RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C YET3Q07451 203 aa-0.39□□□□□ -2.47
PCF11YDR228C YGL014C-AP0C5N1 53 aa-0.39□□□□□ -2.47
PCF11YDR228C APA2P22108 325 aa-0.39□□□□□ -2.47
PCF11YDR228C CGR1P53188 120 aa-0.39□□□□□ -2.47
PCF11YDR228C GPI11Q06636 219 aa-0.39□□□□□ -2.47
PCF11YDR228C IRC19Q07843 230 aa-0.39□□□□□ -2.47
PCF11YDR228C MHF1Q3E835 90 aa-0.39□□□□□ -2.47
PCF11YDR228C SRP21P32342 167 aa-0.4□□□□□ -2.47
PCF11YDR228C KTI11Q3E840 82 aa-0.4□□□□□ -2.47
PCF11YDR228C FES1P38260 290 aa-0.41□□□□□ -2.47
PCF11YDR228C IPI1P38803 334 aaPredicted RBP-0.41□□□□□ -2.47
PCF11YDR228C RCF2P53721 224 aa-0.41□□□□□ -2.47
PCF11YDR228C HSK3P69852 69 aa-0.41□□□□□ -2.48
PCF11YDR228C EST3Q03096 181 aa-0.41□□□□□ -2.48
PCF11YDR228C RFU1Q08003 200 aa-0.41□□□□□ -2.48
PCF11YDR228C PEX11Q12462 236 aa-0.41□□□□□ -2.48
PCF11YDR228C MRPL24P36525 258 aaPredicted RBP-0.42□□□□□ -2.48
PCF11YDR228C YMR122CQ03879 124 aa-0.42□□□□□ -2.48
PCF11YDR228C GRE1Q08969 168 aa-0.42□□□□□ -2.48
PCF11YDR228C ATX1P38636 73 aa-0.43□□□□□ -2.48
PCF11YDR228C PLP1Q04004 230 aa-0.43□□□□□ -2.48
PCF11YDR228C FIT3Q08907 204 aa-0.43□□□□□ -2.48
PCF11YDR228C YGL041W-AP0C5N3 154 aa-0.44□□□□□ -2.48
PCF11YDR228C TRR1P29509 319 aaKnown RBP-0.44□□□□□ -2.48
PCF11YDR228C POR2P40478 281 aa-0.44□□□□□ -2.48
PCF11YDR228C EMC4P53073 190 aa-0.44□□□□□ -2.48
PCF11YDR228C YLR050CQ12155 161 aaKnown RBP-0.44□□□□□ -2.48
PCF11YDR228C YDR010CQ12426 110 aa-0.44□□□□□ -2.48
PCF11YDR228C ATP5P09457 212 aa-0.45□□□□□ -2.48
PCF11YDR228C FUN14P18411 198 aa-0.45□□□□□ -2.48
PCF11YDR228C PEX34P25584 144 aa-0.45□□□□□ -2.48
PCF11YDR228C SRL3P36167 246 aa-0.45□□□□□ -2.48
PCF11YDR228C VMA10P48836 114 aaKnown RBP-0.45□□□□□ -2.48
PCF11YDR228C RDI1Q12434 202 aa-0.45□□□□□ -2.48
PCF11YDR228C YOL164W-AQ3E7A5 60 aa-0.45□□□□□ -2.48
PCF11YDR228C NHP6AP11632 93 aaKnown RBP-0.46□□□□□ -2.48
PCF11YDR228C RAD51P25454 400 aa-0.46□□□□□ -2.48
PCF11YDR228C ARL3Q02804 198 aa-0.46□□□□□ -2.48
PCF11YDR228C YPR153WQ06537 140 aa-0.46□□□□□ -2.48
PCF11YDR228C SPA2P23201 1466 aaKnown RBP-0.46□□□□□ -2.48
PCF11YDR228C CWC21Q03375 135 aaKnown RBP-0.46□□□□□ -2.48
PCF11YDR228C MED11Q99278 115 aa-0.46□□□□□ -2.48
PCF11YDR228C BUB2P26448 306 aaPredicted RBP-0.47□□□□□ -2.48
PCF11YDR228C ATP7P30902 174 aa-0.47□□□□□ -2.48
PCF11YDR228C YBR013CP38215 129 aa-0.47□□□□□ -2.48
PCF11YDR228C SRP14P38985 146 aa-0.47□□□□□ -2.48
PCF11YDR228C YEA6P39953 335 aa-0.47□□□□□ -2.48
PCF11YDR228C GPI2P46961 280 aa-0.47□□□□□ -2.48
PCF11YDR228C YNL140CP53910 189 aa-0.47□□□□□ -2.48
PCF11YDR228C COA4Q05809 96 aa-0.47□□□□□ -2.48
PCF11YDR228C LST8P41318 303 aa-0.48□□□□□ -2.49
