RPS22B	Q3E7Y3	130 aa	Known RBP	1.03	□□□□□ -2.25
SMC4	YLR086W	SPS2	P08459	502 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	HMRA2	P0CY13	119 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	URA5	P13298	226 aa	Known RBP	1.02	□□□□□ -2.25
SMC4	YLR086W	ATG22	P25568	528 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	SFK1	P35735	353 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	GRE3	P38715	327 aa	Known RBP RIP-Chip data	1.02	□□□□□ -2.25	not detected
SMC4	YLR086W	YHR180W	P38868	163 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	CYB5	P40312	120 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	YKE4	P40544	346 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	SOL1	P50278	321 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	AIF1	P52923	378 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	YPR202W	Q08993	238 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	YHR213W-A	Q8TGT4	77 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	RPS22A	P0C0W1	130 aa	Known RBP	1.02	□□□□□ -2.25
SMC4	YLR086W	YOL162W	P0CF19	215 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	ERV15	P38312	142 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	YBR285W	P38354	144 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	NSG1	P38837	291 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	TVP23	P38962	199 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	YAR068W	P39564	161 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	SPC25	P40014	221 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	ERI1	P62651	68 aa	Known RBP	1.02	□□□□□ -2.25
SMC4	YLR086W	YOR385W	Q08909	290 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	YDL180W	Q12301	547 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	ODC2	Q99297	307 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	FLO9	P39712	1322 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	SIR2	P06700	562 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	MRS1	P07266	363 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	QCR9	P22289	66 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	TRR1	P29509	319 aa	Known RBP	1.02	□□□□□ -2.25
SMC4	YLR086W	SRB6	P32570	121 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	SNC2	P33328	115 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	UPS2	P35200	230 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	DAN1	P47178	298 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	SBH2	P52871	88 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	YCL001W-A	P87012	153 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	ATP14	Q12349	124 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	TSC3	Q3E790	80 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	PET20	Q99373	253 aa		1.02	□□□□□ -2.25
SMC4	YLR086W	STF2	P16965	84 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	NHP2	P32495	156 aa	Predicted RBP	1.01	□□□□□ -2.25
SMC4	YLR086W	DIE2	P50076	525 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	MMS2	P53152	137 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	HHO1	P53551	258 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	PGA1	P53896	198 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	NCE101	Q02820	53 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	FYV7	Q12247	151 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	YPR145C-A	Q2V2P0	78 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	PCC1	Q3E833	88 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	HSP12	P22943	109 aa	Known RBP	1.01	□□□□□ -2.25
SMC4	YLR086W	TRX3	P25372	127 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	OCH1	P31755	480 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	YHR022C	P38763	256 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	ERJ5	P43613	295 aa	Predicted RBP	1.01	□□□□□ -2.25
SMC4	YLR086W	YGR219W	P53307	113 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	HHT1	P61830	136 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	ARL3	Q02804	198 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	MHT1	Q12525	324 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	RAD6	P06104	172 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	YLR156W	P0CE96	114 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	YLR159W	P0CE97	114 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	YLR161W	P0CE98	114 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	DDI2	P0CH63	225 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	DDI3	P0CH64	225 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	BET1	P22804	142 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	PEX4	P29340	183 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	YBR013C	P38215	129 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	AME1	P38313	324 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	YNL184C	P53876	108 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	YMR295C	Q03559	197 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	PLP1	Q04004	230 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	YMR090W	Q04304	227 aa	Known RBP	1.01	□□□□□ -2.25
SMC4	YLR086W	CNL1	Q06333	122 aa		1.01	□□□□□ -2.25
SMC4	YLR086W	YLR050C	Q12155	161 aa	Known RBP	1.01	□□□□□ -2.25
SMC4	YLR086W	Q0144	Q9ZZW2	109 aa		1.01	□□□□□ -2.25

Retrieved 100 of 5,963 RNA–protein pairs in 40.8 ms