PCF11YDR228C VPS55P47111 140 aa-0.48□□□□□ -2.49
PCF11YDR228C MIC27P50945 234 aa-0.48□□□□□ -2.49
PCF11YDR228C SAC3P46674 1301 aa-0.48□□□□□ -2.49
PCF11YDR228C RME1P32338 300 aaKnown RBP-0.48□□□□□ -2.49
PCF11YDR228C YJR128WP47162 119 aa-0.48□□□□□ -2.49
PCF11YDR228C YGL101WP53144 215 aa-0.48□□□□□ -2.49
PCF11YDR228C ORM1P53224 222 aa-0.48□□□□□ -2.49
PCF11YDR228C YNL019CP53975 284 aa-0.48□□□□□ -2.49
PCF11YDR228C CMD1P06787 147 aaKnown RBP-0.49□□□□□ -2.49
PCF11YDR228C MRPL31P14063 131 aaPredicted RBP-0.49□□□□□ -2.49
PCF11YDR228C FIP1P45976 327 aa-0.49□□□□□ -2.49
PCF11YDR228C YLR194CQ05777 254 aa-0.49□□□□□ -2.49
PCF11YDR228C YLR046CQ12253 270 aa-0.49□□□□□ -2.49
PCF11YDR228C SCS22Q6Q595 175 aa-0.49□□□□□ -2.49
PCF11YDR228C YFR035CP43608 114 aa-0.5□□□□□ -2.49
PCF11YDR228C YIP3P53633 176 aa-0.5□□□□□ -2.49
PCF11YDR228C SRX1P36077 127 aa-0.5□□□□□ -2.49
PCF11YDR228C TMA20P89886 181 aaPredicted RBP-0.5□□□□□ -2.49
PCF11YDR228C COX5BP00425 151 aa-0.51□□□□□ -2.49
PCF11YDR228C AUA1P32450 94 aa-0.51□□□□□ -2.49
PCF11YDR228C ATP19P81451 68 aa-0.51□□□□□ -2.49
PCF11YDR228C YCL001W-AP87012 153 aa-0.51□□□□□ -2.49
PCF11YDR228C UBI4P0CG63 381 aaKnown RBP-0.52□□□□□ -2.49
PCF11YDR228C AIM4P38305 123 aaPredicted RBP-0.52□□□□□ -2.49
PCF11YDR228C YNL190WP53872 204 aa-0.52□□□□□ -2.49
PCF11YDR228C HUT1Q12520 339 aa-0.52□□□□□ -2.49
PCF11YDR228C POL2P21951 2222 aaKnown RBP-0.52□□□□□ -2.49
PCF11YDR228C YRF1-3P0CX14 1859 aa-0.52□□□□□ -2.49
PCF11YDR228C YRF1-7P0CX15 1859 aa-0.52□□□□□ -2.49
PCF11YDR228C TY4B-JP47024 1803 aa-0.52□□□□□ -2.49
PCF11YDR228C RPL40AP0CH08 128 aaKnown RBP-0.52□□□□□ -2.49
PCF11YDR228C RPL40BP0CH09 128 aaKnown RBP-0.52□□□□□ -2.49
PCF11YDR228C NMT1P14743 455 aa-0.52□□□□□ -2.49
PCF11YDR228C SUA7P29055 345 aaPredicted RBP-0.52□□□□□ -2.49
PCF11YDR228C UTP11P34247 250 aaPredicted RBP-0.52□□□□□ -2.49
PCF11YDR228C YHR173CP38864 112 aa-0.52□□□□□ -2.49
PCF11YDR228C ANB1P19211 157 aa-0.53□□□□□ -2.49
PCF11YDR228C DLS1P40366 167 aa-0.53□□□□□ -2.49
PCF11YDR228C LSM3P57743 89 aaKnown RBP-0.53□□□□□ -2.49
PCF11YDR228C YHR213WP0CI67 198 aa-0.54□□□□□ -2.5
PCF11YDR228C EMP24P32803 203 aaKnown RBP-0.54□□□□□ -2.5
PCF11YDR228C MRPL11P36521 249 aaPredicted RBP-0.54□□□□□ -2.5
PCF11YDR228C SEC72P39742 193 aaKnown RBP-0.54□□□□□ -2.5
PCF11YDR228C ATP14Q12349 124 aa-0.54□□□□□ -2.5
PCF11YDR228C TY1B-HO13535 1793 aa-0.54□□□□□ -2.5
PCF11YDR228C BRR2P32639 2163 aaKnown RBP-0.54□□□□□ -2.5
PCF11YDR228C PFY1P07274 126 aa-0.54□□□□□ -2.5
PCF11YDR228C LDB18Q07887 179 aa-0.54□□□□□ -2.5
PCF11YDR228C YBR072C-AQ3E794 53 aa-0.54□□□□□ -2.5
Retrieved 100 of 5,963 RNA–protein pairs in 46 ms